Wall clock time and date at job start Tue Mar 31 2020 13:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47116 * 2 1 4 4 C 1.36933 * 120.00152 * 275.93159 * 3 2 1 5 5 H 1.08000 * 119.99914 * 328.70797 * 4 3 2 6 6 C 1.38810 * 120.00253 * 148.71080 * 4 3 2 7 7 N 1.31615 * 119.99971 * 340.35445 * 6 4 3 8 8 Si 1.86805 * 119.99964 * 160.35631 * 6 4 3 9 9 H 1.48498 * 109.47332 * 90.00115 * 8 6 4 10 10 H 1.48503 * 109.47056 * 210.00107 * 8 6 4 11 11 H 1.48493 * 109.47191 * 329.99535 * 8 6 4 12 12 C 1.46500 * 120.00083 * 95.92782 * 3 2 1 13 13 H 1.09002 * 109.47447 * 183.96856 * 12 3 2 14 14 C 1.53005 * 109.47054 * 303.96533 * 12 3 2 15 15 C 1.50700 * 109.47123 * 63.96487 * 12 3 2 16 16 O 1.21277 * 120.00158 * 0.02562 * 15 12 3 17 17 N 1.34780 * 119.99898 * 180.02562 * 15 12 3 18 18 C 1.46508 * 119.99724 * 180.02562 * 17 15 12 19 19 H 1.08993 * 109.43678 * 325.08437 * 18 17 15 20 20 C 1.53066 * 109.43364 * 205.20361 * 18 17 15 21 21 C 1.53407 * 108.29355 * 191.69100 * 20 18 17 22 22 O 1.42824 * 108.39422 * 64.68976 * 21 20 18 23 23 C 1.35843 * 117.86632 * 310.84348 * 22 21 20 24 24 C 1.39145 * 118.50369 * 196.96177 * 23 22 21 25 25 C 1.37964 * 120.21530 * 180.45047 * 24 23 22 26 26 C 1.38289 * 119.96133 * 0.02562 * 25 24 23 27 27 C 1.38101 * 119.98184 * 0.20123 * 26 25 24 28 28 C 1.38369 * 121.80413 * 17.27186 * 23 22 21 29 29 H 1.08995 * 109.47282 * 300.00317 * 1 2 3 30 30 H 1.09003 * 109.46537 * 60.00046 * 1 2 3 31 31 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47360 * 240.00001 * 2 1 3 33 33 H 1.09001 * 109.47276 * 119.99906 * 2 1 3 34 34 H 0.97003 * 120.00128 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47036 * 179.97438 * 14 12 3 36 36 H 1.08997 * 109.47123 * 299.99715 * 14 12 3 37 37 H 1.09002 * 109.46730 * 59.99884 * 14 12 3 38 38 H 0.96997 * 120.00279 * 359.97438 * 17 15 12 39 39 H 1.08995 * 109.70210 * 311.39242 * 20 18 17 40 40 H 1.09004 * 109.69940 * 71.99313 * 20 18 17 41 41 H 1.09007 * 109.68219 * 184.41227 * 21 20 18 42 42 H 1.08996 * 109.68424 * 304.96247 * 21 20 18 43 43 H 1.08001 * 119.89102 * 0.46781 * 24 23 22 44 44 H 1.08002 * 120.02111 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.00883 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.84403 * 179.73449 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1311 2.0676 -1.1795 5 1 2.3614 1.5384 -2.0923 6 6 1.9493 3.4436 -1.2020 7 7 1.3057 4.0385 -0.2200 8 14 2.6181 4.4509 -2.6259 9 1 1.5879 4.5472 -3.6911 10 1 2.9651 5.8136 -2.1483 11 1 3.8330 3.7930 -3.1701 12 6 2.3861 2.0282 1.2619 13 1 2.6566 3.0669 1.0724 14 6 1.1987 1.9781 2.2256 15 6 3.5597 1.3068 1.8729 16 8 4.0418 0.3471 1.3096 17 7 4.0735 1.7282 3.0455 18 6 5.2148 1.0272 3.6392 19 1 5.1366 -0.0388 3.4261 20 6 5.2138 1.2444 5.1544 21 6 6.5583 0.7591 5.7114 22 8 7.5921 1.5891 5.1803 23 6 7.6047 1.8081 3.8397 24 6 8.7701 2.2975 3.2578 25 6 8.8190 2.5415 1.9008 26 6 7.7070 2.3000 1.1151 27 6 6.5472 1.8187 1.6899 28 6 6.4948 1.5640 3.0504 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.1790 5.0000 -0.2355 35 1 1.4724 2.4591 3.1647 36 1 0.3499 2.4999 1.7837 37 1 0.9281 0.9394 2.4151 38 1 3.6882 2.4959 3.4960 39 1 5.0864 2.3044 5.3736 40 1 4.4017 0.6750 5.6067 41 1 6.5525 0.8307 6.7991 42 1 6.7278 -0.2752 5.4121 43 1 9.6392 2.4867 3.8704 44 1 9.7253 2.9210 1.4523 45 1 7.7443 2.4911 0.0527 46 1 5.6786 1.6349 1.0749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298250495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:55 Heat of formation + Delta-G solvation = -41.851360 kcal Electronic energy + Delta-G solvation = -28126.613807 eV Core-core repulsion = 24402.453365 eV Total energy + Delta-G solvation = -3724.160442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97721 -40.51920 -38.43034 -37.76006 -36.34572 -33.82833 -33.45292 -31.90144 -31.44447 -31.06212 -30.09668 -26.53072 -26.06896 -24.72238 -24.32828 -23.36189 -22.48557 -21.24643 -20.82234 -18.98606 -18.79162 -17.86340 -17.49798 -17.35559 -16.79736 -16.46281 -16.08512 -15.89132 -15.47027 -15.40697 -15.19440 -14.79681 -14.57791 -14.26345 -14.16753 -14.07113 -13.59174 -13.42953 -13.28405 -13.10451 -12.98473 -12.92467 -12.77319 -12.49785 -12.41409 -12.28824 -12.17699 -12.04088 -11.76444 -11.65129 -11.56018 -11.44262 -10.58318 -10.49605 -10.07514 -9.78867 -9.17364 -8.60973 -7.90848 -5.35201 0.29886 0.42490 1.42692 1.46509 1.55423 1.87121 2.20286 2.38897 2.52688 2.82177 3.25970 3.56105 3.63463 3.65650 3.77465 3.99061 4.09446 4.18171 4.27069 4.41429 4.45009 4.48996 4.54920 4.60374 4.61294 4.67929 4.72278 4.86433 4.90660 4.93677 4.96994 4.98751 5.06566 5.08130 5.29541 5.30513 5.40085 5.45449 5.55592 5.61798 5.66388 5.68412 5.69771 5.80386 6.40723 6.44932 6.65801 7.13517 7.45853 7.85195 8.34773 9.13439 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004705 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.634011 B = 5949.734638 C = 7141.149259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 N -0.577 5.577 4 C -0.266 4.266 5 H 0.048 0.952 6 C -0.029 4.029 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.283 1.283 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.168 3.832 13 H 0.097 0.903 14 C -0.125 4.125 15 C 0.497 3.503 16 O -0.569 6.569 17 N -0.717 5.717 18 C 0.187 3.813 19 H 0.077 0.923 20 C -0.156 4.156 21 C 0.062 3.938 22 O -0.322 6.322 23 C 0.131 3.869 24 C -0.159 4.159 25 C -0.079 4.079 26 C -0.173 4.173 27 C -0.093 4.093 28 C -0.185 4.185 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.044 0.956 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.409 0.591 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.148 0.852 42 H 0.070 0.930 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.122 0.878 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 -3.242 14.910 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 N -0.296 5.296 4 C -0.396 4.396 5 H 0.065 0.935 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.209 1.209 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.057 3.943 13 H 0.114 0.886 14 C -0.184 4.184 15 C 0.284 3.716 16 O -0.448 6.448 17 N -0.370 5.370 18 C 0.082 3.918 19 H 0.095 0.905 20 C -0.193 4.193 21 C -0.013 4.013 22 O -0.236 6.236 23 C 0.085 3.915 24 C -0.178 4.178 25 C -0.097 4.097 26 C -0.191 4.191 27 C -0.111 4.111 28 C -0.187 4.187 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.165 0.835 42 H 0.088 0.912 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.140 0.860 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.260 -3.719 14.646 18.264 hybrid contribution -0.336 0.830 -1.349 1.619 sum 9.924 -2.889 13.297 16.841 Atomic orbital electron populations 1.22234 0.97972 1.00095 1.00885 1.20735 0.92562 0.85726 0.98300 1.43628 1.72942 1.10668 1.02384 1.19200 1.41868 0.90627 0.87940 0.93471 1.25534 0.98765 0.98449 0.99851 1.70066 1.41238 1.09404 1.34443 0.85569 0.78376 0.78210 0.80038 1.20933 1.21123 1.20968 1.20287 0.90358 0.97431 0.86218 0.88570 1.21911 0.98507 1.00292 0.97693 1.22775 0.85151 0.83859 0.79803 1.90559 1.62846 1.29490 1.61894 1.46199 1.33009 1.34537 1.23264 1.19676 0.82328 0.96352 0.93447 0.90545 1.22494 1.00350 1.04606 0.91891 1.23255 0.83767 0.93401 1.00890 1.85964 1.52488 1.67005 1.18148 1.18805 0.93181 0.96678 0.82854 1.20886 0.96841 1.04783 0.95275 1.21240 0.98546 0.97101 0.92767 1.21262 0.93947 1.03146 1.00734 1.21289 0.98525 0.96545 0.94756 1.20360 0.96492 1.07407 0.94422 0.93258 0.94993 0.91998 0.95804 0.93725 0.93668 0.91298 0.92683 0.93771 0.75518 0.89256 0.86732 0.83451 0.91202 0.82881 0.82407 0.86021 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 10.00 71.98 0.72 -5.41 16 2 C 0.15 6.92 5.02 86.38 0.43 7.36 16 3 N -0.58 -29.17 2.12 -682.19 -1.44 -30.61 16 4 C -0.27 -14.87 9.53 84.03 0.80 -14.06 16 5 H 0.05 2.73 7.90 -2.91 -0.02 2.71 16 6 C -0.03 -1.55 4.83 84.86 0.41 -1.14 16 7 N -0.91 -49.37 11.11 21.65 0.24 -49.13 16 8 Si 0.95 44.64 29.60 68.60 2.03 46.67 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 C 0.17 7.58 2.22 44.25 0.10 7.68 16 13 H 0.10 4.91 5.75 -2.39 -0.01 4.90 16 14 C -0.13 -4.79 7.94 71.98 0.57 -4.22 16 15 C 0.50 20.43 5.41 87.66 0.47 20.91 16 16 O -0.57 -27.07 12.92 -3.02 -0.04 -27.11 16 17 N -0.72 -22.58 4.75 -445.87 -2.12 -24.70 16 18 C 0.19 5.25 2.70 44.29 0.12 5.37 16 19 H 0.08 2.43 7.57 -2.39 -0.02 2.41 16 20 C -0.16 -2.75 5.67 30.75 0.17 -2.58 16 21 C 0.06 0.96 7.03 72.12 0.51 1.47 16 22 O -0.32 -7.24 10.27 -91.79 -0.94 -8.18 16 23 C 0.13 3.54 6.47 22.52 0.15 3.69 16 24 C -0.16 -3.89 9.94 22.42 0.22 -3.66 16 25 C -0.08 -1.96 10.04 22.22 0.22 -1.73 16 26 C -0.17 -5.48 10.04 22.25 0.22 -5.26 16 27 C -0.09 -3.42 9.07 22.30 0.20 -3.21 16 28 C -0.18 -5.80 5.56 -19.75 -0.11 -5.91 16 29 H 0.05 1.95 6.11 -2.39 -0.01 1.93 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 32 H 0.02 1.12 8.09 -2.39 -0.02 1.10 16 33 H 0.04 1.97 6.66 -2.39 -0.02 1.96 16 34 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 35 H 0.07 2.12 7.56 -2.39 -0.02 2.10 16 36 H 0.05 2.40 7.83 -2.39 -0.02 2.38 16 37 H 0.04 1.60 6.63 -2.39 -0.02 1.58 16 38 H 0.41 10.95 8.00 -92.71 -0.74 10.21 16 39 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.15 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 45 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.10 4.54 4.71 -2.91 -0.01 4.53 16 Total: -1.00 -68.19 361.67 3.20 -65.00 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.25 Total: 28.77 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.22 Total: -0.71 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.32 Total: -104.43 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.98 Total: -35.29 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.19 3.20 -65.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298250495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.146 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds