Wall clock time and date at job start Tue Mar 31 2020 12:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47421 * 2 1 4 4 C 1.46901 * 110.99597 * 293.95775 * 3 2 1 5 5 C 1.53242 * 109.33720 * 187.25327 * 4 3 2 6 6 N 1.47079 * 108.52221 * 306.16641 * 5 4 3 7 7 C 1.34773 * 120.88238 * 231.19389 * 6 5 4 8 8 O 1.21591 * 119.99968 * 176.31114 * 7 6 5 9 9 C 1.47534 * 120.00068 * 356.02706 * 7 6 5 10 10 C 1.39670 * 120.19812 * 325.31338 * 9 7 6 11 11 C 1.37828 * 119.91881 * 179.73943 * 10 9 7 12 12 C 1.38577 * 120.32273 * 0.53037 * 11 10 9 13 13 C 1.38023 * 120.39964 * 359.72219 * 12 11 10 14 14 C 1.38827 * 120.07643 * 0.02562 * 13 12 11 15 15 O 1.35518 * 120.16280 * 179.97438 * 14 13 12 16 16 C 1.34815 * 117.00397 * 354.39523 * 15 14 13 17 17 H 1.08001 * 119.99423 * 5.08174 * 16 15 14 18 18 C 1.38695 * 120.00413 * 185.07904 * 16 15 14 19 19 N 1.31517 * 119.99946 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99725 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47381 * 89.99616 * 20 18 16 22 22 H 1.48501 * 109.46861 * 209.99587 * 20 18 16 23 23 H 1.48502 * 109.47272 * 329.99424 * 20 18 16 24 24 C 1.47082 * 118.23464 * 51.45749 * 6 5 4 25 25 H 1.08998 * 109.62529 * 68.25719 * 24 6 5 26 26 C 1.53002 * 109.62784 * 188.83636 * 24 6 5 27 27 C 1.46897 * 111.00050 * 58.25282 * 3 2 1 28 28 H 1.08996 * 109.47188 * 60.00290 * 1 2 3 29 29 H 1.08999 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46797 * 299.99924 * 1 2 3 31 31 H 1.09002 * 109.47059 * 239.99655 * 2 1 3 32 32 H 1.09004 * 109.47398 * 120.00034 * 2 1 3 33 33 H 1.08991 * 109.49895 * 67.29334 * 4 3 2 34 34 H 1.09002 * 109.51584 * 307.21697 * 4 3 2 35 35 H 1.09006 * 109.62620 * 186.45918 * 5 4 3 36 36 H 1.08997 * 109.79282 * 65.97503 * 5 4 3 37 37 H 1.07994 * 120.03551 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.83871 * 180.24941 * 11 10 9 39 39 H 1.08001 * 119.79666 * 179.69330 * 12 11 10 40 40 H 1.08006 * 119.96138 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99730 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.47214 * 53.66113 * 26 24 6 43 43 H 1.08994 * 109.47274 * 173.66920 * 26 24 6 44 44 H 1.09003 * 109.46966 * 293.66875 * 26 24 6 45 45 H 1.09000 * 109.49641 * 292.71247 * 27 3 2 46 46 H 1.09003 * 109.49212 * 52.78933 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0668 -1.2533 5 6 2.3499 3.4397 -1.2907 6 7 1.9943 4.1707 -0.0649 7 6 1.5036 5.4245 -0.1249 8 8 1.1521 5.9891 0.8930 9 6 1.3988 6.1142 -1.4249 10 6 2.3592 5.8963 -2.4153 11 6 2.2527 6.5396 -3.6296 12 6 1.2025 7.4111 -3.8699 13 6 0.2488 7.6403 -2.8987 14 6 0.3371 6.9972 -1.6715 15 8 -0.5980 7.2213 -0.7166 16 6 -1.5234 8.1667 -0.9759 17 1 -1.5474 8.6480 -1.9425 18 6 -2.4447 8.5211 -0.0017 19 7 -3.3472 9.4438 -0.2546 20 14 -2.4028 7.6890 1.6702 21 1 -1.5160 8.4550 2.5824 22 1 -3.7752 7.6449 2.2357 23 1 -1.8839 6.3055 1.5217 24 6 2.1940 3.4992 1.2283 25 1 3.2606 3.3769 1.4165 26 6 1.5638 4.3351 2.3441 27 6 1.5149 2.1218 1.1662 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5892 2.1946 -1.3087 34 1 2.0098 1.4698 -2.0997 35 1 2.0040 3.9959 -2.1621 36 1 3.4315 3.3148 -1.3418 37 1 3.1821 5.2217 -2.2311 38 1 2.9939 6.3670 -4.3959 39 1 1.1300 7.9144 -4.8227 40 1 -0.5665 8.3213 -3.0934 41 1 -3.9918 9.6914 0.4267 42 1 0.5221 4.5421 2.0990 43 1 1.6135 3.7841 3.2832 44 1 2.1068 5.2748 2.4451 45 1 0.4360 2.2488 1.0772 46 1 1.7422 1.5644 2.0749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288448107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:13 Heat of formation + Delta-G solvation = 4.432002 kcal Electronic energy + Delta-G solvation = -28219.171664 eV Core-core repulsion = 24497.018219 eV Total energy + Delta-G solvation = -3722.153445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.52592 -39.12503 -37.82721 -36.65529 -34.87761 -33.02689 -32.46902 -30.76430 -29.98813 -29.29159 -27.74571 -25.85075 -25.36815 -23.65526 -23.17783 -22.04856 -21.12218 -20.53190 -18.97458 -17.99962 -17.15877 -16.50079 -15.95946 -15.54475 -15.47893 -15.10416 -14.93654 -14.65995 -14.21220 -14.13310 -13.82222 -13.74098 -13.68990 -13.11495 -12.84969 -12.47648 -12.37386 -12.33072 -12.25374 -12.08689 -12.01642 -11.85181 -11.46662 -11.28980 -11.20005 -11.11435 -10.92548 -10.83380 -10.73088 -10.58569 -10.14076 -9.54426 -8.91769 -8.64770 -8.59150 -8.29401 -8.15911 -7.49895 -6.48768 -4.14377 1.61190 2.14672 3.21142 3.26744 3.35123 3.44000 3.54414 3.78985 4.28491 4.41148 4.69913 4.71431 4.75046 4.92696 4.98828 5.06358 5.08707 5.16232 5.20998 5.31874 5.36000 5.40761 5.43424 5.58188 5.61615 5.65663 5.66948 5.76347 5.81260 5.86757 5.89675 5.96409 6.05414 6.06017 6.35417 6.40120 6.51437 6.63389 6.83772 6.84494 6.88133 6.97218 7.03428 7.13926 7.45987 7.65389 7.84021 7.93371 8.80624 8.86884 9.48347 10.56957 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.005253 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.352017 B = 5328.763092 C = 6636.426287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 N -0.537 5.537 4 C 0.037 3.963 5 C 0.101 3.899 6 N -0.617 5.617 7 C 0.571 3.429 8 O -0.515 6.515 9 C -0.222 4.222 10 C -0.051 4.051 11 C -0.219 4.219 12 C -0.053 4.053 13 C -0.226 4.226 14 C 0.201 3.799 15 O -0.180 6.180 16 C -0.394 4.394 17 H 0.109 0.891 18 C 0.071 3.929 19 N -0.871 5.871 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.253 1.253 24 C 0.154 3.846 25 H 0.073 0.927 26 C -0.139 4.139 27 C 0.042 3.958 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.281 0.719 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.042 -16.300 -2.458 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.076 4.076 3 N -0.261 5.261 4 C -0.092 4.092 5 C -0.022 4.022 6 N -0.353 5.353 7 C 0.362 3.638 8 O -0.391 6.391 9 C -0.227 4.227 10 C -0.069 4.069 11 C -0.238 4.238 12 C -0.071 4.071 13 C -0.245 4.245 14 C 0.144 3.856 15 O -0.081 6.081 16 C -0.469 4.469 17 H 0.126 0.874 18 C -0.134 4.134 19 N -0.507 5.507 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.177 1.177 24 C 0.050 3.950 25 H 0.091 0.909 26 C -0.196 4.196 27 C -0.087 4.087 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.087 -15.944 -1.529 19.480 hybrid contribution -1.071 -0.226 0.371 1.155 sum 10.017 -16.171 -1.158 19.057 Atomic orbital electron populations 1.22452 0.98158 1.02242 1.02476 1.22157 0.92969 0.89843 1.02661 1.62202 1.59238 1.02081 1.02533 1.22559 0.99026 0.95298 0.92316 1.22303 0.99610 0.91463 0.88821 1.48059 1.66090 1.14632 1.06520 1.18209 0.76260 0.80305 0.89043 1.90835 1.47375 1.65946 1.34962 1.18876 0.99991 1.07635 0.96206 1.21015 0.96583 0.97072 0.92267 1.20572 1.01442 1.03836 0.97948 1.20965 0.93105 0.95332 0.97743 1.21274 1.03080 1.06141 0.93980 1.18956 0.87161 0.91233 0.88238 1.83665 1.34603 1.51295 1.38579 1.20859 1.08164 1.15167 1.02692 0.87422 1.24471 0.94215 0.95306 0.99434 1.69634 1.16755 1.28522 1.35765 0.86124 0.76695 0.81973 0.81990 1.19576 1.21203 1.17697 1.21338 0.99296 0.90583 0.83734 0.90895 1.22203 1.03443 0.99239 0.94748 1.22704 0.98001 0.94418 0.93556 0.92397 0.92154 0.92319 0.90698 0.90722 0.93906 0.89777 0.87466 0.91075 0.85827 0.86909 0.86841 0.84456 0.90851 0.90915 0.94256 0.90364 0.93765 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.22 37.16 0.34 -1.46 16 2 C 0.05 0.46 6.07 -3.83 -0.02 0.44 16 3 N -0.54 -5.91 4.83 -234.02 -1.13 -7.04 16 4 C 0.04 0.41 5.16 -3.70 -0.02 0.39 16 5 C 0.10 1.26 4.91 -3.60 -0.02 1.24 16 6 N -0.62 -9.84 3.00 -165.87 -0.50 -10.34 16 7 C 0.57 11.61 7.17 -12.47 -0.09 11.52 16 8 O -0.52 -12.30 11.44 -12.57 -0.14 -12.44 16 9 C -0.22 -4.49 5.35 -104.81 -0.56 -5.05 16 10 C -0.05 -0.81 7.36 -39.20 -0.29 -1.10 16 11 C -0.22 -3.32 10.03 -39.61 -0.40 -3.72 16 12 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 13 C -0.23 -4.71 9.16 -39.44 -0.36 -5.07 16 14 C 0.20 4.69 6.63 -38.60 -0.26 4.44 16 15 O -0.18 -4.91 7.22 -17.05 -0.12 -5.03 16 16 C -0.39 -11.21 9.95 30.90 0.31 -10.90 16 17 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 18 C 0.07 2.03 5.49 -17.52 -0.10 1.93 16 19 N -0.87 -25.25 13.96 55.48 0.77 -24.48 16 20 Si 0.91 23.23 28.62 -169.99 -4.86 18.37 16 21 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.25 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.15 2.20 3.67 -67.25 -0.25 1.96 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 C -0.14 -2.26 7.62 37.16 0.28 -1.97 16 27 C 0.04 0.52 4.26 -3.46 -0.01 0.50 16 28 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 31 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.55 6.83 -51.93 -0.35 0.20 16 34 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 35 H 0.11 1.37 4.46 -51.93 -0.23 1.14 16 36 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 37 H 0.12 1.60 5.85 -52.49 -0.31 1.29 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.14 2.99 5.64 -52.48 -0.30 2.69 16 41 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.43 6.82 -51.93 -0.35 1.08 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.42 6.73 -51.93 -0.35 1.07 16 45 H 0.04 0.62 6.70 -51.93 -0.35 0.27 16 46 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -31.65 353.39 -9.05 -40.70 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.56 Total: 3.08 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.83 Total: -8.15 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.85 Total: -41.85 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.27 Total: -17.47 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.86 Total: 18.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.65 -9.05 -40.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288448107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.131 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds