Wall clock time and date at job start Tue Mar 31 2020 13:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99993 * 2 1 4 4 C 1.50701 * 119.99852 * 179.97438 * 2 1 3 5 5 O 1.42899 * 109.47303 * 0.02562 * 4 2 1 6 6 C 1.35892 * 117.00323 * 179.97438 * 5 4 2 7 7 C 1.38809 * 120.01980 * 359.72808 * 6 5 4 8 8 C 1.38165 * 120.08475 * 179.70048 * 7 6 5 9 9 C 1.38168 * 120.12215 * 0.59142 * 8 7 6 10 10 C 1.38874 * 120.04205 * 359.68537 * 9 8 7 11 11 N 1.39942 * 120.04310 * 180.02562 * 10 9 8 12 12 C 1.34772 * 120.00163 * 324.88139 * 11 10 9 13 13 O 1.21589 * 119.99687 * 4.58395 * 12 11 10 14 14 N 1.34776 * 120.00209 * 184.58689 * 12 11 10 15 15 C 1.46505 * 119.99880 * 0.02562 * 14 12 11 16 16 C 1.52996 * 109.47195 * 89.99545 * 15 14 12 17 17 C 1.46500 * 120.00081 * 179.97438 * 14 12 11 18 18 C 1.50703 * 109.46464 * 90.00331 * 17 14 12 19 19 H 1.08002 * 120.00026 * 0.02562 * 18 17 14 20 20 C 1.37877 * 119.99897 * 179.97438 * 18 17 14 21 21 N 1.31511 * 120.00062 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99820 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46966 * 89.99911 * 22 20 18 24 24 H 1.48505 * 109.47197 * 209.99721 * 22 20 18 25 25 H 1.48495 * 109.47019 * 329.99783 * 22 20 18 26 26 C 1.38581 * 120.02372 * 179.97438 * 6 5 4 27 27 H 1.07994 * 120.00014 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00194 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46782 * 269.99791 * 3 2 1 30 30 H 1.08998 * 109.47232 * 29.99709 * 3 2 1 31 31 H 1.08992 * 109.46881 * 149.99727 * 3 2 1 32 32 H 1.08997 * 109.46535 * 120.00408 * 4 2 1 33 33 H 1.08997 * 109.47262 * 240.00399 * 4 2 1 34 34 H 1.08010 * 119.95721 * 359.97416 * 7 6 5 35 35 H 1.08003 * 119.94012 * 180.27516 * 8 7 6 36 36 H 1.08003 * 119.97968 * 179.70039 * 9 8 7 37 37 H 0.97006 * 119.99981 * 144.87716 * 11 10 9 38 38 H 1.08996 * 109.46767 * 209.99841 * 15 14 12 39 39 H 1.08997 * 109.46786 * 329.99478 * 15 14 12 40 40 H 1.09007 * 109.46959 * 179.97438 * 16 15 14 41 41 H 1.08996 * 109.47505 * 299.99845 * 16 15 14 42 42 H 1.08997 * 109.47308 * 60.00253 * 16 15 14 43 43 H 1.08994 * 109.47338 * 210.00044 * 17 14 12 44 44 H 1.08999 * 109.46949 * 330.00553 * 17 14 12 45 45 H 0.97004 * 120.00013 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.06407 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6542 -3.6470 0.0004 7 6 3.0303 -3.8295 -0.0052 8 6 3.5598 -5.1056 0.0009 9 6 2.7217 -6.2041 0.0004 10 6 1.3442 -6.0276 0.0003 11 7 0.4953 -7.1402 0.0003 12 6 0.8456 -8.2551 -0.6710 13 8 1.9348 -8.3251 -1.2068 14 7 -0.0115 -9.2924 -0.7484 15 6 -1.3241 -9.2077 -0.1033 16 6 -2.3400 -8.6260 -1.0884 17 6 0.3691 -10.5041 -1.4786 18 6 1.0509 -11.4640 -0.5379 19 1 1.1867 -11.1981 0.5000 20 6 1.5004 -12.6819 -1.0022 21 7 2.0958 -13.5194 -0.1814 22 14 1.2648 -13.1419 -2.7973 23 1 2.4407 -12.6887 -3.5828 24 1 1.1279 -14.6158 -2.9168 25 1 0.0385 -12.4870 -3.3192 26 6 0.8105 -4.7464 0.0008 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2452 1.6197 -1.0277 30 1 1.4745 2.0648 0.5138 31 1 3.0158 1.1748 0.5138 32 1 2.6902 -1.3632 -0.8893 33 1 2.6901 -1.3625 0.8906 34 1 3.6879 -2.9727 -0.0100 35 1 4.6308 -5.2448 0.0010 36 1 3.1381 -7.2006 0.0004 37 1 -0.3452 -7.1089 0.4836 38 1 -1.6436 -10.2040 0.2023 39 1 -1.2573 -8.5629 0.7730 40 1 -3.3167 -8.5635 -0.6085 41 1 -2.0205 -7.6298 -1.3940 42 1 -2.4067 -9.2709 -1.9646 43 1 -0.5228 -10.9736 -1.8933 44 1 1.0511 -10.2417 -2.2874 45 1 2.4124 -14.3762 -0.5081 46 1 -0.2605 -4.6064 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266993198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:14 Heat of formation + Delta-G solvation = -10.392910 kcal Electronic energy + Delta-G solvation = -26075.602943 eV Core-core repulsion = 22352.806642 eV Total energy + Delta-G solvation = -3722.796301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55670 -39.71350 -37.72919 -35.69900 -35.27107 -34.22409 -32.61950 -30.51420 -30.35871 -29.23989 -27.58645 -27.43580 -26.98701 -23.25147 -23.00440 -22.61574 -21.53750 -19.44587 -18.93187 -18.31520 -17.50771 -16.92025 -16.19242 -16.15311 -16.07029 -15.82402 -15.00577 -14.75712 -14.35744 -14.02260 -13.90743 -13.73592 -13.72390 -13.50442 -13.44084 -12.91291 -12.66987 -12.52090 -12.31546 -12.03326 -11.96142 -11.77408 -11.49268 -11.47124 -11.32364 -11.03228 -10.95350 -10.79345 -10.50723 -10.20039 -9.97282 -9.56927 -9.38530 -9.29943 -8.58745 -8.37783 -7.96926 -7.63630 -6.08511 -4.07242 1.39456 1.59406 1.86641 2.79006 3.24340 3.30458 3.36053 3.38244 3.63916 4.03106 4.29695 4.39679 4.40667 4.74850 4.83810 4.95439 4.97571 5.07119 5.11106 5.17339 5.23864 5.25869 5.40734 5.46090 5.50325 5.53402 5.60567 5.63526 5.66541 5.81908 5.89822 6.09219 6.24940 6.31425 6.34445 6.35484 6.45832 6.50060 6.66449 6.73255 6.88748 7.10620 7.24433 7.41853 7.47082 7.61811 8.42940 8.47420 8.94502 9.12263 9.51682 11.04804 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002525 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.995424 B =11088.118464 C =11756.161880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.146 4.146 3 C -0.113 4.113 4 C 0.097 3.903 5 O -0.314 6.314 6 C 0.143 3.857 7 C -0.233 4.233 8 C -0.062 4.062 9 C -0.153 4.153 10 C 0.217 3.783 11 N -0.693 5.693 12 C 0.702 3.298 13 O -0.566 6.566 14 N -0.602 5.602 15 C 0.106 3.894 16 C -0.172 4.172 17 C 0.231 3.769 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.188 4.188 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.403 0.597 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.038 0.962 45 H 0.264 0.736 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 25.464 1.504 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.170 4.170 4 C 0.023 3.977 5 O -0.228 6.228 6 C 0.098 3.902 7 C -0.253 4.253 8 C -0.081 4.081 9 C -0.174 4.174 10 C 0.120 3.880 11 N -0.343 5.343 12 C 0.404 3.596 13 O -0.441 6.441 14 N -0.336 5.336 15 C -0.018 4.018 16 C -0.230 4.230 17 C 0.110 3.890 18 C -0.567 4.567 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.210 4.210 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.240 0.760 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.160 25.147 1.072 25.512 hybrid contribution -0.314 -0.377 -0.597 0.773 sum -4.475 24.770 0.475 25.176 Atomic orbital electron populations 1.23772 0.95410 1.02461 0.98994 1.21558 0.95970 0.93942 1.03158 1.20750 1.00176 0.93602 1.02430 1.21467 0.91041 0.83469 1.01770 1.85960 1.35636 1.12141 1.89104 1.18456 0.91569 0.83541 0.96653 1.21112 0.93483 0.98495 1.12168 1.20835 0.99758 0.91276 0.96264 1.21430 0.91761 1.00916 1.03301 1.17180 0.89916 0.85040 0.95835 1.42919 1.23855 1.12880 1.54601 1.15842 0.84506 0.79615 0.79610 1.90892 1.21060 1.80940 1.51243 1.47253 1.14617 1.15778 1.55947 1.21409 0.83397 1.02661 0.94310 1.22259 0.98841 1.01213 1.00715 1.19607 0.95937 0.80782 0.92647 1.21345 1.37924 0.99887 0.97589 0.90744 1.24850 0.94502 0.96144 0.97537 1.69896 1.39312 1.09183 1.35147 0.86856 0.79357 0.77702 0.85783 1.19889 1.21101 1.19076 1.19906 0.99624 0.88993 1.12487 0.87142 0.88355 0.91220 0.91283 0.91697 0.91016 0.91005 0.85919 0.85591 0.83454 0.75969 0.89214 0.92085 0.91855 0.92924 0.91989 0.95025 0.94405 0.92572 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 13.67 29.01 0.40 -1.00 16 2 C -0.15 -1.16 6.05 -101.07 -0.61 -1.77 16 3 C -0.11 -0.62 10.03 36.01 0.36 -0.26 16 4 C 0.10 0.86 5.14 36.01 0.19 1.05 16 5 O -0.31 -3.69 8.53 -19.40 -0.17 -3.85 16 6 C 0.14 1.87 6.68 -39.24 -0.26 1.60 16 7 C -0.23 -2.86 9.04 -39.40 -0.36 -3.22 16 8 C -0.06 -0.86 10.03 -39.63 -0.40 -1.26 16 9 C -0.15 -2.59 8.69 -39.37 -0.34 -2.93 16 10 C 0.22 3.47 6.30 -83.71 -0.53 2.94 16 11 N -0.69 -11.25 5.21 -14.24 -0.07 -11.33 16 12 C 0.70 14.61 8.12 -86.92 -0.71 13.90 16 13 O -0.57 -13.99 13.36 5.29 0.07 -13.92 16 14 N -0.60 -12.24 2.46 -180.81 -0.44 -12.69 16 15 C 0.11 1.61 5.93 -4.04 -0.02 1.58 16 16 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 17 C 0.23 5.59 4.23 -5.19 -0.02 5.57 16 18 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 19 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 22 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 26 C -0.19 -2.59 9.90 -39.25 -0.39 -2.98 16 27 H 0.11 1.04 6.84 -52.49 -0.36 0.68 16 28 H 0.10 0.64 8.04 -52.49 -0.42 0.22 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.06 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.07 0.58 7.65 -51.93 -0.40 0.19 16 33 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 34 H 0.12 1.18 6.29 -52.48 -0.33 0.85 16 35 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 36 H 0.15 2.91 6.22 -52.48 -0.33 2.58 16 37 H 0.40 5.23 6.52 -40.82 -0.27 4.97 16 38 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.06 0.76 6.30 -51.93 -0.33 0.44 16 40 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 44 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -34.14 380.00 -8.47 -42.62 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.94 Total: 5.32 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.75 Total: -1.92 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.26 Total: -50.78 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.09 Total: -17.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.14 -8.47 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266993198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.224 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds