Wall clock time and date at job start Tue Mar 31 2020 13:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47603 * 2 1 4 4 C 1.35900 * 117.00421 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05371 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.93974 * 179.97438 * 5 4 3 7 7 C 1.38270 * 120.05487 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.94100 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47351 * 89.99607 * 8 7 6 10 10 C 1.46892 * 111.00173 * 294.30097 * 9 8 7 11 11 C 1.53236 * 109.34078 * 172.74763 * 10 9 8 12 12 N 1.47079 * 108.52546 * 53.82922 * 11 10 9 13 13 C 1.34770 * 120.88520 * 128.79054 * 12 11 10 14 14 O 1.21684 * 120.00539 * 174.82491 * 13 12 11 15 15 C 1.46380 * 119.99914 * 354.83007 * 13 12 11 16 16 H 1.07999 * 119.99816 * 351.94586 * 15 13 12 17 17 C 1.40046 * 119.99872 * 171.94733 * 15 13 12 18 18 N 1.30666 * 120.00200 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99753 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47278 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47239 * 120.00156 * 19 17 15 22 22 H 1.48498 * 109.47092 * 239.99846 * 19 17 15 23 23 C 1.47080 * 118.23263 * 308.82052 * 12 11 10 24 24 C 1.46903 * 110.99923 * 169.99787 * 9 8 7 25 25 C 1.38262 * 120.11300 * 0.26836 * 7 6 5 26 26 C 1.38143 * 120.05442 * 359.45387 * 25 7 6 27 27 H 1.09001 * 109.47169 * 300.00365 * 1 2 3 28 28 H 1.09002 * 109.46929 * 59.99886 * 1 2 3 29 29 H 1.08994 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47169 * 239.99635 * 2 1 3 31 31 H 1.09002 * 109.46929 * 120.00114 * 2 1 3 32 32 H 1.07995 * 120.03313 * 359.96327 * 5 4 3 33 33 H 1.08000 * 119.97160 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47060 * 329.98955 * 8 7 6 35 35 H 1.09004 * 109.46909 * 209.99936 * 8 7 6 36 36 H 1.08998 * 109.49315 * 292.70569 * 10 9 8 37 37 H 1.09003 * 109.49188 * 52.78766 * 10 9 8 38 38 H 1.09002 * 109.62763 * 294.11399 * 11 10 9 39 39 H 1.09004 * 109.63088 * 173.54244 * 11 10 9 40 40 H 0.97000 * 120.00031 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.62957 * 291.46678 * 23 12 11 42 42 H 1.08997 * 109.62470 * 170.89460 * 23 12 11 43 43 H 1.09003 * 109.49169 * 307.21375 * 24 9 8 44 44 H 1.08999 * 109.48975 * 67.29223 * 24 9 8 45 45 H 1.08003 * 119.97057 * 179.70789 * 25 7 6 46 46 H 1.08002 * 120.02776 * 180.27512 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8852 2.8068 0.0000 6 6 5.2550 2.9850 0.0011 7 6 6.0962 1.8876 0.0022 8 6 7.5903 2.0851 0.0039 9 7 8.0741 2.1494 1.3894 10 6 7.5560 3.3418 2.0732 11 6 7.9316 3.2790 3.5575 12 7 9.3854 3.0837 3.6638 13 6 10.1361 3.8862 4.4440 14 8 11.3209 3.6534 4.5947 15 6 9.5261 5.0380 5.1103 16 1 8.5106 5.3217 4.8766 17 6 10.2594 5.7721 6.0509 18 7 11.4882 5.4293 6.3333 19 14 9.4811 7.2424 6.9007 20 1 8.0915 7.4204 6.4083 21 1 9.4603 7.0125 8.3676 22 1 10.2727 8.4629 6.6022 23 6 9.9985 1.9895 2.8955 24 6 9.5416 2.1030 1.4373 25 6 5.5689 0.6095 -0.0035 26 6 4.1998 0.4259 0.0012 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2286 3.6642 -0.0014 33 1 5.6693 3.9824 0.0012 34 1 7.8345 3.0149 -0.5098 35 1 8.0677 1.2503 -0.5093 36 1 7.9908 4.2354 1.6255 37 1 6.4711 3.3756 1.9736 38 1 7.4143 2.4446 4.0310 39 1 7.6508 4.2121 4.0460 40 1 11.9959 5.9375 6.9851 41 1 9.6800 1.0310 3.3054 42 1 11.0843 2.0700 2.9464 43 1 9.8967 1.2384 0.8765 44 1 9.9487 3.0139 0.9984 45 1 6.2281 -0.2461 -0.0074 46 1 3.7884 -0.5727 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274610258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:43 Heat of formation + Delta-G solvation = -60.386912 kcal Electronic energy + Delta-G solvation = -26354.041264 eV Core-core repulsion = 22629.077060 eV Total energy + Delta-G solvation = -3724.964204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19355 -40.40703 -39.01657 -37.85852 -35.21071 -34.61904 -32.94640 -32.29444 -31.71648 -31.17791 -28.96929 -27.66328 -25.34988 -24.78356 -24.48072 -23.01907 -22.32682 -21.74582 -20.49764 -19.18395 -18.53705 -17.83794 -17.00754 -16.94999 -16.66477 -16.54029 -15.99761 -15.83741 -15.76987 -15.48834 -15.27397 -14.97529 -14.40776 -14.38655 -14.30247 -14.20841 -13.54664 -13.49112 -13.29258 -13.14052 -12.84001 -12.81474 -12.71037 -12.66423 -12.44130 -12.39243 -12.17055 -11.95754 -11.89885 -11.72265 -11.59764 -11.52854 -10.95681 -9.89666 -9.79318 -9.46368 -9.09326 -8.93273 -8.30207 -6.84163 0.42487 0.48304 1.39398 1.39580 1.57447 2.23211 2.30580 2.45152 2.63773 2.84886 3.21026 3.58739 3.83568 3.91179 3.99170 4.04398 4.07853 4.13940 4.14411 4.29580 4.38141 4.38582 4.44509 4.45972 4.48458 4.57310 4.68193 4.77687 4.78434 4.82495 4.90136 4.93788 4.95839 4.96661 5.14677 5.19167 5.22286 5.35340 5.38434 5.45005 5.71927 5.73740 5.86366 6.04567 6.09736 6.14526 6.41966 6.51195 6.87537 7.41531 8.45554 8.66593 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002709 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.556824 B =10332.384948 C =11378.331089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.115 3.885 5 C -0.165 4.165 6 C -0.078 4.078 7 C -0.119 4.119 8 C 0.100 3.900 9 N -0.532 5.532 10 C 0.051 3.949 11 C 0.125 3.875 12 N -0.648 5.648 13 C 0.542 3.458 14 O -0.634 6.634 15 C -0.568 4.568 16 H 0.093 0.907 17 C 0.028 3.972 18 N -0.824 5.824 19 Si 0.996 3.004 20 H -0.245 1.245 21 H -0.268 1.268 22 H -0.270 1.270 23 C 0.122 3.878 24 C 0.059 3.941 25 C -0.062 4.062 26 C -0.211 4.211 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.042 0.958 35 H 0.098 0.902 36 H 0.024 0.976 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.274 0.726 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.020 0.980 45 H 0.139 0.861 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.837 -9.628 -15.708 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.070 3.930 5 C -0.183 4.183 6 C -0.097 4.097 7 C -0.120 4.120 8 C -0.027 4.027 9 N -0.257 5.257 10 C -0.078 4.078 11 C 0.002 3.998 12 N -0.384 5.384 13 C 0.348 3.652 14 O -0.521 6.521 15 C -0.605 4.605 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.454 5.454 19 Si 0.815 3.185 20 H -0.167 1.167 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.002 4.002 24 C -0.070 4.070 25 C -0.080 4.080 26 C -0.230 4.230 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.043 0.957 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.126 0.874 44 H 0.039 0.961 45 H 0.157 0.843 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.370 -10.021 -15.298 27.375 hybrid contribution 0.591 1.087 0.208 1.254 sum -19.780 -8.935 -15.091 26.435 Atomic orbital electron populations 1.21806 0.91633 1.04119 1.03120 1.23034 0.96798 0.80880 1.02190 1.86046 1.19010 1.31211 1.88699 1.19179 0.82595 0.94564 0.96658 1.20550 0.95356 0.95293 1.07123 1.21023 0.92210 0.99159 0.97301 1.19687 0.94868 0.93555 1.03886 1.21017 0.91461 1.01874 0.88322 1.61969 1.08343 1.39621 1.15783 1.22474 1.00861 0.90557 0.93885 1.21630 0.80506 1.01759 0.95918 1.48141 1.07938 1.33190 1.49171 1.18673 0.85297 0.83118 0.78120 1.90528 1.18512 1.76150 1.66928 1.21496 1.01597 1.12440 1.24931 0.88953 1.26998 0.94512 1.01000 0.96154 1.70187 1.10564 1.37565 1.27075 0.85004 0.79583 0.76097 0.77841 1.16741 1.19290 1.19469 1.21324 0.97520 0.90144 0.91175 1.22365 0.87620 1.01152 0.95861 1.21005 0.94408 0.97042 0.95585 1.21423 0.94205 0.98596 1.08776 0.92075 0.91776 0.88246 0.90993 0.91456 0.84779 0.84910 0.94000 0.88330 0.95735 0.88253 0.92574 0.89686 0.91611 0.92358 0.92586 0.87384 0.96130 0.84319 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.58 5.46 71.98 0.39 0.98 16 3 O -0.34 -6.72 10.14 -92.43 -0.94 -7.66 16 4 C 0.12 2.43 6.69 22.51 0.15 2.58 16 5 C -0.16 -3.48 9.99 22.37 0.22 -3.26 16 6 C -0.08 -1.63 7.85 22.25 0.17 -1.46 16 7 C -0.12 -2.51 4.89 -19.85 -0.10 -2.60 16 8 C 0.10 2.16 5.12 85.56 0.44 2.59 16 9 N -0.53 -14.88 4.62 -899.83 -4.16 -19.04 16 10 C 0.05 1.57 5.34 86.38 0.46 2.03 16 11 C 0.13 4.82 6.52 86.35 0.56 5.39 16 12 N -0.65 -30.84 3.01 -823.04 -2.48 -33.32 16 13 C 0.54 32.41 7.61 86.36 0.66 33.07 16 14 O -0.63 -43.62 14.55 -4.30 -0.06 -43.68 16 15 C -0.57 -32.60 8.85 24.83 0.22 -32.38 16 16 H 0.09 4.75 5.73 -2.91 -0.02 4.73 16 17 C 0.03 1.59 5.50 85.30 0.47 2.06 16 18 N -0.82 -51.22 11.86 21.83 0.26 -50.96 16 19 Si 1.00 41.32 29.56 68.60 2.03 43.34 16 20 H -0.24 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C 0.12 4.98 6.58 86.35 0.57 5.55 16 24 C 0.06 1.81 5.62 86.38 0.49 2.30 16 25 C -0.06 -1.19 9.69 22.25 0.22 -0.98 16 26 C -0.21 -3.92 9.04 22.36 0.20 -3.72 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 31 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 32 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.13 2.52 7.93 -2.91 -0.02 2.50 16 34 H 0.04 0.90 8.07 -2.39 -0.02 0.89 16 35 H 0.10 1.77 7.91 -2.38 -0.02 1.75 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 2.67 5.65 -2.39 -0.01 2.66 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 3.40 5.38 -2.39 -0.01 3.38 16 40 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 2.59 7.10 -2.39 -0.02 2.58 16 43 H 0.11 2.62 7.99 -2.39 -0.02 2.60 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.14 2.00 6.30 -2.91 -0.02 1.98 16 Total: -1.00 -78.72 368.86 1.49 -77.23 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.97 Total: 22.61 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.86 Total: 11.48 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -6.38 Total: -103.32 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.00 Total: -51.34 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -78.72 1.49 -77.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274610258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.844 kcal (2) G-P(sol) polarization free energy of solvation -78.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds