Wall clock time and date at job start Tue Mar 31 2020 13:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99993 * 2 1 4 4 C 1.50701 * 119.99852 * 179.97438 * 2 1 3 5 5 O 1.42899 * 109.47303 * 0.02562 * 4 2 1 6 6 C 1.35892 * 117.00323 * 179.97438 * 5 4 2 7 7 C 1.38809 * 120.01980 * 359.72808 * 6 5 4 8 8 C 1.38165 * 120.08475 * 179.70048 * 7 6 5 9 9 C 1.38168 * 120.12215 * 0.59142 * 8 7 6 10 10 C 1.38874 * 120.04205 * 359.68537 * 9 8 7 11 11 N 1.39942 * 120.04310 * 180.02562 * 10 9 8 12 12 C 1.34772 * 120.00163 * 324.88139 * 11 10 9 13 13 O 1.21589 * 119.99687 * 4.58395 * 12 11 10 14 14 N 1.34776 * 120.00209 * 184.58689 * 12 11 10 15 15 C 1.46505 * 119.99880 * 0.02562 * 14 12 11 16 16 C 1.52996 * 109.47195 * 89.99545 * 15 14 12 17 17 C 1.46500 * 120.00081 * 179.97438 * 14 12 11 18 18 C 1.50703 * 109.46464 * 90.00331 * 17 14 12 19 19 H 1.08002 * 120.00026 * 0.02562 * 18 17 14 20 20 C 1.37877 * 119.99897 * 179.97438 * 18 17 14 21 21 N 1.31511 * 120.00062 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99820 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46966 * 89.99911 * 22 20 18 24 24 H 1.48505 * 109.47197 * 209.99721 * 22 20 18 25 25 H 1.48495 * 109.47019 * 329.99783 * 22 20 18 26 26 C 1.38581 * 120.02372 * 179.97438 * 6 5 4 27 27 H 1.07994 * 120.00014 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00194 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46782 * 269.99791 * 3 2 1 30 30 H 1.08998 * 109.47232 * 29.99709 * 3 2 1 31 31 H 1.08992 * 109.46881 * 149.99727 * 3 2 1 32 32 H 1.08997 * 109.46535 * 120.00408 * 4 2 1 33 33 H 1.08997 * 109.47262 * 240.00399 * 4 2 1 34 34 H 1.08010 * 119.95721 * 359.97416 * 7 6 5 35 35 H 1.08003 * 119.94012 * 180.27516 * 8 7 6 36 36 H 1.08003 * 119.97968 * 179.70039 * 9 8 7 37 37 H 0.97006 * 119.99981 * 144.87716 * 11 10 9 38 38 H 1.08996 * 109.46767 * 209.99841 * 15 14 12 39 39 H 1.08997 * 109.46786 * 329.99478 * 15 14 12 40 40 H 1.09007 * 109.46959 * 179.97438 * 16 15 14 41 41 H 1.08996 * 109.47505 * 299.99845 * 16 15 14 42 42 H 1.08997 * 109.47308 * 60.00253 * 16 15 14 43 43 H 1.08994 * 109.47338 * 210.00044 * 17 14 12 44 44 H 1.08999 * 109.46949 * 330.00553 * 17 14 12 45 45 H 0.97004 * 120.00013 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.06407 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6542 -3.6470 0.0004 7 6 3.0303 -3.8295 -0.0052 8 6 3.5598 -5.1056 0.0009 9 6 2.7217 -6.2041 0.0004 10 6 1.3442 -6.0276 0.0003 11 7 0.4953 -7.1402 0.0003 12 6 0.8456 -8.2551 -0.6710 13 8 1.9348 -8.3251 -1.2068 14 7 -0.0115 -9.2924 -0.7484 15 6 -1.3241 -9.2077 -0.1033 16 6 -2.3400 -8.6260 -1.0884 17 6 0.3691 -10.5041 -1.4786 18 6 1.0509 -11.4640 -0.5379 19 1 1.1867 -11.1981 0.5000 20 6 1.5004 -12.6819 -1.0022 21 7 2.0958 -13.5194 -0.1814 22 14 1.2648 -13.1419 -2.7973 23 1 2.4407 -12.6887 -3.5828 24 1 1.1279 -14.6158 -2.9168 25 1 0.0385 -12.4870 -3.3192 26 6 0.8105 -4.7464 0.0008 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2452 1.6197 -1.0277 30 1 1.4745 2.0648 0.5138 31 1 3.0158 1.1748 0.5138 32 1 2.6902 -1.3632 -0.8893 33 1 2.6901 -1.3625 0.8906 34 1 3.6879 -2.9727 -0.0100 35 1 4.6308 -5.2448 0.0010 36 1 3.1381 -7.2006 0.0004 37 1 -0.3452 -7.1089 0.4836 38 1 -1.6436 -10.2040 0.2023 39 1 -1.2573 -8.5629 0.7730 40 1 -3.3167 -8.5635 -0.6085 41 1 -2.0205 -7.6298 -1.3940 42 1 -2.4067 -9.2709 -1.9646 43 1 -0.5228 -10.9736 -1.8933 44 1 1.0511 -10.2417 -2.2874 45 1 2.4124 -14.3762 -0.5081 46 1 -0.2605 -4.6064 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266993198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:13 Heat of formation + Delta-G solvation = -31.299050 kcal Electronic energy + Delta-G solvation = -26076.509502 eV Core-core repulsion = 22352.806642 eV Total energy + Delta-G solvation = -3723.702860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85537 -40.87880 -38.84508 -37.09057 -36.21898 -35.54892 -34.67900 -31.92095 -31.52965 -30.52341 -29.07440 -28.08430 -27.79667 -24.88305 -24.40079 -23.72724 -22.88157 -20.87461 -19.82054 -19.28059 -19.14107 -18.83913 -17.47464 -17.08727 -16.99898 -16.90708 -16.48623 -16.30763 -15.74243 -15.37325 -15.20210 -14.80924 -14.68187 -14.49803 -14.44593 -14.32198 -13.87885 -13.65862 -13.51482 -13.43694 -13.19515 -12.95098 -12.62119 -12.58292 -12.43951 -12.30191 -12.10017 -12.06451 -11.98984 -11.84941 -11.73637 -11.29257 -10.94940 -10.81839 -9.96754 -9.63463 -9.37799 -8.94843 -8.32933 -6.37831 0.27084 0.46603 1.28062 1.33034 1.37996 1.45682 1.57183 2.09547 2.22262 2.31718 2.82784 2.94766 3.02661 3.75667 3.89881 4.02379 4.12434 4.17716 4.24055 4.32494 4.33069 4.35236 4.37600 4.50181 4.55871 4.67658 4.74930 4.77928 4.84689 4.87209 4.95542 4.96819 5.04628 5.16763 5.27647 5.28946 5.33105 5.35891 5.46053 5.55049 5.60537 5.66417 5.80055 5.96731 5.98509 6.27065 6.45774 6.63154 6.96375 7.23447 7.55745 8.83979 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002525 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.995424 B =11088.118464 C =11756.161880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C -0.111 4.111 4 C 0.086 3.914 5 O -0.320 6.320 6 C 0.146 3.854 7 C -0.221 4.221 8 C -0.062 4.062 9 C -0.184 4.184 10 C 0.196 3.804 11 N -0.675 5.675 12 C 0.697 3.303 13 O -0.614 6.614 14 N -0.609 5.609 15 C 0.098 3.902 16 C -0.161 4.161 17 C 0.242 3.758 18 C -0.534 4.534 19 H 0.027 0.973 20 C 0.010 3.990 21 N -0.945 5.945 22 Si 0.948 3.052 23 H -0.277 1.277 24 H -0.275 1.275 25 H -0.237 1.237 26 C -0.184 4.184 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.419 0.581 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.268 0.732 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 28.409 0.550 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.148 4.148 3 C -0.168 4.168 4 C 0.012 3.988 5 O -0.234 6.234 6 C 0.099 3.901 7 C -0.240 4.240 8 C -0.081 4.081 9 C -0.205 4.205 10 C 0.100 3.900 11 N -0.326 5.326 12 C 0.398 3.602 13 O -0.494 6.494 14 N -0.343 5.343 15 C -0.024 4.024 16 C -0.219 4.219 17 C 0.119 3.881 18 C -0.573 4.573 19 H 0.046 0.954 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.771 3.229 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.205 4.205 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.259 0.741 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.631 28.154 0.161 28.712 hybrid contribution 0.179 -1.130 -0.161 1.155 sum -5.452 27.024 0.000 27.568 Atomic orbital electron populations 1.23833 0.95779 1.02513 0.99934 1.21797 0.96046 0.94492 1.02439 1.20796 1.00462 0.92356 1.03190 1.21796 0.91135 0.82883 1.03026 1.85979 1.36700 1.12005 1.88683 1.18562 0.91786 0.84099 0.95605 1.21425 0.93780 0.98720 1.10071 1.21027 1.00446 0.91076 0.95536 1.21277 0.92954 1.00136 1.06148 1.17313 0.89580 0.85626 0.97508 1.42573 1.24442 1.11779 1.53784 1.16056 0.83876 0.80588 0.79632 1.90856 1.23115 1.82090 1.53342 1.47242 1.16464 1.14548 1.56034 1.21751 0.81570 1.03264 0.95863 1.22169 0.99399 1.00685 0.99639 1.19253 0.95883 0.81453 0.91468 1.21561 1.38362 1.01087 0.96307 0.95421 1.25846 0.94029 0.96006 1.02897 1.70052 1.40794 1.09905 1.37753 0.85717 0.80223 0.77943 0.79060 1.20323 1.20007 1.15958 1.20006 1.00775 0.88140 1.11625 0.88753 0.86840 0.90483 0.90468 0.90664 0.89856 0.89522 0.82573 0.83771 0.87464 0.74109 0.90013 0.89520 0.88403 0.92593 0.93072 0.92771 0.96249 0.92302 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 13.67 67.78 0.93 -1.75 16 2 C -0.15 -1.96 6.05 -16.49 -0.10 -2.06 16 3 C -0.11 -0.88 10.03 71.24 0.71 -0.16 16 4 C 0.09 1.26 5.14 71.24 0.37 1.62 16 5 O -0.32 -6.70 8.53 -92.33 -0.79 -7.49 16 6 C 0.15 3.48 6.68 22.49 0.15 3.63 16 7 C -0.22 -4.91 9.04 22.39 0.20 -4.70 16 8 C -0.06 -1.68 10.03 22.24 0.22 -1.46 16 9 C -0.18 -6.47 8.69 22.41 0.19 -6.28 16 10 C 0.20 6.30 6.30 38.13 0.24 6.54 16 11 N -0.68 -22.13 5.21 -317.23 -1.65 -23.78 16 12 C 0.70 29.97 8.12 179.06 1.45 31.42 16 13 O -0.61 -32.15 13.36 -4.00 -0.05 -32.21 16 14 N -0.61 -25.17 2.46 -844.21 -2.07 -27.25 16 15 C 0.10 2.86 5.93 86.38 0.51 3.37 16 16 C -0.16 -3.58 10.24 71.98 0.74 -2.85 16 17 C 0.24 11.88 4.23 85.63 0.36 12.25 16 18 C -0.53 -31.69 9.94 25.60 0.25 -31.43 16 19 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 20 C 0.01 0.60 5.47 84.66 0.46 1.07 16 21 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 22 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 26 C -0.18 -4.81 9.90 22.49 0.22 -4.59 16 27 H 0.09 1.67 6.84 -2.91 -0.02 1.65 16 28 H 0.11 1.24 8.04 -2.91 -0.02 1.22 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.50 8.06 -2.39 -0.02 0.48 16 31 H 0.07 0.45 8.12 -2.39 -0.02 0.43 16 32 H 0.08 1.05 7.65 -2.39 -0.02 1.04 16 33 H 0.09 1.04 7.67 -2.39 -0.02 1.02 16 34 H 0.16 2.38 6.29 -2.91 -0.02 2.36 16 35 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.11 4.64 6.22 -2.91 -0.02 4.62 16 37 H 0.42 10.50 6.52 -92.70 -0.60 9.89 16 38 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 39 H 0.09 2.05 6.30 -2.39 -0.02 2.04 16 40 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.05 2.42 7.13 -2.39 -0.02 2.40 16 44 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -79.36 380.00 4.86 -74.50 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.32 Total: 24.87 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.92 Total: 4.62 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -3.43 Total: -110.89 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.84 Total: -39.70 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -79.36 4.86 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266993198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.198 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds