Wall clock time and date at job start Tue Mar 31 2020 12:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47475 * 2 1 4 4 C 1.50704 * 109.47009 * 240.00240 * 2 1 3 5 5 O 1.21284 * 120.00004 * 251.02607 * 4 2 1 6 6 N 1.34772 * 120.00080 * 71.02433 * 4 2 1 7 7 C 1.46505 * 119.99994 * 4.99551 * 6 4 2 8 8 C 1.46502 * 120.00154 * 185.00200 * 6 4 2 9 9 C 1.50692 * 109.47321 * 89.99629 * 8 6 4 10 10 H 1.07998 * 120.00171 * 0.02562 * 9 8 6 11 11 C 1.37886 * 119.99939 * 180.02562 * 9 8 6 12 12 N 1.31510 * 119.99678 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99883 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47572 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46983 * 120.00174 * 13 11 9 16 16 H 1.48493 * 109.47029 * 239.99792 * 13 11 9 17 17 N 1.46896 * 109.47155 * 120.00216 * 2 1 3 18 18 C 1.47219 * 111.00169 * 58.02434 * 17 2 1 19 19 C 1.53071 * 108.54440 * 167.13747 * 18 17 2 20 20 C 1.50336 * 109.69789 * 49.27206 * 19 18 17 21 21 C 1.31697 * 122.56002 * 343.31512 * 20 19 18 22 22 C 1.47071 * 118.34063 * 180.45254 * 21 20 19 23 23 C 1.36229 * 125.95724 * 64.86790 * 22 21 20 24 24 C 1.40828 * 106.72310 * 179.91119 * 23 22 21 25 25 C 1.34794 * 107.06758 * 0.35489 * 24 23 22 26 26 O 1.34302 * 108.71607 * 359.78139 * 25 24 23 27 27 C 1.46832 * 111.00341 * 294.99596 * 17 2 1 28 28 H 1.09004 * 109.47211 * 68.15537 * 1 2 3 29 29 H 1.08994 * 109.47237 * 188.16011 * 1 2 3 30 30 H 1.09004 * 109.46758 * 308.16168 * 1 2 3 31 31 H 1.09005 * 109.46692 * 95.28284 * 7 6 4 32 32 H 1.08999 * 109.47157 * 215.28438 * 7 6 4 33 33 H 1.09002 * 109.47153 * 335.28738 * 7 6 4 34 34 H 1.08997 * 109.46635 * 209.99976 * 8 6 4 35 35 H 1.09000 * 109.46475 * 329.99216 * 8 6 4 36 36 H 0.97006 * 120.00155 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.62430 * 286.85853 * 18 17 2 38 38 H 1.08999 * 109.62170 * 47.22898 * 18 17 2 39 39 H 1.09004 * 109.42854 * 169.34220 * 19 18 17 40 40 H 1.08997 * 109.43546 * 289.24677 * 19 18 17 41 41 H 1.07997 * 118.68726 * 163.45990 * 20 19 18 42 42 H 1.07996 * 126.63803 * 0.04472 * 23 22 21 43 43 H 1.08003 * 126.47057 * 180.10117 * 24 23 22 44 44 H 1.08006 * 125.64054 * 179.77729 * 25 24 23 45 45 H 1.08994 * 109.34422 * 294.92468 * 27 17 2 46 46 H 1.09007 * 109.33540 * 54.60727 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5564 -1.7995 -1.1305 6 7 1.8991 -0.1354 -2.4421 7 6 1.3666 1.2250 -2.5528 8 6 2.2866 -0.8707 -3.6485 9 6 1.1029 -1.6466 -4.1659 10 1 0.1564 -1.5967 -3.6482 11 6 1.2283 -2.4203 -5.3004 12 7 2.3810 -2.4815 -5.9305 13 14 -0.2392 -3.3815 -5.9421 14 1 -1.4103 -3.1446 -5.0602 15 1 -0.5599 -2.9332 -7.3210 16 1 0.0857 -4.8304 -5.9557 17 7 2.0196 -0.6925 1.1994 18 6 1.5093 -2.0722 1.2573 19 6 2.2924 -2.8364 2.3278 20 6 2.3285 -2.0341 3.5987 21 6 2.0461 -0.7482 3.6334 22 6 2.1203 -0.0517 4.9266 23 6 3.2472 0.1425 5.6670 24 6 2.8575 0.8516 6.8196 25 6 1.5267 1.0470 6.7328 26 8 1.0845 0.5003 5.5886 27 6 1.6490 0.0387 2.4175 28 1 -0.3634 0.3824 -0.9539 29 1 -0.3633 -1.0172 0.1459 30 1 -0.3633 0.6350 0.8081 31 1 2.1920 1.9355 -2.5996 32 1 0.7648 1.3070 -3.4579 33 1 0.7470 1.4445 -1.6833 34 1 2.6214 -0.1673 -4.4109 35 1 3.0965 -1.5599 -3.4094 36 1 2.4691 -3.0255 -6.7288 37 1 0.4507 -2.0604 1.5166 38 1 1.6435 -2.5531 0.2884 39 1 1.8077 -3.7942 2.5171 40 1 3.3107 -3.0080 1.9790 41 1 2.5988 -2.5316 4.5183 42 1 4.2464 -0.1823 5.4172 43 1 3.5025 1.1741 7.6236 44 1 0.9168 1.5586 7.4628 45 1 2.1580 1.0024 2.4291 46 1 0.5709 0.1997 2.4279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285710122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:41 Heat of formation + Delta-G solvation = -1.642168 kcal Electronic energy + Delta-G solvation = -27015.058505 eV Core-core repulsion = 23292.641664 eV Total energy + Delta-G solvation = -3722.416841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.39223 -41.44002 -39.45538 -36.60614 -35.85089 -34.68957 -33.85782 -32.72497 -31.26014 -29.51102 -29.01848 -27.52277 -26.39707 -25.17691 -24.67676 -23.20659 -22.44656 -21.70769 -19.93441 -19.13039 -18.66656 -18.18884 -17.99006 -17.13263 -16.86780 -16.69110 -16.29080 -16.18611 -15.88367 -15.47019 -15.08739 -14.75274 -14.62869 -14.37199 -14.02076 -13.97379 -13.76830 -13.64324 -13.46672 -13.41752 -13.26317 -13.19516 -13.07244 -12.81506 -12.64481 -12.49958 -12.31741 -12.19779 -12.04676 -11.68125 -11.57088 -10.86691 -10.64525 -10.25485 -10.14748 -9.38596 -9.26874 -9.21366 -8.21482 -6.36388 0.52521 1.06645 1.36603 1.38684 1.50308 1.71701 1.84040 2.12353 2.31367 2.42654 2.97670 3.08052 3.61109 3.72407 3.73539 4.02054 4.07699 4.12662 4.19077 4.23293 4.32287 4.36055 4.37754 4.47190 4.55356 4.65638 4.71048 4.73919 4.80112 4.92822 4.93575 4.99653 5.01395 5.05562 5.10929 5.19792 5.25472 5.26352 5.37805 5.58633 5.61073 5.68626 5.86373 5.98103 6.07347 6.09065 6.19530 6.71989 6.82227 7.29719 7.52280 8.85691 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.002760 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.040827 B =10141.425402 C =10424.104805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 H 0.127 0.873 4 C 0.505 3.495 5 O -0.575 6.575 6 N -0.609 5.609 7 C 0.070 3.930 8 C 0.260 3.740 9 C -0.538 4.538 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.283 1.283 17 N -0.523 5.523 18 C 0.032 3.968 19 C -0.080 4.080 20 C -0.098 4.098 21 C -0.078 4.078 22 C 0.007 3.993 23 C -0.204 4.204 24 C -0.223 4.223 25 C -0.040 4.040 26 O -0.188 6.188 27 C 0.099 3.901 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.021 0.979 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.239 0.761 45 H 0.093 0.907 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 9.913 24.262 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.037 4.037 3 H 0.145 0.855 4 C 0.294 3.706 5 O -0.455 6.455 6 N -0.341 5.341 7 C -0.072 4.072 8 C 0.138 3.862 9 C -0.576 4.576 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.208 1.208 17 N -0.246 5.246 18 C -0.095 4.095 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.079 4.079 22 C -0.043 4.043 23 C -0.223 4.223 24 C -0.242 4.242 25 C -0.107 4.107 26 O -0.084 6.084 27 C -0.028 4.028 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.039 0.961 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.170 0.830 43 H 0.188 0.812 44 H 0.255 0.745 45 H 0.111 0.889 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.696 9.282 23.999 25.996 hybrid contribution -0.819 -0.674 -0.722 1.283 sum -4.515 8.608 23.277 25.225 Atomic orbital electron populations 1.22459 0.93709 1.03145 1.04598 1.21596 0.95304 0.99042 0.87803 0.85517 1.20975 0.78749 0.85833 0.85074 1.90525 1.45444 1.23325 1.86172 1.48102 1.62794 1.16826 1.06331 1.22102 0.99663 0.81303 1.04152 1.18736 0.94873 0.90978 0.81570 1.21705 0.97246 1.28407 1.10270 0.92701 1.25864 0.99014 0.97475 0.96876 1.70066 1.25858 1.41212 1.19762 0.85372 0.79032 0.78032 0.78399 1.18960 1.19568 1.20848 1.62261 1.59238 1.02496 1.00643 1.22562 0.96095 0.89391 1.01466 1.20516 1.01431 0.98201 0.91564 1.22828 0.96132 0.93469 0.99156 1.18665 1.06312 0.93611 0.89264 1.20737 0.86030 1.02715 0.94847 1.22123 0.99102 1.04798 0.96265 1.22081 0.96201 1.05069 1.00856 1.24912 0.96057 1.01327 0.88391 1.84147 1.36811 1.57170 1.30278 1.20854 0.99415 0.96642 0.85873 0.90313 0.93025 0.88599 0.91469 0.91467 0.88220 0.96098 0.98358 0.92457 0.94351 0.89723 0.88558 0.90615 0.85644 0.83025 0.81175 0.74474 0.88906 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.43 8.03 71.98 0.58 -3.85 16 2 C 0.07 2.18 1.92 44.17 0.08 2.26 16 3 H 0.13 3.03 7.42 -2.39 -0.02 3.01 16 4 C 0.51 21.06 6.76 87.66 0.59 21.65 16 5 O -0.57 -29.37 13.17 -3.04 -0.04 -29.41 16 6 N -0.61 -25.84 2.86 -851.12 -2.43 -28.27 16 7 C 0.07 2.07 9.80 127.77 1.25 3.32 16 8 C 0.26 14.11 5.22 85.63 0.45 14.55 16 9 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.38 5.46 84.66 0.46 0.84 16 12 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 13 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 N -0.52 -15.50 4.55 -880.12 -4.01 -19.51 16 18 C 0.03 1.01 4.30 86.27 0.37 1.38 16 19 C -0.08 -2.10 6.32 29.76 0.19 -1.91 16 20 C -0.10 -2.26 9.60 24.89 0.24 -2.02 16 21 C -0.08 -1.85 5.75 -18.40 -0.11 -1.96 16 22 C 0.01 0.15 6.45 24.12 0.16 0.30 16 23 C -0.20 -4.08 10.84 22.44 0.24 -3.84 16 24 C -0.22 -3.48 10.88 22.11 0.24 -3.23 16 25 C -0.04 -0.57 12.08 67.03 0.81 0.23 16 26 O -0.19 -3.96 10.67 -6.94 -0.07 -4.03 16 27 C 0.10 2.35 5.18 85.41 0.44 2.79 16 28 H 0.08 1.91 6.00 -2.38 -0.01 1.90 16 29 H 0.05 1.44 6.25 -2.39 -0.01 1.43 16 30 H 0.10 1.75 6.82 -2.39 -0.02 1.73 16 31 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 33 H 0.10 2.22 4.43 -2.39 -0.01 2.21 16 34 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 35 H 0.00 -0.11 7.36 -2.39 -0.02 -0.13 16 36 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 37 H 0.04 1.10 6.82 -2.39 -0.02 1.09 16 38 H 0.08 3.40 5.03 -2.39 -0.01 3.39 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.13 2.48 7.98 -2.91 -0.02 2.46 16 42 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.24 1.27 8.06 -2.91 -0.02 1.24 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.31 6.37 -2.38 -0.02 1.30 16 Total: -1.00 -75.40 366.86 2.98 -72.42 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.98 Total: 18.19 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.24 Total: -0.01 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -6.15 Total: -103.94 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.11 Total: -33.44 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.40 2.98 -72.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285710122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.774 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds