Wall clock time and date at job start Tue Mar 31 2020 13:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47603 * 2 1 4 4 C 1.35900 * 117.00421 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05371 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.93974 * 179.97438 * 5 4 3 7 7 C 1.38270 * 120.05487 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.94100 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47351 * 89.99607 * 8 7 6 10 10 C 1.46892 * 111.00173 * 294.30097 * 9 8 7 11 11 C 1.53236 * 109.34078 * 172.74763 * 10 9 8 12 12 N 1.47079 * 108.52546 * 53.82922 * 11 10 9 13 13 C 1.34770 * 120.88520 * 128.79054 * 12 11 10 14 14 O 1.21684 * 120.00539 * 174.82491 * 13 12 11 15 15 C 1.46380 * 119.99914 * 354.83007 * 13 12 11 16 16 H 1.07999 * 119.99816 * 351.94586 * 15 13 12 17 17 C 1.40046 * 119.99872 * 171.94733 * 15 13 12 18 18 N 1.30666 * 120.00200 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99753 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47278 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47239 * 120.00156 * 19 17 15 22 22 H 1.48498 * 109.47092 * 239.99846 * 19 17 15 23 23 C 1.47080 * 118.23263 * 308.82052 * 12 11 10 24 24 C 1.46903 * 110.99923 * 169.99787 * 9 8 7 25 25 C 1.38262 * 120.11300 * 0.26836 * 7 6 5 26 26 C 1.38143 * 120.05442 * 359.45387 * 25 7 6 27 27 H 1.09001 * 109.47169 * 300.00365 * 1 2 3 28 28 H 1.09002 * 109.46929 * 59.99886 * 1 2 3 29 29 H 1.08994 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47169 * 239.99635 * 2 1 3 31 31 H 1.09002 * 109.46929 * 120.00114 * 2 1 3 32 32 H 1.07995 * 120.03313 * 359.96327 * 5 4 3 33 33 H 1.08000 * 119.97160 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47060 * 329.98955 * 8 7 6 35 35 H 1.09004 * 109.46909 * 209.99936 * 8 7 6 36 36 H 1.08998 * 109.49315 * 292.70569 * 10 9 8 37 37 H 1.09003 * 109.49188 * 52.78766 * 10 9 8 38 38 H 1.09002 * 109.62763 * 294.11399 * 11 10 9 39 39 H 1.09004 * 109.63088 * 173.54244 * 11 10 9 40 40 H 0.97000 * 120.00031 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.62957 * 291.46678 * 23 12 11 42 42 H 1.08997 * 109.62470 * 170.89460 * 23 12 11 43 43 H 1.09003 * 109.49169 * 307.21375 * 24 9 8 44 44 H 1.08999 * 109.48975 * 67.29223 * 24 9 8 45 45 H 1.08003 * 119.97057 * 179.70789 * 25 7 6 46 46 H 1.08002 * 120.02776 * 180.27512 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8852 2.8068 0.0000 6 6 5.2550 2.9850 0.0011 7 6 6.0962 1.8876 0.0022 8 6 7.5903 2.0851 0.0039 9 7 8.0741 2.1494 1.3894 10 6 7.5560 3.3418 2.0732 11 6 7.9316 3.2790 3.5575 12 7 9.3854 3.0837 3.6638 13 6 10.1361 3.8862 4.4440 14 8 11.3209 3.6534 4.5947 15 6 9.5261 5.0380 5.1103 16 1 8.5106 5.3217 4.8766 17 6 10.2594 5.7721 6.0509 18 7 11.4882 5.4293 6.3333 19 14 9.4811 7.2424 6.9007 20 1 8.0915 7.4204 6.4083 21 1 9.4603 7.0125 8.3676 22 1 10.2727 8.4629 6.6022 23 6 9.9985 1.9895 2.8955 24 6 9.5416 2.1030 1.4373 25 6 5.5689 0.6095 -0.0035 26 6 4.1998 0.4259 0.0012 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2286 3.6642 -0.0014 33 1 5.6693 3.9824 0.0012 34 1 7.8345 3.0149 -0.5098 35 1 8.0677 1.2503 -0.5093 36 1 7.9908 4.2354 1.6255 37 1 6.4711 3.3756 1.9736 38 1 7.4143 2.4446 4.0310 39 1 7.6508 4.2121 4.0460 40 1 11.9959 5.9375 6.9851 41 1 9.6800 1.0310 3.3054 42 1 11.0843 2.0700 2.9464 43 1 9.8967 1.2384 0.8765 44 1 9.9487 3.0139 0.9984 45 1 6.2281 -0.2461 -0.0074 46 1 3.7884 -0.5727 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274610258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:44 Heat of formation + Delta-G solvation = -37.127885 kcal Electronic energy + Delta-G solvation = -26353.032677 eV Core-core repulsion = 22629.077060 eV Total energy + Delta-G solvation = -3723.955617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.36603 -38.99136 -37.79461 -36.29676 -33.59253 -32.50370 -32.20117 -31.15763 -30.69394 -30.05796 -27.30323 -25.98733 -24.40157 -23.77051 -23.07993 -22.09528 -21.03795 -20.59009 -18.75199 -18.43311 -16.69902 -16.36529 -16.15803 -15.83133 -15.63581 -14.97844 -14.67963 -14.48387 -14.27983 -14.04870 -13.92729 -13.76264 -13.61067 -13.53206 -13.24483 -12.89698 -12.48379 -12.17577 -12.06286 -11.87966 -11.76976 -11.54445 -11.30353 -11.13914 -11.00693 -10.91885 -10.88176 -10.82326 -10.66612 -10.37168 -10.18639 -9.92891 -9.06766 -8.86476 -8.28938 -8.06109 -7.56877 -7.16263 -6.19663 -4.63507 1.24925 1.32505 2.97066 3.12847 3.21165 3.25236 3.58969 4.08464 4.27585 4.55657 4.56167 4.57091 4.64959 4.73243 4.77442 4.83909 4.89700 5.11357 5.19991 5.27376 5.40311 5.41964 5.51067 5.51798 5.57607 5.65078 5.68479 5.71524 5.83739 5.87686 5.94364 5.95283 6.12622 6.17182 6.24495 6.31203 6.49579 6.56424 6.58828 6.65874 6.75202 7.24213 7.27875 7.33305 7.46541 7.63907 8.15078 8.38607 9.03006 9.45919 10.58296 10.76805 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002709 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.556824 B =10332.384948 C =11378.331089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.125 3.875 5 C -0.152 4.152 6 C -0.073 4.073 7 C -0.107 4.107 8 C 0.096 3.904 9 N -0.531 5.531 10 C 0.038 3.962 11 C 0.128 3.872 12 N -0.644 5.644 13 C 0.561 3.439 14 O -0.579 6.579 15 C -0.544 4.544 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.906 3.094 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.126 3.874 24 C 0.045 3.955 25 C -0.058 4.058 26 C -0.210 4.210 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.268 0.732 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.125 0.875 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.245 -9.312 -14.737 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.079 3.921 5 C -0.171 4.171 6 C -0.092 4.092 7 C -0.108 4.108 8 C -0.032 4.032 9 N -0.256 5.256 10 C -0.091 4.091 11 C 0.004 3.996 12 N -0.383 5.383 13 C 0.366 3.634 14 O -0.462 6.462 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.730 3.270 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.202 1.202 23 C 0.002 3.998 24 C -0.083 4.083 25 C -0.077 4.077 26 C -0.228 4.228 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.715 -9.667 -14.277 24.721 hybrid contribution -0.137 1.117 -0.035 1.126 sum -17.852 -8.550 -14.312 24.426 Atomic orbital electron populations 1.21775 0.92832 1.02801 1.03522 1.22756 0.95778 0.82133 1.01391 1.86054 1.19294 1.29157 1.88807 1.18975 0.82051 0.94223 0.96808 1.20373 0.95110 0.94754 1.06820 1.20914 0.92120 0.98817 0.97321 1.19675 0.95265 0.93045 1.02784 1.20977 0.90980 1.00878 0.90326 1.61991 1.09399 1.40557 1.13648 1.22655 0.99715 0.90322 0.96372 1.21482 0.82941 1.01973 0.93234 1.48247 1.06473 1.33468 1.50079 1.18256 0.85531 0.82064 0.77504 1.90583 1.16228 1.74605 1.64801 1.20989 1.00520 1.12077 1.24519 0.90918 1.25726 0.94224 0.97500 0.95746 1.70016 1.08359 1.35479 1.25965 0.86346 0.80042 0.81277 0.79296 1.18711 1.20152 1.20178 1.21191 0.99149 0.90853 0.88647 1.22535 0.86700 1.00223 0.98892 1.20788 0.93938 0.96849 0.96137 1.21192 0.94373 0.97818 1.09458 0.91469 0.91588 0.90426 0.92159 0.91990 0.85368 0.85490 0.94282 0.90282 0.94722 0.90407 0.93349 0.88739 0.92154 0.93322 0.89696 0.90862 0.94765 0.85735 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.44 10.14 -19.43 -0.20 -3.64 16 4 C 0.12 1.42 6.69 -39.22 -0.26 1.16 16 5 C -0.15 -1.72 9.99 -39.43 -0.39 -2.11 16 6 C -0.07 -0.83 7.85 -39.60 -0.31 -1.14 16 7 C -0.11 -1.26 4.89 -104.60 -0.51 -1.77 16 8 C 0.10 1.17 5.12 -4.98 -0.03 1.14 16 9 N -0.53 -8.00 4.62 -235.77 -1.09 -9.09 16 10 C 0.04 0.61 5.34 -3.71 -0.02 0.59 16 11 C 0.13 2.50 6.52 -3.60 -0.02 2.48 16 12 N -0.64 -15.04 3.01 -174.13 -0.52 -15.57 16 13 C 0.56 16.16 7.61 -12.99 -0.10 16.06 16 14 O -0.58 -18.95 14.55 5.20 0.08 -18.87 16 15 C -0.54 -15.34 8.85 -35.63 -0.32 -15.65 16 16 H 0.07 1.87 5.73 -52.49 -0.30 1.57 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -23.16 11.86 55.55 0.66 -22.50 16 19 Si 0.91 20.13 29.56 -169.99 -5.02 15.10 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.13 2.54 6.58 -3.60 -0.02 2.51 16 24 C 0.05 0.73 5.62 -3.70 -0.02 0.71 16 25 C -0.06 -0.64 9.69 -39.61 -0.38 -1.03 16 26 C -0.21 -2.21 9.04 -39.44 -0.36 -2.56 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 1.32 7.93 -52.49 -0.42 0.90 16 34 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.08 0.86 7.91 -51.93 -0.41 0.44 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.13 5.65 -51.93 -0.29 0.84 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.90 5.38 -51.93 -0.28 1.62 16 40 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.87 7.10 -51.93 -0.37 1.51 16 43 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 46 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -34.85 368.86 -9.77 -44.62 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.97 Total: 1.51 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.26 Total: 2.88 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.95 Total: -47.16 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.12 Total: -22.51 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.85 -9.77 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274610258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.488 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds