Wall clock time and date at job start Tue Mar 31 2020 13:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47111 * 2 1 4 4 C 1.46500 * 119.99935 * 270.00424 * 3 2 1 5 5 C 1.50698 * 109.46701 * 269.99561 * 4 3 2 6 6 H 1.08000 * 120.00419 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99773 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00106 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99907 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47322 * 89.99828 * 9 7 5 11 11 H 1.48506 * 109.46750 * 209.99912 * 9 7 5 12 12 H 1.48499 * 109.47380 * 329.99651 * 9 7 5 13 13 C 1.34775 * 120.00009 * 89.99918 * 3 2 1 14 14 O 1.21278 * 120.00011 * 180.02562 * 13 3 2 15 15 C 1.50704 * 120.00050 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.46995 * 179.29650 * 15 13 3 17 17 C 1.47919 * 110.99915 * 284.39604 * 16 15 13 18 18 C 1.54595 * 102.62228 * 265.53194 * 17 16 15 19 19 H 1.09006 * 110.73503 * 216.15135 * 18 17 16 20 20 C 1.52997 * 110.89424 * 92.90579 * 18 17 16 21 21 O 1.42898 * 109.47403 * 180.50020 * 20 18 17 22 22 C 1.51574 * 102.84895 * 334.49122 * 18 17 16 23 23 C 1.37914 * 131.56576 * 196.02713 * 22 18 17 24 24 C 1.38311 * 120.07922 * 179.58518 * 23 22 18 25 25 C 1.38300 * 119.88445 * 359.94325 * 24 23 22 26 26 C 1.37919 * 120.26531 * 0.15463 * 25 24 23 27 27 C 1.38976 * 107.95104 * 16.10606 * 22 18 17 28 28 H 1.08997 * 109.46575 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46944 * 299.99881 * 1 2 3 30 30 H 1.09000 * 109.47417 * 59.99872 * 1 2 3 31 31 H 1.08996 * 109.47349 * 240.00173 * 2 1 3 32 32 H 1.09000 * 109.47417 * 120.00128 * 2 1 3 33 33 H 1.09002 * 109.47454 * 29.99903 * 4 3 2 34 34 H 1.08999 * 109.46826 * 149.99612 * 4 3 2 35 35 H 0.96995 * 120.00126 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46984 * 59.29048 * 15 13 3 37 37 H 1.09000 * 109.46842 * 299.29789 * 15 13 3 38 38 H 1.09004 * 110.77553 * 147.24709 * 17 16 15 39 39 H 1.08997 * 110.77502 * 23.81515 * 17 16 15 40 40 H 1.08998 * 109.47140 * 300.49642 * 20 18 17 41 41 H 1.09006 * 109.47115 * 60.49727 * 20 18 17 42 42 H 0.96696 * 114.00463 * 180.02562 * 21 20 18 43 43 H 1.07992 * 119.96125 * 359.60238 * 23 22 18 44 44 H 1.07998 * 120.05581 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.87083 * 180.18053 * 25 24 23 46 46 H 1.07995 * 119.89963 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0966 -3.4171 10 1 5.9760 0.8761 -4.2606 11 1 6.3927 3.2643 -4.1994 12 1 6.7735 1.9158 -2.2202 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3264 2.2003 3.5888 17 6 3.7916 2.3099 3.7600 18 6 4.0873 1.2378 4.8339 19 1 4.8802 1.5709 5.5037 20 6 4.4548 -0.0979 4.1848 21 8 4.7102 -1.0679 5.2026 22 6 2.7692 1.1300 5.5745 23 6 2.4493 0.5795 6.7979 24 6 1.1452 0.6203 7.2567 25 6 0.1622 1.2153 6.4871 26 6 0.4764 1.7656 5.2621 27 6 1.7867 1.7200 4.7883 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1383 35 1 3.6753 3.5171 -4.4435 36 1 2.6136 0.4120 2.5244 37 1 0.9418 1.0224 2.5357 38 1 4.0658 3.3022 4.1183 39 1 4.3081 2.0772 2.8288 40 1 3.6294 -0.4370 3.5588 41 1 5.3472 0.0293 3.5719 42 1 4.9501 -1.9408 4.8627 43 1 3.2181 0.1162 7.3984 44 1 0.8950 0.1887 8.2146 45 1 -0.8555 1.2496 6.8469 46 1 -0.2958 2.2291 4.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292622514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:05 Heat of formation + Delta-G solvation = -33.964697 kcal Electronic energy + Delta-G solvation = -27579.440878 eV Core-core repulsion = 23855.622427 eV Total energy + Delta-G solvation = -3723.818451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19227 -38.88845 -37.19700 -36.38465 -35.20699 -32.92879 -32.52585 -30.23390 -29.99652 -29.47751 -28.09544 -26.53435 -24.66325 -23.05409 -22.85353 -22.46564 -21.02000 -20.63618 -18.38202 -17.58290 -16.91959 -16.51487 -16.41669 -16.16590 -15.56399 -15.18214 -14.98456 -14.73582 -14.53389 -14.31928 -13.68951 -13.55308 -13.33376 -13.30300 -12.87166 -12.65262 -12.49127 -12.31827 -12.09429 -12.01137 -11.82613 -11.56886 -11.49142 -11.21229 -11.09496 -10.93027 -10.86038 -10.76559 -10.55031 -10.14874 -10.09026 -9.69145 -9.61113 -8.83853 -8.73627 -8.45486 -7.87874 -7.67005 -6.06101 -4.11054 1.25657 1.36863 3.27353 3.34038 3.36284 3.41320 3.44927 3.72030 3.91495 4.04019 4.41255 4.45764 4.79442 4.87217 4.94091 4.98391 5.01921 5.09128 5.20538 5.25813 5.28374 5.30787 5.33402 5.46025 5.55550 5.57100 5.62482 5.69212 5.75772 5.87969 5.93720 5.99674 6.05461 6.19766 6.32737 6.41519 6.45653 6.48759 6.71294 6.85639 7.07476 7.28396 7.40675 7.44674 7.54084 7.90391 8.21817 8.41180 8.88554 9.10467 9.54107 11.01933 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.003740 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.456127 B = 7485.664914 C = 8200.078413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.505 3.495 14 O -0.520 6.520 15 C 0.035 3.965 16 N -0.470 5.470 17 C 0.067 3.933 18 C -0.083 4.083 19 H 0.097 0.903 20 C 0.085 3.915 21 O -0.569 6.569 22 C -0.126 4.126 23 C -0.074 4.074 24 C -0.140 4.140 25 C -0.104 4.104 26 C -0.115 4.115 27 C 0.094 3.906 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.378 0.622 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -10.130 18.313 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.395 6.395 15 C -0.093 4.093 16 N -0.186 5.186 17 C -0.060 4.060 18 C -0.102 4.102 19 H 0.115 0.885 20 C 0.007 3.993 21 O -0.374 6.374 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.159 4.159 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.225 0.775 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.162 -8.360 18.287 20.533 hybrid contribution 1.357 -1.378 -0.680 2.050 sum -2.805 -9.738 17.606 20.314 Atomic orbital electron populations 1.22227 0.96740 1.01421 1.02418 1.21406 0.93615 0.84354 1.02428 1.48263 1.64161 1.13156 1.07644 1.19253 0.96172 0.93681 0.77995 1.21413 0.96934 1.31874 1.06276 0.92609 1.24932 0.97786 0.94920 0.96428 1.69927 1.35676 1.33351 1.14302 0.86518 0.84730 0.77694 0.78581 1.20679 1.21062 1.19959 1.20065 0.79237 0.87168 0.84572 1.90685 1.44614 1.17434 1.86773 1.22375 1.02788 0.93962 0.90204 1.59715 1.11054 1.46281 1.01507 1.23151 0.85943 0.98622 0.98291 1.21445 0.96020 0.95004 0.97759 0.88482 1.22324 0.99201 0.88225 0.89502 1.86455 1.92233 1.23434 1.35300 1.20813 0.95443 0.99879 0.96732 1.20392 0.96350 0.97978 0.94516 1.21029 0.92839 1.01823 1.00211 1.20898 0.99311 0.98028 0.94035 1.20508 0.94487 1.01857 0.96661 1.19659 0.94059 0.94919 0.91588 0.92176 0.93106 0.91878 0.89858 0.92227 0.95059 0.93855 0.92701 0.91520 0.88375 0.88328 0.88948 0.93504 0.92714 0.77483 0.86159 0.86044 0.85798 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.65 5.94 -4.04 -0.02 1.63 16 3 N -0.60 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.50 10.34 7.21 -10.98 -0.08 10.26 16 14 O -0.52 -12.97 15.30 5.56 0.09 -12.89 16 15 C 0.04 0.55 3.78 -4.98 -0.02 0.53 16 16 N -0.47 -7.42 4.64 -170.37 -0.79 -8.21 16 17 C 0.07 0.98 5.89 -2.42 -0.01 0.97 16 18 C -0.08 -1.03 3.31 -90.50 -0.30 -1.33 16 19 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 20 C 0.09 0.96 6.24 37.16 0.23 1.19 16 21 O -0.57 -5.93 13.48 -35.23 -0.47 -6.40 16 22 C -0.13 -1.64 5.40 -104.04 -0.56 -2.20 16 23 C -0.07 -0.86 10.03 -39.67 -0.40 -1.26 16 24 C -0.14 -1.44 10.06 -39.53 -0.40 -1.83 16 25 C -0.10 -1.08 10.02 -39.68 -0.40 -1.48 16 26 C -0.12 -1.43 10.05 -39.27 -0.39 -1.82 16 27 C 0.09 1.32 5.48 -83.40 -0.46 0.86 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.64 7.24 -51.93 -0.38 0.27 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.77 6.42 -51.93 -0.33 0.44 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 0.93 4.45 -51.93 -0.23 0.70 16 37 H 0.10 1.38 7.04 -51.93 -0.37 1.01 16 38 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.09 1.48 6.97 -51.93 -0.36 1.11 16 40 H 0.05 0.54 5.63 -51.93 -0.29 0.25 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.38 2.33 9.12 45.56 0.42 2.75 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -34.07 373.17 -9.27 -43.33 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.12 Total: 3.69 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.88 Total: -3.29 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.48 Total: -46.59 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.39 Total: -19.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.07 -9.27 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292622514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.367 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds