Wall clock time and date at job start Tue Mar 31 2020 12:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47459 * 2 1 4 4 C 1.50698 * 109.47026 * 239.99865 * 2 1 3 5 5 O 1.21282 * 120.00141 * 261.75170 * 4 2 1 6 6 N 1.34779 * 120.00046 * 81.76144 * 4 2 1 7 7 C 1.46501 * 119.99730 * 355.77966 * 6 4 2 8 8 C 1.46495 * 120.00212 * 175.79000 * 6 4 2 9 9 C 1.50693 * 109.47568 * 89.99415 * 8 6 4 10 10 H 1.07998 * 119.99889 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00330 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99727 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00099 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47292 * 90.00016 * 13 11 9 15 15 H 1.48505 * 109.46964 * 210.00083 * 13 11 9 16 16 H 1.48495 * 109.47362 * 329.99350 * 13 11 9 17 17 N 1.46900 * 109.47126 * 120.00231 * 2 1 3 18 18 C 1.47170 * 110.99928 * 177.85808 * 17 2 1 19 19 C 1.52882 * 108.51093 * 52.09631 * 18 17 2 20 20 C 1.50732 * 109.97695 * 50.34979 * 19 18 17 21 21 C 1.38727 * 118.43154 * 163.26450 * 20 19 18 22 22 C 1.37926 * 120.43183 * 179.81329 * 21 20 19 23 23 C 1.38761 * 119.77464 * 0.02562 * 22 21 20 24 24 O 1.35901 * 120.12933 * 180.08775 * 23 22 21 25 25 C 1.38508 * 119.74311 * 0.05867 * 23 22 21 26 26 C 1.37878 * 121.63874 * 343.22309 * 20 19 18 27 27 C 1.46633 * 111.00002 * 300.81440 * 17 2 1 28 28 H 1.09000 * 109.46890 * 305.11694 * 1 2 3 29 29 H 1.08994 * 109.47086 * 65.11630 * 1 2 3 30 30 H 1.08995 * 109.46990 * 185.11946 * 1 2 3 31 31 H 1.09008 * 109.46769 * 89.03219 * 7 6 4 32 32 H 1.09002 * 109.47106 * 209.03089 * 7 6 4 33 33 H 1.09000 * 109.47495 * 329.03442 * 7 6 4 34 34 H 1.09007 * 109.47003 * 209.99893 * 8 6 4 35 35 H 1.08998 * 109.47063 * 329.98992 * 8 6 4 36 36 H 0.97000 * 120.00030 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.62489 * 171.80259 * 18 17 2 38 38 H 1.08998 * 109.62919 * 292.19019 * 18 17 2 39 39 H 1.09005 * 109.38839 * 170.50547 * 19 18 17 40 40 H 1.08997 * 109.38349 * 290.29792 * 19 18 17 41 41 H 1.07998 * 119.78373 * 359.81576 * 21 20 19 42 42 H 1.08008 * 120.11403 * 180.02562 * 22 21 20 43 43 H 0.96699 * 113.99458 * 269.97454 * 24 23 22 44 44 H 1.07992 * 119.82939 * 179.97438 * 25 23 22 45 45 H 1.09007 * 109.29767 * 49.47662 * 27 17 2 46 46 H 1.09007 * 109.30327 * 168.85164 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3765 -1.8714 -1.1623 6 7 2.0992 -0.0556 -2.4066 7 6 1.5977 1.3170 -2.5102 8 6 2.6732 -0.7164 -3.5813 9 6 1.5852 -1.4388 -4.3331 10 1 0.5677 -1.4083 -3.9722 11 6 1.8885 -2.1386 -5.4817 12 7 3.1274 -2.1753 -5.9214 13 14 0.5396 -3.0334 -6.4140 14 1 -0.0534 -2.1205 -7.4240 15 1 1.1136 -4.2209 -7.0965 16 1 -0.5135 -3.4703 -5.4627 17 7 2.0197 -0.6925 1.1994 18 6 3.4899 -0.7568 1.2080 19 6 4.0387 0.6539 0.9932 20 6 3.3807 1.6138 1.9511 21 6 3.9766 2.8487 2.1623 22 6 3.4077 3.7601 3.0271 23 6 2.2319 3.4395 3.6906 24 8 1.6642 4.3328 4.5429 25 6 1.6388 2.2056 3.4803 26 6 2.2137 1.2913 2.6107 27 6 1.5337 -0.0390 2.4188 28 1 -0.3633 0.5912 0.8406 29 1 -0.3633 0.4324 -0.9322 30 1 -0.3633 -1.0235 0.0917 31 1 2.3983 2.0156 -2.2666 32 1 1.2515 1.5015 -3.5272 33 1 0.7705 1.4552 -1.8140 34 1 3.1300 0.0301 -4.2311 35 1 3.4307 -1.4321 -3.2617 36 1 3.3410 -2.6679 -6.7292 37 1 3.8340 -1.1413 2.1682 38 1 3.8325 -1.4121 0.4071 39 1 5.1153 0.6533 1.1640 40 1 3.8348 0.9694 -0.0300 41 1 4.8919 3.0979 1.6461 42 1 3.8757 4.7202 3.1874 43 1 1.9687 4.2522 5.4572 44 1 0.7239 1.9544 3.9962 45 1 0.4573 0.1146 2.3407 46 1 1.7420 -0.6775 3.2773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332684798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:27 Heat of formation + Delta-G solvation = -35.071188 kcal Electronic energy + Delta-G solvation = -27728.046498 eV Core-core repulsion = 24004.180066 eV Total energy + Delta-G solvation = -3723.866432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98850 -39.37001 -37.98577 -36.08202 -34.73859 -32.97559 -32.66798 -31.90044 -29.89353 -28.76554 -27.63676 -26.00069 -25.16002 -23.61423 -23.31552 -22.51872 -21.94930 -19.87994 -18.41585 -17.79946 -16.85955 -16.52337 -16.32759 -15.86671 -15.64215 -15.49541 -15.10910 -14.81047 -14.30461 -14.02066 -13.80757 -13.76877 -13.61062 -13.11187 -12.84681 -12.64048 -12.40096 -12.23015 -12.12731 -11.99069 -11.90820 -11.62113 -11.56404 -11.30559 -11.14284 -11.05759 -10.86854 -10.79036 -10.59168 -10.54469 -10.12803 -9.59169 -9.01156 -8.79730 -8.58230 -8.41701 -8.18941 -7.60224 -6.02397 -4.06635 0.99651 1.08948 3.31673 3.33269 3.38190 3.41164 3.45727 3.68449 3.94456 4.18380 4.46789 4.57856 4.60795 4.74231 4.90381 4.99918 5.03323 5.12145 5.28082 5.31012 5.34772 5.36739 5.42453 5.48467 5.59264 5.69091 5.71260 5.77056 5.80805 5.85309 5.91300 6.00479 6.05327 6.17197 6.18525 6.25185 6.37180 6.42613 6.60692 6.94399 7.06942 7.16492 7.38145 7.44132 7.57397 7.94427 8.25677 8.44662 8.93337 9.15071 9.58503 11.05690 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.003177 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.774835 B = 8811.024258 C = 8886.916984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.063 0.937 4 C 0.510 3.490 5 O -0.521 6.521 6 N -0.603 5.603 7 C 0.078 3.922 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.500 5.500 18 C 0.047 3.953 19 C -0.122 4.122 20 C -0.080 4.080 21 C -0.101 4.101 22 C -0.146 4.146 23 C 0.097 3.903 24 O -0.500 6.500 25 C -0.139 4.139 26 C -0.095 4.095 27 C 0.085 3.915 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.388 0.612 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 12.326 20.327 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 H 0.081 0.919 4 C 0.296 3.704 5 O -0.396 6.396 6 N -0.337 5.337 7 C -0.066 4.066 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.221 5.221 18 C -0.081 4.081 19 C -0.161 4.161 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.165 4.165 23 C 0.053 3.947 24 O -0.310 6.310 25 C -0.158 4.158 26 C -0.097 4.097 27 C -0.043 4.043 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.243 0.757 44 H 0.146 0.854 45 H 0.111 0.889 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.572 11.294 19.653 22.674 hybrid contribution -0.138 0.546 -0.165 0.587 sum -0.710 11.840 19.488 22.814 Atomic orbital electron populations 1.21861 0.92645 1.03550 1.02127 1.21732 0.96988 0.96427 0.90163 0.91947 1.20028 0.79421 0.87124 0.83872 1.90658 1.48058 1.15930 1.84981 1.48158 1.60507 1.13882 1.11108 1.21738 0.98027 0.83703 1.03106 1.19258 0.94337 0.92782 0.80750 1.21431 0.94823 1.31597 1.08360 0.92466 1.24933 0.95631 0.96280 0.97301 1.69930 1.17757 1.42474 1.23384 0.86503 0.81932 0.79309 0.79735 1.20701 1.21108 1.19848 1.62413 1.09740 1.49829 1.00160 1.22378 0.86669 0.95060 1.03962 1.21192 1.00633 0.95821 0.98414 1.19692 0.94956 0.95400 0.97952 1.21015 1.00024 0.92936 0.97940 1.21341 0.95542 1.00199 0.99372 1.18379 0.92597 0.88833 0.94868 1.84839 1.68016 1.56173 1.21975 1.21315 1.01070 0.92727 1.00659 1.20387 0.95231 0.97599 0.96441 1.21323 0.99680 0.89524 0.93778 0.92058 0.91201 0.90827 0.94080 0.90618 0.92259 0.95117 0.94013 0.92763 0.90511 0.87929 0.89931 0.90090 0.85616 0.85580 0.75709 0.85433 0.88900 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.47 37.16 0.31 -1.69 16 2 C 0.06 0.91 0.93 -68.87 -0.06 0.85 16 3 H 0.06 0.92 4.77 -51.93 -0.25 0.68 16 4 C 0.51 10.56 5.76 -10.99 -0.06 10.50 16 5 O -0.52 -13.02 14.55 5.56 0.08 -12.94 16 6 N -0.60 -12.78 2.86 -182.96 -0.52 -13.31 16 7 C 0.08 1.28 9.80 59.85 0.59 1.86 16 8 C 0.25 6.47 5.12 -5.20 -0.03 6.45 16 9 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 N -0.50 -7.30 4.61 -229.58 -1.06 -8.36 16 18 C 0.05 0.67 5.47 -3.74 -0.02 0.65 16 19 C -0.12 -1.52 5.15 -27.93 -0.14 -1.67 16 20 C -0.08 -0.92 5.05 -104.56 -0.53 -1.45 16 21 C -0.10 -1.05 9.65 -39.52 -0.38 -1.43 16 22 C -0.15 -1.44 9.99 -39.50 -0.39 -1.83 16 23 C 0.10 0.98 6.70 -39.29 -0.26 0.72 16 24 O -0.50 -4.39 13.51 -19.43 -0.26 -4.65 16 25 C -0.14 -1.41 9.59 -39.33 -0.38 -1.78 16 26 C -0.09 -1.06 5.29 -104.63 -0.55 -1.61 16 27 C 0.09 0.96 5.35 -5.16 -0.03 0.93 16 28 H 0.06 0.69 6.45 -51.93 -0.33 0.35 16 29 H 0.07 0.97 6.27 -51.93 -0.33 0.64 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 33 H 0.06 0.83 4.86 -51.93 -0.25 0.58 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.10 1.78 6.25 -51.93 -0.32 1.46 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.14 6.59 -51.93 -0.34 0.80 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.39 1.48 9.06 45.56 0.41 1.89 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.09 0.96 5.86 -51.93 -0.30 0.65 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -34.47 361.47 -8.83 -43.31 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.87 Total: 2.57 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.36 Total: -3.11 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.85 Total: -47.65 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.18 Total: -17.59 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.47 -8.83 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332684798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.234 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds