Wall clock time and date at job start Tue Mar 31 2020 12:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99929 * 2 1 4 4 C 1.53005 * 109.47013 * 125.00301 * 3 2 1 5 5 O 1.42891 * 109.46792 * 180.02562 * 4 3 2 6 6 C 1.42910 * 113.99668 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47030 * 329.99584 * 6 5 4 8 8 C 1.52993 * 109.47128 * 89.99712 * 6 5 4 9 9 C 1.50706 * 109.46870 * 209.99903 * 6 5 4 10 10 O 1.21283 * 120.00008 * 344.02977 * 9 6 5 11 11 N 1.34777 * 119.99773 * 164.03447 * 9 6 5 12 12 C 1.46497 * 119.99887 * 5.21159 * 11 9 6 13 13 C 1.50693 * 109.47458 * 95.85385 * 12 11 9 14 14 H 1.08004 * 120.00016 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00228 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99987 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99881 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46632 * 90.00255 * 17 15 13 19 19 H 1.48500 * 109.46879 * 209.99828 * 17 15 13 20 20 H 1.48496 * 109.47348 * 330.00203 * 17 15 13 21 21 C 1.46494 * 119.99848 * 185.20864 * 11 9 6 22 22 C 1.50705 * 109.46805 * 89.99955 * 21 11 9 23 23 C 1.38676 * 120.41922 * 269.71883 * 22 21 11 24 24 C 1.38628 * 118.41737 * 179.78353 * 23 22 21 25 25 C 1.38226 * 119.16544 * 0.51652 * 24 23 22 26 26 N 1.31852 * 120.76014 * 359.72221 * 25 24 23 27 27 C 1.31883 * 121.72871 * 0.02562 * 26 25 24 28 28 H 1.08002 * 119.99790 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00384 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00201 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47036 * 5.00100 * 3 2 1 32 32 H 1.09000 * 109.47010 * 244.99911 * 3 2 1 33 33 H 1.08997 * 109.46837 * 59.99514 * 4 3 2 34 34 H 1.09007 * 109.46715 * 299.99963 * 4 3 2 35 35 H 1.09002 * 109.47290 * 185.76330 * 8 6 5 36 36 H 1.09001 * 109.47197 * 305.76161 * 8 6 5 37 37 H 1.09004 * 109.47649 * 65.76477 * 8 6 5 38 38 H 1.09009 * 109.46909 * 215.85386 * 12 11 9 39 39 H 1.09003 * 109.47337 * 335.84367 * 12 11 9 40 40 H 0.97000 * 119.99730 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.47593 * 209.99828 * 21 11 9 42 42 H 1.09004 * 109.47385 * 330.00292 * 21 11 9 43 43 H 1.08001 * 120.79038 * 0.02562 * 23 22 21 44 44 H 1.08000 * 120.41225 * 180.22072 * 24 23 22 45 45 H 1.07996 * 119.62197 * 179.74875 * 25 24 23 46 46 H 1.08007 * 119.62049 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7491 2.5708 1.1819 6 6 4.6886 2.6995 2.2510 7 1 4.3367 2.1343 3.1140 8 6 6.0470 2.1554 1.8045 9 6 4.8278 4.1528 2.6251 10 8 4.4269 5.0141 1.8713 11 7 5.3979 4.4952 3.7974 12 6 5.9847 3.4630 4.6556 13 6 7.4662 3.3747 4.3940 14 1 7.9247 4.0223 3.6614 15 6 8.2362 2.4671 5.0900 16 7 9.5291 2.3897 4.8613 17 14 7.4433 1.3474 6.3576 18 1 7.0002 0.0916 5.7005 19 1 8.4288 1.0283 7.4216 20 1 6.2706 2.0322 6.9584 21 6 5.4308 5.8994 4.2133 22 6 4.1925 6.2159 5.0118 23 6 3.0488 6.6799 4.3795 24 6 1.9319 6.9537 5.1537 25 6 1.9982 6.7668 6.5216 26 7 3.1046 6.3287 7.0896 27 6 4.1843 6.0534 6.3841 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7399 0.5065 1.0920 34 1 2.4772 1.2355 2.1130 35 1 6.7354 2.1587 2.6496 36 1 5.9273 1.1361 1.4374 37 1 6.4463 2.7838 1.0082 38 1 5.8151 3.7203 5.7012 39 1 5.5193 2.5017 4.4380 40 1 10.0709 1.7514 5.3512 41 1 6.3140 6.0760 4.8273 42 1 5.4677 6.5389 3.3313 43 1 3.0276 6.8208 3.3089 44 1 1.0230 7.3131 4.6942 45 1 1.1338 6.9817 7.1323 46 1 5.0725 5.6967 6.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299515708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:04 Heat of formation + Delta-G solvation = -26.754495 kcal Electronic energy + Delta-G solvation = -27084.684909 eV Core-core repulsion = 23361.179116 eV Total energy + Delta-G solvation = -3723.505793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.21576 -39.38457 -37.62360 -35.42149 -35.08547 -33.21369 -32.29427 -31.68945 -30.75153 -28.90930 -28.18884 -26.34687 -23.81756 -23.44258 -22.81162 -22.53359 -21.62217 -20.00471 -18.60155 -17.34997 -16.87851 -16.81515 -16.43115 -15.93377 -15.85443 -15.37420 -15.27119 -14.75740 -14.46016 -14.05265 -13.94087 -13.51137 -13.45426 -13.06778 -12.96997 -12.82729 -12.58076 -12.53074 -12.07343 -11.88792 -11.65483 -11.53530 -11.34932 -11.27025 -11.19062 -10.99627 -10.79187 -10.70477 -10.37584 -9.76901 -9.68539 -9.53816 -9.51624 -9.32964 -9.10142 -8.84078 -8.71300 -7.92514 -6.32180 -4.33954 1.20835 1.43715 2.06008 3.09652 3.17117 3.18704 3.21119 3.32766 3.94312 4.17095 4.27163 4.58158 4.83193 4.94043 4.95618 4.98259 5.05754 5.07946 5.14342 5.18359 5.21676 5.27694 5.40029 5.44876 5.57276 5.62540 5.69765 5.81060 5.88285 5.94145 5.97152 6.13561 6.23344 6.27453 6.28258 6.36389 6.43783 6.50208 6.53882 6.57696 6.84665 6.98572 7.10533 7.32153 7.40208 7.95474 8.09618 8.28934 8.71469 8.79793 9.25877 10.79482 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007358 B = 0.005422 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.242594 B = 5163.364232 C = 7633.974727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C -0.092 4.092 4 C 0.064 3.936 5 O -0.364 6.364 6 C 0.079 3.921 7 H 0.077 0.923 8 C -0.183 4.183 9 C 0.525 3.475 10 O -0.547 6.547 11 N -0.585 5.585 12 C 0.204 3.796 13 C -0.542 4.542 14 H 0.083 0.917 15 C 0.081 3.919 16 N -0.884 5.884 17 Si 0.863 3.137 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.162 3.838 22 C -0.146 4.146 23 C -0.056 4.056 24 C -0.180 4.180 25 C 0.090 3.910 26 N -0.490 5.490 27 C 0.112 3.888 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.150 0.850 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 0.028 -2.584 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.168 4.168 3 C -0.129 4.129 4 C -0.013 4.013 5 O -0.283 6.283 6 C 0.019 3.981 7 H 0.095 0.905 8 C -0.240 4.240 9 C 0.312 3.688 10 O -0.425 6.425 11 N -0.316 5.316 12 C 0.083 3.917 13 C -0.580 4.580 14 H 0.101 0.899 15 C -0.124 4.124 16 N -0.520 5.520 17 Si 0.689 3.311 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.038 3.962 22 C -0.149 4.149 23 C -0.083 4.083 24 C -0.199 4.199 25 C -0.067 4.067 26 N -0.198 5.198 27 C -0.045 4.045 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.168 0.832 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.400 0.400 -2.153 14.565 hybrid contribution -0.243 -0.968 0.033 0.999 sum -14.643 -0.568 -2.120 14.806 Atomic orbital electron populations 1.23874 0.95896 1.01902 1.01305 1.22853 0.96012 0.98177 0.99725 1.20639 0.97942 0.95611 0.98741 1.22460 0.93792 0.87069 0.97969 1.87961 1.54628 1.36725 1.48987 1.21900 0.91585 0.94342 0.90316 0.90483 1.22511 0.96081 1.00020 1.05375 1.20192 0.77331 0.90307 0.80959 1.90595 1.50121 1.51368 1.50395 1.47826 1.56497 1.07533 1.19749 1.19943 0.94910 0.86323 0.90505 1.21301 0.90169 1.22075 1.24419 0.89873 1.24849 0.94630 0.96666 0.96244 1.69879 1.05042 1.35895 1.41219 0.87040 0.80009 0.81793 0.82210 1.19771 1.20658 1.18679 1.20148 0.94038 0.83402 0.98613 1.21462 0.97805 0.99978 0.95705 1.21689 0.91867 0.93831 1.00885 1.22118 0.99506 1.02887 0.95431 1.22702 0.95917 0.95452 0.92650 1.67700 0.99900 1.11441 1.40792 1.22808 0.96381 0.94580 0.90744 0.88435 0.88476 0.87181 0.90668 0.89984 0.93064 0.93531 0.86292 0.92690 0.92047 0.94802 0.95187 0.92173 0.88473 0.89356 0.84426 0.85169 0.83232 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 14.32 29.02 0.42 -1.30 16 2 C -0.15 -1.46 9.52 -36.02 -0.34 -1.81 16 3 C -0.09 -1.07 6.03 -27.88 -0.17 -1.24 16 4 C 0.06 0.88 5.73 37.16 0.21 1.09 16 5 O -0.36 -6.47 9.57 -54.61 -0.52 -6.99 16 6 C 0.08 1.45 2.29 -27.88 -0.06 1.39 16 7 H 0.08 1.32 6.38 -51.93 -0.33 0.99 16 8 C -0.18 -3.37 9.29 37.15 0.35 -3.02 16 9 C 0.52 10.63 6.98 -10.98 -0.08 10.56 16 10 O -0.55 -12.11 16.04 -13.83 -0.22 -12.33 16 11 N -0.58 -11.36 2.44 -176.43 -0.43 -11.79 16 12 C 0.20 4.21 3.75 -5.20 -0.02 4.19 16 13 C -0.54 -13.09 7.65 -34.44 -0.26 -13.35 16 14 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 15 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.88 -24.21 13.96 55.43 0.77 -23.44 16 17 Si 0.86 18.75 27.47 -169.99 -4.67 14.08 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 21 C 0.16 2.78 5.62 -5.19 -0.03 2.75 16 22 C -0.15 -2.32 5.48 -104.48 -0.57 -2.89 16 23 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 24 C -0.18 -2.28 10.11 -39.44 -0.40 -2.68 16 25 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 26 N -0.49 -7.63 10.36 -13.25 -0.14 -7.77 16 27 C 0.11 1.76 10.86 -17.55 -0.19 1.57 16 28 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.10 0.83 7.84 -52.48 -0.41 0.42 16 30 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.65 7.77 -51.93 -0.40 0.24 16 34 H 0.05 0.61 8.09 -51.92 -0.42 0.19 16 35 H 0.12 2.48 4.68 -51.93 -0.24 2.24 16 36 H 0.05 0.88 7.77 -51.93 -0.40 0.48 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.03 0.69 7.17 -51.92 -0.37 0.32 16 39 H 0.03 0.61 4.96 -51.93 -0.26 0.35 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 41 H 0.10 1.62 8.02 -51.93 -0.42 1.20 16 42 H 0.09 1.53 7.31 -51.93 -0.38 1.15 16 43 H 0.14 2.08 7.97 -52.49 -0.42 1.66 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 46 H 0.16 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -29.39 383.43 -8.27 -37.67 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.01 Total: 7.83 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.83 Total: -3.04 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.21 Total: -42.99 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.74 Total: -19.32 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.67 Total: 14.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.39 -8.27 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299515708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.912 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds