Wall clock time and date at job start Tue Mar 31 2020 12:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00070 * 2 1 4 4 N 1.46902 * 109.47142 * 125.22749 * 3 2 1 5 5 C 1.46895 * 111.00031 * 301.58653 * 4 3 2 6 6 C 1.50704 * 109.46818 * 297.07133 * 5 4 3 7 7 H 1.07994 * 120.00316 * 2.39011 * 6 5 4 8 8 C 1.37884 * 119.99686 * 182.39013 * 6 5 4 9 9 N 1.31509 * 119.99999 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99645 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46943 * 60.00524 * 10 8 6 12 12 H 1.48508 * 109.47022 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47751 * 300.00112 * 10 8 6 14 14 C 1.46899 * 110.99791 * 65.53811 * 4 3 2 15 15 H 1.09000 * 109.47135 * 297.06424 * 14 4 3 16 16 C 1.53000 * 109.47220 * 177.06460 * 14 4 3 17 17 C 1.50702 * 109.47229 * 57.06359 * 14 4 3 18 18 O 1.21298 * 119.99933 * 28.26687 * 17 14 4 19 19 N 1.34770 * 120.00065 * 208.26335 * 17 14 4 20 20 C 1.40112 * 119.99704 * 185.13498 * 19 17 14 21 21 C 1.38847 * 120.01859 * 32.83288 * 20 19 17 22 22 C 1.38087 * 119.98635 * 179.71748 * 21 20 19 23 23 C 1.38722 * 120.01422 * 0.25399 * 22 21 20 24 24 O 1.35974 * 119.98148 * 180.02562 * 23 22 21 25 25 C 1.42899 * 116.99770 * 180.02562 * 24 23 22 26 26 C 1.38717 * 120.03311 * 0.02562 * 23 22 21 27 27 C 1.38094 * 120.01387 * 359.97438 * 26 23 22 28 28 H 1.08000 * 119.99611 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.99834 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46912 * 5.23117 * 3 2 1 32 32 H 1.09000 * 109.46908 * 245.22989 * 3 2 1 33 33 H 1.08994 * 109.47491 * 57.07035 * 5 4 3 34 34 H 1.09006 * 109.47085 * 177.07688 * 5 4 3 35 35 H 0.97002 * 120.00247 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47102 * 300.00577 * 16 14 4 37 37 H 1.09003 * 109.46764 * 59.99455 * 16 14 4 38 38 H 1.08996 * 109.47303 * 180.02562 * 16 14 4 39 39 H 0.96997 * 120.00379 * 5.13494 * 19 17 14 40 40 H 1.08002 * 120.00140 * 359.97438 * 21 20 19 41 41 H 1.08007 * 119.99036 * 180.27418 * 22 21 20 42 42 H 1.09004 * 109.47115 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47100 * 299.99811 * 25 24 23 44 44 H 1.09005 * 109.47389 * 59.99870 * 25 24 23 45 45 H 1.07995 * 119.99410 * 180.02562 * 26 23 22 46 46 H 1.07997 * 120.01186 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0003 1.3297 1.1314 5 6 2.2905 1.1602 2.4062 6 6 1.3460 2.3162 2.6129 7 1 1.2512 3.0785 1.8538 8 6 0.6029 2.4006 3.7713 9 7 0.7187 1.4726 4.6959 10 14 -0.5673 3.8339 4.0278 11 1 -1.5856 3.8410 2.9470 12 1 -1.2428 3.6922 5.3427 13 1 0.1957 5.1075 3.9975 14 6 4.0459 0.3104 0.9713 15 1 3.5908 -0.6801 0.9719 16 6 5.0414 0.4149 2.1284 17 6 4.7671 0.5311 -0.3334 18 8 4.8408 1.6464 -0.8045 19 7 5.3303 -0.5107 -0.9766 20 6 6.0920 -0.2917 -2.1320 21 6 6.8352 0.8737 -2.2635 22 6 7.5903 1.0862 -3.3999 23 6 7.6023 0.1380 -4.4124 24 8 8.3465 0.3477 -5.5310 25 6 8.3117 -0.6700 -6.5335 26 6 6.8554 -1.0239 -4.2844 27 6 6.0999 -1.2377 -3.1484 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3589 2.1314 0.0937 32 1 2.6181 1.4045 -0.9331 33 1 1.7254 0.2284 2.3864 34 1 3.0121 1.1302 3.2227 35 1 0.1956 1.5318 5.5107 36 1 5.4964 1.4054 2.1280 37 1 4.5196 0.2553 3.0721 38 1 5.8175 -0.3411 2.0095 39 1 5.2083 -1.4121 -0.6398 40 1 6.8259 1.6120 -1.4752 41 1 8.1719 1.9908 -3.5003 42 1 8.9465 -0.3778 -7.3700 43 1 8.6742 -1.6076 -6.1121 44 1 7.2876 -0.8007 -6.8833 45 1 6.8656 -1.7618 -5.0728 46 1 5.5188 -2.1425 -3.0486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292356636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:52 Heat of formation + Delta-G solvation = -6.697442 kcal Electronic energy + Delta-G solvation = -26653.290197 eV Core-core repulsion = 22930.654143 eV Total energy + Delta-G solvation = -3722.636054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72187 -39.74954 -37.85638 -36.65732 -34.31171 -33.03727 -32.65318 -31.24049 -30.19343 -29.00879 -27.44285 -27.18508 -24.38501 -24.13351 -23.01607 -22.17030 -20.82568 -20.14329 -18.84119 -18.34089 -17.36585 -16.93707 -16.29111 -16.03093 -15.90544 -15.41840 -15.01684 -14.77908 -14.48506 -14.20536 -13.89525 -13.77491 -13.53048 -13.21940 -12.97942 -12.88357 -12.47944 -12.26174 -12.17122 -12.13371 -11.90561 -11.56168 -11.18307 -11.10547 -11.01463 -10.91417 -10.73839 -10.56623 -10.44434 -9.98734 -9.90448 -9.41757 -9.17924 -9.05753 -8.68503 -8.40001 -7.78008 -7.26692 -6.01697 -4.01093 1.20340 1.24700 2.80156 2.89677 3.02121 3.16518 3.35213 3.38875 3.42942 3.70452 4.44003 4.58581 4.71486 4.80075 4.85724 4.86192 4.91313 5.14041 5.18592 5.32377 5.34874 5.42408 5.48334 5.50235 5.58779 5.78411 5.81274 5.86127 5.93066 6.14454 6.16648 6.19556 6.29998 6.41062 6.43059 6.58038 6.71668 6.80381 7.14283 7.21238 7.23696 7.30356 7.41939 7.44857 7.78986 8.03515 8.16765 8.35061 8.53072 9.04638 9.61971 11.09461 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.002665 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.748570 B =10505.214501 C =10659.637905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.183 4.183 3 C 0.086 3.914 4 N -0.506 5.506 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.068 3.932 15 H 0.050 0.950 16 C -0.140 4.140 17 C 0.520 3.480 18 O -0.498 6.498 19 N -0.680 5.680 20 C 0.123 3.877 21 C -0.082 4.082 22 C -0.130 4.130 23 C 0.103 3.897 24 O -0.320 6.320 25 C 0.028 3.972 26 C -0.189 4.189 27 C -0.112 4.112 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.066 0.934 33 H -0.003 1.003 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.408 0.592 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.129 0.871 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.932 -9.743 -16.864 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.203 4.203 3 C -0.042 4.042 4 N -0.230 5.230 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.044 4.044 15 H 0.068 0.932 16 C -0.198 4.198 17 C 0.307 3.693 18 O -0.369 6.369 19 N -0.327 5.327 20 C 0.028 3.972 21 C -0.102 4.102 22 C -0.149 4.149 23 C 0.058 3.942 24 O -0.233 6.233 25 C -0.067 4.067 26 C -0.208 4.208 27 C -0.132 4.132 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.015 0.985 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.243 0.757 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.147 0.853 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.251 -8.301 -16.969 23.075 hybrid contribution -1.371 -1.006 0.324 1.731 sum 11.880 -9.308 -16.646 22.468 Atomic orbital electron populations 1.23671 0.95963 1.01136 1.00406 1.23519 0.96871 0.99448 1.00459 1.21350 0.94595 0.94519 0.93760 1.62348 1.12314 1.43789 1.04579 1.19862 0.92740 0.96467 0.84250 1.21053 1.21850 1.08035 1.03050 0.92016 1.24923 0.97269 0.96291 0.95896 1.69932 1.41670 1.33959 1.08315 0.86599 0.80985 0.82938 0.77133 1.20348 1.21439 1.20155 1.21517 0.95050 0.96276 0.91564 0.93209 1.21812 0.97596 1.02475 0.97884 1.21125 0.77997 0.84216 0.85934 1.90689 1.56927 1.23369 1.65951 1.43759 1.51610 1.11195 1.26150 1.17706 0.94917 0.96501 0.88032 1.21066 0.93727 0.97253 0.98187 1.20337 1.02479 0.99465 0.92593 1.18985 0.93256 0.94501 0.87449 1.86078 1.65025 1.45435 1.26798 1.23020 1.02280 0.91110 0.90300 1.20961 1.01845 0.98154 0.99823 1.20668 1.00421 0.99997 0.92135 0.89727 0.88368 0.89134 0.89312 0.91567 0.98509 0.94369 0.92960 0.91186 0.90034 0.92900 0.75691 0.83787 0.84919 0.88426 0.92788 0.92752 0.85345 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 14.32 29.01 0.42 -2.69 16 2 C -0.18 -3.36 7.51 -36.02 -0.27 -3.63 16 3 C 0.09 1.73 5.18 -4.97 -0.03 1.71 16 4 N -0.51 -10.82 4.34 -230.91 -1.00 -11.83 16 5 C 0.19 4.76 4.23 -4.98 -0.02 4.74 16 6 C -0.50 -13.80 8.56 -34.44 -0.29 -14.10 16 7 H 0.06 1.71 6.79 -52.49 -0.36 1.36 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.07 1.17 2.19 -68.86 -0.15 1.02 16 15 H 0.05 0.79 6.74 -51.93 -0.35 0.44 16 16 C -0.14 -2.22 8.93 37.16 0.33 -1.89 16 17 C 0.52 8.40 5.63 -10.99 -0.06 8.34 16 18 O -0.50 -9.72 13.05 5.54 0.07 -9.65 16 19 N -0.68 -8.47 5.35 -9.83 -0.05 -8.53 16 20 C 0.12 1.56 6.29 -83.62 -0.53 1.03 16 21 C -0.08 -1.12 8.66 -39.41 -0.34 -1.46 16 22 C -0.13 -1.60 9.98 -39.46 -0.39 -1.99 16 23 C 0.10 1.19 6.69 -39.23 -0.26 0.92 16 24 O -0.32 -3.38 10.50 -19.66 -0.21 -3.58 16 25 C 0.03 0.18 9.81 101.05 0.99 1.17 16 26 C -0.19 -1.89 9.03 -39.46 -0.36 -2.25 16 27 C -0.11 -1.17 9.96 -39.41 -0.39 -1.56 16 28 H 0.08 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.10 1.81 7.84 -52.49 -0.41 1.40 16 30 H 0.09 1.51 6.99 -52.49 -0.37 1.14 16 31 H 0.09 1.96 6.30 -51.93 -0.33 1.63 16 32 H 0.07 1.32 6.04 -51.93 -0.31 1.01 16 33 H 0.00 -0.07 6.93 -51.93 -0.36 -0.43 16 34 H 0.04 1.00 5.93 -51.93 -0.31 0.70 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.41 6.24 -51.93 -0.32 1.09 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.41 3.80 8.82 -40.82 -0.36 3.44 16 40 H 0.14 2.17 6.37 -52.49 -0.33 1.83 16 41 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 44 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 45 H 0.13 0.95 6.29 -52.49 -0.33 0.62 16 46 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -32.43 373.31 -7.91 -40.34 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.61 Total: 5.50 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.46 Total: -9.14 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.32 Total: -45.72 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.13 Total: -13.23 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.43 -7.91 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292356636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.644 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds