Wall clock time and date at job start Tue Mar 31 2020 12:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47459 * 2 1 4 4 C 1.50698 * 109.47026 * 239.99865 * 2 1 3 5 5 O 1.21282 * 120.00141 * 261.75170 * 4 2 1 6 6 N 1.34779 * 120.00046 * 81.76144 * 4 2 1 7 7 C 1.46501 * 119.99730 * 355.77966 * 6 4 2 8 8 C 1.46495 * 120.00212 * 175.79000 * 6 4 2 9 9 C 1.50693 * 109.47568 * 89.99415 * 8 6 4 10 10 H 1.07998 * 119.99889 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00330 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99727 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00099 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47292 * 90.00016 * 13 11 9 15 15 H 1.48505 * 109.46964 * 210.00083 * 13 11 9 16 16 H 1.48495 * 109.47362 * 329.99350 * 13 11 9 17 17 N 1.46900 * 109.47126 * 120.00231 * 2 1 3 18 18 C 1.47170 * 110.99928 * 177.85808 * 17 2 1 19 19 C 1.52882 * 108.51093 * 52.09631 * 18 17 2 20 20 C 1.50732 * 109.97695 * 50.34979 * 19 18 17 21 21 C 1.38727 * 118.43154 * 163.26450 * 20 19 18 22 22 C 1.37926 * 120.43183 * 179.81329 * 21 20 19 23 23 C 1.38761 * 119.77464 * 0.02562 * 22 21 20 24 24 O 1.35901 * 120.12933 * 180.08775 * 23 22 21 25 25 C 1.38508 * 119.74311 * 0.05867 * 23 22 21 26 26 C 1.37878 * 121.63874 * 343.22309 * 20 19 18 27 27 C 1.46633 * 111.00002 * 300.81440 * 17 2 1 28 28 H 1.09000 * 109.46890 * 305.11694 * 1 2 3 29 29 H 1.08994 * 109.47086 * 65.11630 * 1 2 3 30 30 H 1.08995 * 109.46990 * 185.11946 * 1 2 3 31 31 H 1.09008 * 109.46769 * 89.03219 * 7 6 4 32 32 H 1.09002 * 109.47106 * 209.03089 * 7 6 4 33 33 H 1.09000 * 109.47495 * 329.03442 * 7 6 4 34 34 H 1.09007 * 109.47003 * 209.99893 * 8 6 4 35 35 H 1.08998 * 109.47063 * 329.98992 * 8 6 4 36 36 H 0.97000 * 120.00030 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.62489 * 171.80259 * 18 17 2 38 38 H 1.08998 * 109.62919 * 292.19019 * 18 17 2 39 39 H 1.09005 * 109.38839 * 170.50547 * 19 18 17 40 40 H 1.08997 * 109.38349 * 290.29792 * 19 18 17 41 41 H 1.07998 * 119.78373 * 359.81576 * 21 20 19 42 42 H 1.08008 * 120.11403 * 180.02562 * 22 21 20 43 43 H 0.96699 * 113.99458 * 269.97454 * 24 23 22 44 44 H 1.07992 * 119.82939 * 179.97438 * 25 23 22 45 45 H 1.09007 * 109.29767 * 49.47662 * 27 17 2 46 46 H 1.09007 * 109.30327 * 168.85164 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3765 -1.8714 -1.1623 6 7 2.0992 -0.0556 -2.4066 7 6 1.5977 1.3170 -2.5102 8 6 2.6732 -0.7164 -3.5813 9 6 1.5852 -1.4388 -4.3331 10 1 0.5677 -1.4083 -3.9722 11 6 1.8885 -2.1386 -5.4817 12 7 3.1274 -2.1753 -5.9214 13 14 0.5396 -3.0334 -6.4140 14 1 -0.0534 -2.1205 -7.4240 15 1 1.1136 -4.2209 -7.0965 16 1 -0.5135 -3.4703 -5.4627 17 7 2.0197 -0.6925 1.1994 18 6 3.4899 -0.7568 1.2080 19 6 4.0387 0.6539 0.9932 20 6 3.3807 1.6138 1.9511 21 6 3.9766 2.8487 2.1623 22 6 3.4077 3.7601 3.0271 23 6 2.2319 3.4395 3.6906 24 8 1.6642 4.3328 4.5429 25 6 1.6388 2.2056 3.4803 26 6 2.2137 1.2913 2.6107 27 6 1.5337 -0.0390 2.4188 28 1 -0.3633 0.5912 0.8406 29 1 -0.3633 0.4324 -0.9322 30 1 -0.3633 -1.0235 0.0917 31 1 2.3983 2.0156 -2.2666 32 1 1.2515 1.5015 -3.5272 33 1 0.7705 1.4552 -1.8140 34 1 3.1300 0.0301 -4.2311 35 1 3.4307 -1.4321 -3.2617 36 1 3.3410 -2.6679 -6.7292 37 1 3.8340 -1.1413 2.1682 38 1 3.8325 -1.4121 0.4071 39 1 5.1153 0.6533 1.1640 40 1 3.8348 0.9694 -0.0300 41 1 4.8919 3.0979 1.6461 42 1 3.8757 4.7202 3.1874 43 1 1.9687 4.2522 5.4572 44 1 0.7239 1.9544 3.9962 45 1 0.4573 0.1146 2.3407 46 1 1.7420 -0.6775 3.2773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332684798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:26 Heat of formation + Delta-G solvation = -60.285058 kcal Electronic energy + Delta-G solvation = -27729.139853 eV Core-core repulsion = 24004.180066 eV Total energy + Delta-G solvation = -3724.959787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.02379 -40.56962 -39.05982 -37.02827 -36.49296 -34.80009 -33.83344 -33.02819 -30.92620 -29.85799 -29.30935 -27.49435 -26.34289 -25.25057 -24.34022 -23.45226 -23.14518 -21.02061 -19.62800 -18.76717 -18.67153 -18.17407 -17.46788 -17.03897 -16.76375 -16.57948 -16.41234 -15.96723 -15.83382 -15.37811 -15.03934 -14.83734 -14.47431 -14.34283 -14.12977 -13.98555 -13.66530 -13.54073 -13.52290 -13.25299 -13.03579 -12.99638 -12.97184 -12.67259 -12.55963 -12.47778 -12.31685 -12.20547 -12.10812 -11.75673 -11.61765 -11.49000 -10.64030 -10.42178 -9.76088 -9.43716 -9.37852 -9.27111 -8.22169 -6.36632 0.23353 0.34199 1.36006 1.39232 1.49632 1.83270 2.22372 2.41443 2.59808 2.94607 3.07210 3.28456 3.61534 3.70355 3.83312 3.93740 3.98272 4.07006 4.10943 4.16045 4.32683 4.34362 4.44275 4.56704 4.61399 4.63061 4.68445 4.73633 4.83985 4.84119 4.92070 4.97098 5.01492 5.02426 5.08591 5.20944 5.24070 5.32430 5.44548 5.56345 5.60650 5.81884 5.87671 5.91864 6.06672 6.09703 6.70707 6.79682 6.88713 7.29295 7.51930 8.84803 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.003177 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.774835 B = 8811.024258 C = 8886.916984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.077 0.923 4 C 0.504 3.496 5 O -0.575 6.575 6 N -0.611 5.611 7 C 0.074 3.926 8 C 0.264 3.736 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.273 1.273 17 N -0.519 5.519 18 C 0.049 3.951 19 C -0.113 4.113 20 C -0.096 4.096 21 C -0.104 4.104 22 C -0.150 4.150 23 C 0.100 3.900 24 O -0.509 6.509 25 C -0.140 4.140 26 C -0.099 4.099 27 C 0.088 3.912 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.022 0.978 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.410 0.590 44 H 0.145 0.855 45 H 0.108 0.892 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 14.301 22.081 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.094 0.906 4 C 0.292 3.708 5 O -0.454 6.454 6 N -0.343 5.343 7 C -0.068 4.068 8 C 0.142 3.858 9 C -0.579 4.579 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.198 1.198 17 N -0.241 5.241 18 C -0.078 4.078 19 C -0.151 4.151 20 C -0.096 4.096 21 C -0.122 4.122 22 C -0.168 4.168 23 C 0.055 3.945 24 O -0.322 6.322 25 C -0.159 4.159 26 C -0.100 4.100 27 C -0.039 4.039 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.154 0.846 42 H 0.160 0.840 43 H 0.269 0.731 44 H 0.163 0.837 45 H 0.126 0.874 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.415 13.323 21.442 25.359 hybrid contribution 0.488 -0.021 -0.613 0.783 sum -1.927 13.302 20.830 24.790 Atomic orbital electron populations 1.21894 0.90913 1.03354 1.03779 1.21568 0.97995 0.96015 0.87993 0.90568 1.21016 0.78084 0.86711 0.85001 1.90623 1.50250 1.18596 1.85909 1.48159 1.60418 1.15659 1.10049 1.21989 0.99753 0.81222 1.03816 1.18710 0.93107 0.91792 0.82146 1.21688 0.94933 1.32315 1.08952 0.93017 1.25851 0.98091 0.96955 0.98257 1.70048 1.19728 1.43164 1.23934 0.85425 0.78756 0.78248 0.78454 1.18758 1.20610 1.19831 1.62362 1.09857 1.50874 1.00983 1.22232 0.86995 0.95512 1.03110 1.21029 1.01452 0.94961 0.97690 1.19625 0.95691 0.95727 0.98604 1.21149 1.00420 0.92569 0.98037 1.21551 0.95638 1.00718 0.98933 1.18486 0.92339 0.88825 0.94824 1.84782 1.68155 1.55808 1.23477 1.21448 1.01611 0.92496 1.00352 1.20345 0.95150 0.97626 0.96928 1.21406 1.00338 0.89831 0.92368 0.88425 0.91081 0.92374 0.91697 0.91066 0.89351 0.95960 0.98520 0.92417 0.88884 0.92192 0.88890 0.92258 0.84586 0.84011 0.73119 0.83706 0.87441 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.47 71.98 0.61 -3.05 16 2 C 0.08 2.32 0.93 44.17 0.04 2.36 16 3 H 0.08 2.13 4.77 -2.39 -0.01 2.12 16 4 C 0.50 21.60 5.76 87.66 0.50 22.10 16 5 O -0.57 -30.55 14.55 -3.04 -0.04 -30.59 16 6 N -0.61 -26.66 2.86 -851.13 -2.43 -29.09 16 7 C 0.07 2.37 9.80 127.77 1.25 3.62 16 8 C 0.26 14.51 5.12 85.63 0.44 14.95 16 9 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.43 5.46 84.65 0.46 0.89 16 12 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 13 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 17 N -0.52 -14.88 4.61 -880.27 -4.06 -18.94 16 18 C 0.05 1.44 5.47 86.21 0.47 1.91 16 19 C -0.11 -2.81 5.15 29.82 0.15 -2.65 16 20 C -0.10 -2.06 5.05 -19.82 -0.10 -2.16 16 21 C -0.10 -1.93 9.65 22.31 0.22 -1.71 16 22 C -0.15 -2.51 9.99 22.32 0.22 -2.29 16 23 C 0.10 1.67 6.70 22.46 0.15 1.82 16 24 O -0.51 -7.11 13.51 -92.43 -1.25 -8.36 16 25 C -0.14 -2.35 9.59 22.43 0.22 -2.14 16 26 C -0.10 -1.94 5.29 -19.87 -0.11 -2.04 16 27 C 0.09 1.77 5.35 85.59 0.46 2.23 16 28 H 0.10 1.82 6.45 -2.39 -0.02 1.80 16 29 H 0.07 1.81 6.27 -2.39 -0.01 1.79 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.07 2.33 8.06 -2.39 -0.02 2.31 16 33 H 0.09 2.28 4.86 -2.39 -0.01 2.27 16 34 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 35 H 0.00 -0.21 7.48 -2.39 -0.02 -0.23 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.09 2.31 8.05 -2.38 -0.02 2.29 16 38 H 0.06 2.26 6.25 -2.39 -0.01 2.24 16 39 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.06 1.71 6.59 -2.39 -0.02 1.69 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.41 1.65 9.06 -74.06 -0.67 0.98 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.11 1.83 5.86 -2.38 -0.01 1.82 16 46 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -78.01 361.47 0.09 -77.91 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.33 Total: 15.69 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.23 Total: 2.30 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -6.21 Total: -104.64 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.29 Total: -38.96 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.01 0.09 -77.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332684798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.629 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds