Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47322 * 2 1 4 4 C 1.46500 * 119.99957 * 270.27828 * 3 2 1 5 5 C 1.53004 * 109.46797 * 280.38030 * 4 3 2 6 6 C 1.34778 * 119.99829 * 89.99425 * 3 2 1 7 7 O 1.21531 * 120.00180 * 357.07831 * 6 3 2 8 8 C 1.48038 * 119.99898 * 177.07150 * 6 3 2 9 9 C 1.39556 * 120.00162 * 322.30442 * 8 6 3 10 10 C 1.37814 * 119.99780 * 179.78316 * 9 8 6 11 11 C 1.39552 * 120.00304 * 0.46892 * 10 9 8 12 12 C 1.48040 * 120.00105 * 179.76268 * 11 10 9 13 13 O 1.21528 * 119.99579 * 180.02562 * 12 11 10 14 14 N 1.34769 * 119.99733 * 0.02562 * 12 11 10 15 15 C 1.46506 * 119.99783 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46987 * 179.97438 * 15 14 12 17 17 C 1.50709 * 109.46757 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00232 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99923 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47025 * 59.99647 * 21 19 17 23 23 H 1.48502 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46788 * 299.99497 * 21 19 17 25 25 C 1.39561 * 119.99876 * 359.78582 * 11 10 9 26 26 C 1.37820 * 119.99700 * 359.97438 * 25 11 10 27 27 H 1.08994 * 109.46820 * 299.99783 * 1 2 3 28 28 H 1.08996 * 109.46916 * 60.00049 * 1 2 3 29 29 H 1.09001 * 109.46675 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47550 * 240.00079 * 2 1 3 31 31 H 1.09005 * 109.47467 * 119.99830 * 2 1 3 32 32 H 1.08997 * 109.47220 * 40.38028 * 4 3 2 33 33 H 1.09004 * 109.46868 * 160.37987 * 4 3 2 34 34 H 1.08999 * 109.47064 * 320.39524 * 5 4 3 35 35 H 1.08998 * 109.46929 * 80.39555 * 5 4 3 36 36 H 1.08999 * 109.46890 * 200.39349 * 5 4 3 37 37 H 1.07998 * 119.99816 * 0.02562 * 9 8 6 38 38 H 1.08011 * 119.99794 * 180.20894 * 10 9 8 39 39 H 0.96998 * 120.00835 * 0.02562 * 14 12 11 40 40 H 1.08997 * 109.47371 * 300.00657 * 15 14 12 41 41 H 1.09009 * 109.46642 * 60.00277 * 15 14 12 42 42 H 1.08995 * 109.47623 * 299.99830 * 16 15 14 43 43 H 1.08991 * 109.47178 * 60.00686 * 16 15 14 44 44 H 0.96997 * 120.00051 * 180.02562 * 20 19 17 45 45 H 1.07998 * 119.99896 * 179.97438 * 25 11 10 46 46 H 1.08002 * 119.99950 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2568 2.0739 -1.2687 5 6 3.6019 1.6299 -1.8472 6 6 2.2429 2.0166 1.1672 7 8 1.9901 1.4627 2.2190 8 6 2.7977 3.3891 1.1681 9 6 3.7670 3.7505 0.2315 10 6 4.2802 5.0295 0.2295 11 6 3.8377 5.9604 1.1703 12 6 4.3928 7.3328 1.1714 13 8 4.0077 8.1433 1.9910 14 7 5.3251 7.6833 0.2636 15 6 5.8741 9.0416 0.2644 16 6 6.9059 9.1753 -0.8574 17 6 7.4710 10.5724 -0.8562 18 1 7.1282 11.2930 -0.1284 19 6 8.4249 10.9310 -1.7848 20 7 8.8420 10.0537 -2.6714 21 14 9.1259 12.6625 -1.7828 22 1 9.7785 12.9308 -0.4762 23 1 10.1273 12.7923 -2.8717 24 1 8.0296 13.6406 -1.9988 25 6 2.8721 5.5974 2.1103 26 6 2.3554 4.3198 2.1091 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4604 1.8291 -1.9715 33 1 2.2722 3.1503 -1.0977 34 1 4.3295 1.5325 -1.0415 35 1 3.4828 0.6688 -2.3474 36 1 3.9515 2.3722 -2.5648 37 1 4.1122 3.0290 -0.4943 38 1 5.0280 5.3102 -0.4976 39 1 5.6322 7.0366 -0.3908 40 1 5.0690 9.7590 0.1055 41 1 6.3529 9.2394 1.2235 42 1 7.7110 8.4580 -0.6980 43 1 6.4275 8.9774 -1.8165 44 1 9.5134 10.3059 -3.3245 45 1 2.5300 6.3177 2.8386 46 1 1.6085 4.0387 2.8369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342640097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -46.084651 kcal Electronic energy + Delta-G solvation = -25764.763317 eV Core-core repulsion = 22040.419305 eV Total energy + Delta-G solvation = -3724.344011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95669 -39.69820 -37.93561 -36.70947 -35.00940 -33.15834 -32.94397 -31.62712 -30.90555 -30.07262 -29.37356 -25.70775 -24.52239 -24.05178 -23.05837 -22.71185 -21.11909 -20.49169 -19.61354 -18.05142 -17.51163 -17.01900 -16.44485 -15.75912 -15.56969 -15.47147 -15.01075 -14.83176 -14.55490 -14.49183 -14.28992 -14.01990 -13.56381 -13.38971 -13.26622 -13.15397 -12.96450 -12.63594 -12.59977 -12.35664 -12.31370 -12.07873 -11.61574 -11.40553 -11.27917 -11.16731 -11.05623 -10.69548 -10.38857 -10.24048 -9.93377 -9.55748 -9.30022 -9.29048 -9.18014 -9.10524 -8.60503 -8.40820 -6.13122 -4.16098 0.36515 1.09828 2.29834 2.53203 3.03455 3.29040 3.32886 3.35283 3.51141 3.76721 4.03360 4.35291 4.38621 4.56219 4.61425 4.65578 4.68745 4.87083 4.90952 4.92027 5.01575 5.07871 5.18187 5.20515 5.24045 5.33092 5.41043 5.43391 5.52181 5.64639 5.75184 5.80523 5.94166 5.99940 6.10845 6.16360 6.28243 6.30787 6.53300 6.66714 6.79536 6.93770 7.45557 7.55583 7.78057 7.84285 7.88505 8.22435 8.49962 8.89382 9.48918 10.98397 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.002240 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.320204 B =12496.108774 C =13492.033641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.608 5.608 4 C 0.091 3.909 5 C -0.182 4.182 6 C 0.561 3.439 7 O -0.532 6.532 8 C -0.117 4.117 9 C -0.114 4.114 10 C -0.095 4.095 11 C -0.101 4.101 12 C 0.544 3.456 13 O -0.542 6.542 14 N -0.713 5.713 15 C 0.120 3.880 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.069 4.069 26 C -0.074 4.074 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.397 0.603 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.263 0.737 45 H 0.143 0.857 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 -21.546 0.508 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.341 5.341 4 C -0.032 4.032 5 C -0.240 4.240 6 C 0.350 3.650 7 O -0.409 6.409 8 C -0.121 4.121 9 C -0.132 4.132 10 C -0.114 4.114 11 C -0.104 4.104 12 C 0.330 3.670 13 O -0.421 6.421 14 N -0.363 5.363 15 C -0.002 4.002 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.088 4.088 26 C -0.092 4.092 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.161 0.839 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.690 -21.264 1.478 25.887 hybrid contribution 0.666 0.605 -0.571 1.066 sum -14.024 -20.659 0.907 24.985 Atomic orbital electron populations 1.22125 0.95744 1.02303 1.02467 1.21438 0.94554 0.81834 1.03255 1.47965 1.65875 1.14324 1.05954 1.21941 0.97809 0.98563 0.84896 1.22401 0.97167 1.02713 1.01691 1.18494 0.77441 0.85648 0.83457 1.90781 1.51754 1.67330 1.30986 1.19982 0.99875 0.93860 0.98350 1.21939 0.96096 0.97093 0.98052 1.21362 0.99154 0.92870 0.97978 1.20377 0.98299 0.94455 0.97277 1.18310 0.80043 0.86878 0.81781 1.90751 1.60506 1.52120 1.38723 1.46291 1.40611 1.16064 1.33361 1.21804 0.97226 0.79668 1.01483 1.19327 0.92795 0.98061 0.92301 1.21001 1.22566 0.96633 1.15934 0.92248 1.24994 0.96389 0.97619 0.95270 1.69939 1.30679 1.34445 1.18227 0.86559 0.78828 0.84367 0.77713 1.20093 1.21237 1.20088 1.21275 0.94261 0.95938 0.97338 1.21156 0.99225 0.92104 0.96756 0.92091 0.92541 0.91515 0.90357 0.89788 0.90258 0.88722 0.91354 0.91812 0.90500 0.83263 0.84589 0.76799 0.92245 0.92252 0.95880 0.95886 0.92762 0.83877 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.11 0.75 6.09 -4.04 -0.02 0.73 16 3 N -0.61 -4.90 2.48 -174.72 -0.43 -5.34 16 4 C 0.09 0.52 5.57 -4.04 -0.02 0.50 16 5 C -0.18 -0.85 8.62 37.16 0.32 -0.53 16 6 C 0.56 6.26 7.35 -12.24 -0.09 6.17 16 7 O -0.53 -7.65 16.48 5.34 0.09 -7.56 16 8 C -0.12 -1.26 5.16 -104.90 -0.54 -1.80 16 9 C -0.11 -1.06 7.43 -39.25 -0.29 -1.35 16 10 C -0.09 -1.00 9.53 -39.25 -0.37 -1.37 16 11 C -0.10 -1.34 5.88 -104.89 -0.62 -1.95 16 12 C 0.54 9.21 7.78 -12.24 -0.10 9.12 16 13 O -0.54 -11.07 16.34 5.34 0.09 -10.98 16 14 N -0.71 -12.07 5.51 -61.18 -0.34 -12.41 16 15 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 16 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.07 -0.86 9.58 -39.24 -0.38 -1.23 16 26 C -0.07 -0.83 9.60 -39.24 -0.38 -1.20 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.08 0.68 7.46 -51.93 -0.39 0.30 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.60 5.20 -51.93 -0.27 0.33 16 34 H 0.07 0.38 6.71 -51.93 -0.35 0.03 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.15 1.06 3.22 -52.49 -0.17 0.89 16 38 H 0.14 1.20 6.39 -52.48 -0.34 0.86 16 39 H 0.40 5.66 6.50 -40.82 -0.27 5.39 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.14 1.77 7.64 -52.49 -0.40 1.37 16 46 H 0.14 1.40 8.03 -52.49 -0.42 0.98 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -33.37 379.71 -8.63 -41.99 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.79 Total: 1.35 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.68 Total: -3.98 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.03 Total: -42.60 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.18 Total: -18.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.37 -8.63 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.092 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds