Wall clock time and date at job start Tue Mar 31 2020 13:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47116 * 2 1 4 4 C 1.36933 * 120.00152 * 275.93159 * 3 2 1 5 5 H 1.08000 * 119.99914 * 328.70797 * 4 3 2 6 6 C 1.38810 * 120.00253 * 148.71080 * 4 3 2 7 7 N 1.31615 * 119.99971 * 340.35445 * 6 4 3 8 8 Si 1.86805 * 119.99964 * 160.35631 * 6 4 3 9 9 H 1.48498 * 109.47332 * 90.00115 * 8 6 4 10 10 H 1.48503 * 109.47056 * 210.00107 * 8 6 4 11 11 H 1.48493 * 109.47191 * 329.99535 * 8 6 4 12 12 C 1.46500 * 120.00083 * 95.92782 * 3 2 1 13 13 H 1.09002 * 109.47447 * 183.96856 * 12 3 2 14 14 C 1.53005 * 109.47054 * 303.96533 * 12 3 2 15 15 C 1.50700 * 109.47123 * 63.96487 * 12 3 2 16 16 O 1.21277 * 120.00158 * 0.02562 * 15 12 3 17 17 N 1.34780 * 119.99898 * 180.02562 * 15 12 3 18 18 C 1.46508 * 119.99724 * 180.02562 * 17 15 12 19 19 H 1.08993 * 109.43678 * 325.08437 * 18 17 15 20 20 C 1.53066 * 109.43364 * 205.20361 * 18 17 15 21 21 C 1.53407 * 108.29355 * 191.69100 * 20 18 17 22 22 O 1.42824 * 108.39422 * 64.68976 * 21 20 18 23 23 C 1.35843 * 117.86632 * 310.84348 * 22 21 20 24 24 C 1.39145 * 118.50369 * 196.96177 * 23 22 21 25 25 C 1.37964 * 120.21530 * 180.45047 * 24 23 22 26 26 C 1.38289 * 119.96133 * 0.02562 * 25 24 23 27 27 C 1.38101 * 119.98184 * 0.20123 * 26 25 24 28 28 C 1.38369 * 121.80413 * 17.27186 * 23 22 21 29 29 H 1.08995 * 109.47282 * 300.00317 * 1 2 3 30 30 H 1.09003 * 109.46537 * 60.00046 * 1 2 3 31 31 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47360 * 240.00001 * 2 1 3 33 33 H 1.09001 * 109.47276 * 119.99906 * 2 1 3 34 34 H 0.97003 * 120.00128 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47036 * 179.97438 * 14 12 3 36 36 H 1.08997 * 109.47123 * 299.99715 * 14 12 3 37 37 H 1.09002 * 109.46730 * 59.99884 * 14 12 3 38 38 H 0.96997 * 120.00279 * 359.97438 * 17 15 12 39 39 H 1.08995 * 109.70210 * 311.39242 * 20 18 17 40 40 H 1.09004 * 109.69940 * 71.99313 * 20 18 17 41 41 H 1.09007 * 109.68219 * 184.41227 * 21 20 18 42 42 H 1.08996 * 109.68424 * 304.96247 * 21 20 18 43 43 H 1.08001 * 119.89102 * 0.46781 * 24 23 22 44 44 H 1.08002 * 120.02111 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.00883 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.84403 * 179.73449 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1311 2.0676 -1.1795 5 1 2.3614 1.5384 -2.0923 6 6 1.9493 3.4436 -1.2020 7 7 1.3057 4.0385 -0.2200 8 14 2.6181 4.4509 -2.6259 9 1 1.5879 4.5472 -3.6911 10 1 2.9651 5.8136 -2.1483 11 1 3.8330 3.7930 -3.1701 12 6 2.3861 2.0282 1.2619 13 1 2.6566 3.0669 1.0724 14 6 1.1987 1.9781 2.2256 15 6 3.5597 1.3068 1.8729 16 8 4.0418 0.3471 1.3096 17 7 4.0735 1.7282 3.0455 18 6 5.2148 1.0272 3.6392 19 1 5.1366 -0.0388 3.4261 20 6 5.2138 1.2444 5.1544 21 6 6.5583 0.7591 5.7114 22 8 7.5921 1.5891 5.1803 23 6 7.6047 1.8081 3.8397 24 6 8.7701 2.2975 3.2578 25 6 8.8190 2.5415 1.9008 26 6 7.7070 2.3000 1.1151 27 6 6.5472 1.8187 1.6899 28 6 6.4948 1.5640 3.0504 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.1790 5.0000 -0.2355 35 1 1.4724 2.4591 3.1647 36 1 0.3499 2.4999 1.7837 37 1 0.9281 0.9394 2.4151 38 1 3.6882 2.4959 3.4960 39 1 5.0864 2.3044 5.3736 40 1 4.4017 0.6750 5.6067 41 1 6.5525 0.8307 6.7991 42 1 6.7278 -0.2752 5.4121 43 1 9.6392 2.4867 3.8704 44 1 9.7253 2.9210 1.4523 45 1 7.7443 2.4911 0.0527 46 1 5.6786 1.6349 1.0749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298250495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:56 Heat of formation + Delta-G solvation = -24.119618 kcal Electronic energy + Delta-G solvation = -28125.844901 eV Core-core repulsion = 24402.453365 eV Total energy + Delta-G solvation = -3723.391536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85159 -39.02483 -37.36893 -36.10073 -34.92763 -32.08316 -31.83686 -30.67512 -30.19454 -29.84337 -28.27046 -25.38371 -24.17939 -23.67206 -22.81100 -22.11572 -20.79612 -20.10979 -19.28166 -17.71873 -17.17329 -16.58857 -16.26172 -16.00844 -15.45941 -14.96713 -14.53608 -14.43891 -14.10258 -13.84464 -13.72086 -13.54458 -13.21003 -13.02301 -12.93499 -12.45499 -12.28873 -11.96169 -11.87900 -11.54261 -11.44283 -11.27376 -11.20229 -11.12699 -10.97530 -10.83483 -10.70746 -10.55845 -10.33119 -10.12558 -9.77873 -9.67497 -8.91047 -8.69096 -8.57406 -8.51919 -8.06675 -6.68199 -5.89003 -3.30931 1.43729 1.59301 3.22924 3.33762 3.42398 3.46196 3.47555 3.61795 4.00503 4.46866 4.52448 4.65685 4.74585 4.98420 5.04552 5.18481 5.29463 5.33651 5.39512 5.42550 5.56157 5.58819 5.65783 5.75917 5.90755 6.02896 6.19088 6.20437 6.25069 6.38891 6.43638 6.47492 6.56958 6.63294 6.66854 6.74223 6.79254 6.90859 6.95582 7.06400 7.20362 7.29889 7.38507 7.48136 7.79202 8.05323 8.42975 8.93857 9.17825 9.77739 10.32836 11.18408 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004705 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.634011 B = 5949.734638 C = 7141.149259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 N -0.560 5.560 4 C -0.247 4.247 5 H 0.065 0.935 6 C 0.005 3.995 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.170 3.830 13 H 0.125 0.875 14 C -0.139 4.139 15 C 0.490 3.510 16 O -0.537 6.537 17 N -0.734 5.734 18 C 0.189 3.811 19 H 0.095 0.905 20 C -0.166 4.166 21 C 0.067 3.933 22 O -0.319 6.319 23 C 0.130 3.870 24 C -0.160 4.160 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.062 4.062 28 C -0.171 4.171 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.255 0.745 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.398 0.602 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -3.478 12.228 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 N -0.279 5.279 4 C -0.377 4.377 5 H 0.083 0.917 6 C -0.193 4.193 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.058 3.942 13 H 0.143 0.857 14 C -0.198 4.198 15 C 0.278 3.722 16 O -0.413 6.413 17 N -0.388 5.388 18 C 0.083 3.917 19 H 0.112 0.888 20 C -0.204 4.204 21 C -0.009 4.009 22 O -0.234 6.234 23 C 0.085 3.915 24 C -0.179 4.179 25 C -0.106 4.106 26 C -0.173 4.173 27 C -0.080 4.080 28 C -0.174 4.174 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.232 0.768 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.019 -3.966 11.912 15.458 hybrid contribution -0.029 0.941 -0.568 1.099 sum 8.990 -3.025 11.344 14.787 Atomic orbital electron populations 1.22406 0.99808 0.98379 1.02026 1.20734 0.91200 0.86711 0.98855 1.43490 1.72072 1.10107 1.02228 1.19142 1.41325 0.89925 0.87305 0.91725 1.25032 0.98493 0.98005 0.97787 1.69976 1.40966 1.09508 1.33585 0.86380 0.79263 0.79530 0.82194 1.21277 1.21504 1.20403 1.20335 0.88619 0.99035 0.86248 0.85741 1.22090 1.00683 0.99848 0.97194 1.23384 0.85591 0.84382 0.78843 1.90576 1.62040 1.27920 1.60731 1.46500 1.33021 1.34624 1.24652 1.19517 0.83693 0.97775 0.90717 0.88757 1.22497 0.98754 1.03671 0.95453 1.22906 0.85300 0.93697 0.98986 1.85955 1.51349 1.66584 1.19489 1.18682 0.93452 0.97264 0.82089 1.20472 0.96302 1.06108 0.94981 1.20915 0.98418 0.98458 0.92795 1.21129 0.93489 1.02467 1.00250 1.21461 0.98832 0.93817 0.93869 1.20289 0.95235 1.06809 0.95018 0.93332 0.92802 0.95203 0.94415 0.94058 0.93531 0.94611 0.90116 0.94530 0.76813 0.89880 0.89164 0.87292 0.91655 0.85656 0.85760 0.85946 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 10.00 37.16 0.37 -2.97 16 2 C 0.15 3.34 5.02 -4.04 -0.02 3.32 16 3 N -0.56 -13.66 2.12 -166.98 -0.35 -14.02 16 4 C -0.25 -6.63 9.53 -15.06 -0.14 -6.77 16 5 H 0.07 1.77 7.90 -52.49 -0.41 1.35 16 6 C 0.01 0.14 4.83 -17.43 -0.08 0.06 16 7 N -0.90 -23.88 11.11 55.49 0.62 -23.27 16 8 Si 0.90 21.18 29.60 -169.99 -5.03 16.15 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.17 3.72 2.22 -69.08 -0.15 3.57 16 13 H 0.13 3.06 5.75 -51.93 -0.30 2.76 16 14 C -0.14 -2.68 7.94 37.16 0.30 -2.39 16 15 C 0.49 9.82 5.41 -10.98 -0.06 9.76 16 16 O -0.54 -12.22 12.92 5.56 0.07 -12.15 16 17 N -0.73 -11.63 4.75 -54.86 -0.26 -11.89 16 18 C 0.19 2.71 2.70 -69.01 -0.19 2.53 16 19 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 20 C -0.17 -1.71 5.67 -26.49 -0.15 -1.87 16 21 C 0.07 0.64 7.03 37.37 0.26 0.91 16 22 O -0.32 -4.11 10.27 -19.25 -0.20 -4.31 16 23 C 0.13 1.90 6.47 -39.20 -0.25 1.64 16 24 C -0.16 -2.16 9.94 -39.34 -0.39 -2.55 16 25 C -0.09 -1.17 10.04 -39.66 -0.40 -1.57 16 26 C -0.16 -2.42 10.04 -39.61 -0.40 -2.82 16 27 C -0.06 -1.09 9.07 -39.53 -0.36 -1.45 16 28 C -0.17 -2.71 5.56 -104.44 -0.58 -3.29 16 29 H 0.05 0.97 6.11 -51.93 -0.32 0.65 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.04 0.90 6.66 -51.93 -0.35 0.55 16 34 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 36 H 0.08 1.76 7.83 -51.93 -0.41 1.35 16 37 H 0.04 0.68 6.63 -51.93 -0.34 0.33 16 38 H 0.40 5.54 8.00 -40.82 -0.33 5.21 16 39 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 46 H 0.14 2.92 4.71 -52.49 -0.25 2.68 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -29.94 361.67 -8.80 -38.73 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.84 Total: 9.20 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.25 Total: -3.90 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.00 Total: -49.17 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.13 Total: -16.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.94 -8.80 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298250495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.615 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds