Wall clock time and date at job start Tue Mar 31 2020 13:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47322 * 2 1 4 4 C 1.46500 * 119.99957 * 270.27828 * 3 2 1 5 5 C 1.53004 * 109.46797 * 280.38030 * 4 3 2 6 6 C 1.34778 * 119.99829 * 89.99425 * 3 2 1 7 7 O 1.21531 * 120.00180 * 357.07831 * 6 3 2 8 8 C 1.48038 * 119.99898 * 177.07150 * 6 3 2 9 9 C 1.39556 * 120.00162 * 322.30442 * 8 6 3 10 10 C 1.37814 * 119.99780 * 179.78316 * 9 8 6 11 11 C 1.39552 * 120.00304 * 0.46892 * 10 9 8 12 12 C 1.48040 * 120.00105 * 179.76268 * 11 10 9 13 13 O 1.21528 * 119.99579 * 180.02562 * 12 11 10 14 14 N 1.34769 * 119.99733 * 0.02562 * 12 11 10 15 15 C 1.46506 * 119.99783 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46987 * 179.97438 * 15 14 12 17 17 C 1.50709 * 109.46757 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00232 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99923 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47025 * 59.99647 * 21 19 17 23 23 H 1.48502 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46788 * 299.99497 * 21 19 17 25 25 C 1.39561 * 119.99876 * 359.78582 * 11 10 9 26 26 C 1.37820 * 119.99700 * 359.97438 * 25 11 10 27 27 H 1.08994 * 109.46820 * 299.99783 * 1 2 3 28 28 H 1.08996 * 109.46916 * 60.00049 * 1 2 3 29 29 H 1.09001 * 109.46675 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47550 * 240.00079 * 2 1 3 31 31 H 1.09005 * 109.47467 * 119.99830 * 2 1 3 32 32 H 1.08997 * 109.47220 * 40.38028 * 4 3 2 33 33 H 1.09004 * 109.46868 * 160.37987 * 4 3 2 34 34 H 1.08999 * 109.47064 * 320.39524 * 5 4 3 35 35 H 1.08998 * 109.46929 * 80.39555 * 5 4 3 36 36 H 1.08999 * 109.46890 * 200.39349 * 5 4 3 37 37 H 1.07998 * 119.99816 * 0.02562 * 9 8 6 38 38 H 1.08011 * 119.99794 * 180.20894 * 10 9 8 39 39 H 0.96998 * 120.00835 * 0.02562 * 14 12 11 40 40 H 1.08997 * 109.47371 * 300.00657 * 15 14 12 41 41 H 1.09009 * 109.46642 * 60.00277 * 15 14 12 42 42 H 1.08995 * 109.47623 * 299.99830 * 16 15 14 43 43 H 1.08991 * 109.47178 * 60.00686 * 16 15 14 44 44 H 0.96997 * 120.00051 * 180.02562 * 20 19 17 45 45 H 1.07998 * 119.99896 * 179.97438 * 25 11 10 46 46 H 1.08002 * 119.99950 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2568 2.0739 -1.2687 5 6 3.6019 1.6299 -1.8472 6 6 2.2429 2.0166 1.1672 7 8 1.9901 1.4627 2.2190 8 6 2.7977 3.3891 1.1681 9 6 3.7670 3.7505 0.2315 10 6 4.2802 5.0295 0.2295 11 6 3.8377 5.9604 1.1703 12 6 4.3928 7.3328 1.1714 13 8 4.0077 8.1433 1.9910 14 7 5.3251 7.6833 0.2636 15 6 5.8741 9.0416 0.2644 16 6 6.9059 9.1753 -0.8574 17 6 7.4710 10.5724 -0.8562 18 1 7.1282 11.2930 -0.1284 19 6 8.4249 10.9310 -1.7848 20 7 8.8420 10.0537 -2.6714 21 14 9.1259 12.6625 -1.7828 22 1 9.7785 12.9308 -0.4762 23 1 10.1273 12.7923 -2.8717 24 1 8.0296 13.6406 -1.9988 25 6 2.8721 5.5974 2.1103 26 6 2.3554 4.3198 2.1091 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4604 1.8291 -1.9715 33 1 2.2722 3.1503 -1.0977 34 1 4.3295 1.5325 -1.0415 35 1 3.4828 0.6688 -2.3474 36 1 3.9515 2.3722 -2.5648 37 1 4.1122 3.0290 -0.4943 38 1 5.0280 5.3102 -0.4976 39 1 5.6322 7.0366 -0.3908 40 1 5.0690 9.7590 0.1055 41 1 6.3529 9.2394 1.2235 42 1 7.7110 8.4580 -0.6980 43 1 6.4275 8.9774 -1.8165 44 1 9.5134 10.3059 -3.3245 45 1 2.5300 6.3177 2.8386 46 1 1.6085 4.0387 2.8369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:00 Heat of formation + Delta-G solvation = -66.441226 kcal Electronic energy + Delta-G solvation = -25765.646044 eV Core-core repulsion = 22040.419305 eV Total energy + Delta-G solvation = -3725.226739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82446 -40.89571 -38.99691 -37.44399 -36.67279 -34.89453 -33.76783 -32.72335 -31.69982 -31.28314 -30.45963 -27.17962 -25.81581 -24.55038 -24.02690 -23.55028 -22.84193 -21.74726 -20.37815 -19.13803 -18.53388 -18.35129 -17.76064 -16.92199 -16.56628 -16.51916 -16.41868 -16.25271 -15.69478 -15.42728 -15.23580 -14.95738 -14.64499 -14.62881 -14.28559 -14.07420 -13.89267 -13.65439 -13.45871 -13.39722 -13.21822 -12.94921 -12.91059 -12.62026 -12.54650 -12.24107 -12.16741 -11.94307 -11.90116 -11.68687 -11.48139 -11.15580 -10.95526 -10.59038 -10.28750 -10.09912 -9.96812 -9.77714 -8.22983 -6.32785 -0.60920 0.22826 1.33632 1.43253 1.44909 1.52788 1.81531 1.98805 2.13005 2.44285 2.72838 3.11960 3.27337 3.62445 3.72017 3.79473 4.01488 4.14330 4.17553 4.21511 4.27129 4.41691 4.44762 4.49087 4.49107 4.54709 4.58974 4.75580 4.84498 4.85856 4.91591 4.99200 5.03760 5.06285 5.15620 5.21127 5.23047 5.27291 5.38978 5.47682 5.54493 5.59405 5.64523 5.79279 6.16952 6.23591 6.53061 6.79684 6.98212 7.14444 7.36178 8.88423 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.002240 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.320204 B =12496.108774 C =13492.033641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.084 3.916 5 C -0.181 4.181 6 C 0.556 3.444 7 O -0.573 6.573 8 C -0.116 4.116 9 C -0.098 4.098 10 C -0.085 4.085 11 C -0.117 4.117 12 C 0.546 3.454 13 O -0.583 6.583 14 N -0.707 5.707 15 C 0.138 3.862 16 C 0.023 3.977 17 C -0.548 4.548 18 H 0.058 0.942 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.962 3.038 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.269 1.269 25 C -0.073 4.073 26 C -0.077 4.077 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.412 0.588 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.011 0.989 43 H 0.013 0.987 44 H 0.266 0.734 45 H 0.136 0.864 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.402 -22.698 -1.205 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.330 5.330 4 C -0.037 4.037 5 C -0.239 4.239 6 C 0.345 3.655 7 O -0.453 6.453 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.104 4.104 11 C -0.120 4.120 12 C 0.335 3.665 13 O -0.464 6.464 14 N -0.358 5.358 15 C 0.015 3.985 16 C -0.014 4.014 17 C -0.586 4.586 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.194 1.194 25 C -0.092 4.092 26 C -0.096 4.096 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.249 0.751 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.154 0.846 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.668 -22.447 -0.285 26.816 hybrid contribution 0.600 0.842 -0.085 1.037 sum -14.069 -21.605 -0.369 25.784 Atomic orbital electron populations 1.22083 0.95323 1.03124 1.01619 1.21607 0.94885 0.81086 1.03896 1.48092 1.64308 1.14736 1.05890 1.22171 0.99443 0.98100 0.84027 1.22392 0.95950 1.03861 1.01654 1.18586 0.77435 0.85680 0.83846 1.90763 1.53791 1.68197 1.32589 1.20139 0.99860 0.93699 0.98245 1.22179 0.94779 0.96927 0.97699 1.21553 0.98945 0.92607 0.97272 1.20108 0.99694 0.92932 0.99307 1.18794 0.79160 0.87974 0.80615 1.90726 1.61760 1.53705 1.40238 1.46046 1.40707 1.14949 1.34051 1.21315 0.96038 0.81605 0.99544 1.19136 0.92963 0.96508 0.92832 1.21431 1.23042 0.98070 1.16068 0.92379 1.25828 0.96715 1.01620 0.94884 1.70034 1.31209 1.36289 1.18803 0.85539 0.78230 0.79598 0.77928 1.19530 1.20605 1.19403 1.21231 0.94397 0.96315 0.97266 1.21190 0.99443 0.91740 0.97214 0.94724 0.91473 0.89952 0.87289 0.91520 0.88178 0.89238 0.92177 0.90576 0.89205 0.80601 0.82531 0.75088 0.93155 0.93348 0.97056 0.96879 0.92528 0.84566 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.24 71.98 0.74 -1.05 16 2 C 0.11 1.23 6.09 86.38 0.53 1.76 16 3 N -0.60 -8.48 2.48 -824.98 -2.04 -10.52 16 4 C 0.08 0.70 5.57 86.38 0.48 1.18 16 5 C -0.18 -1.02 8.62 71.98 0.62 -0.40 16 6 C 0.56 11.92 7.35 86.84 0.64 12.56 16 7 O -0.57 -16.65 16.48 -3.81 -0.06 -16.71 16 8 C -0.12 -2.36 5.16 -20.04 -0.10 -2.46 16 9 C -0.10 -1.60 7.43 22.49 0.17 -1.43 16 10 C -0.09 -1.63 9.53 22.49 0.21 -1.41 16 11 C -0.12 -3.05 5.88 -20.04 -0.12 -3.16 16 12 C 0.55 18.55 7.78 86.85 0.68 19.23 16 13 O -0.58 -24.36 16.34 -3.81 -0.06 -24.43 16 14 N -0.71 -23.70 5.51 -465.78 -2.56 -26.27 16 15 C 0.14 5.79 5.61 86.38 0.48 6.27 16 16 C 0.02 1.12 5.09 29.85 0.15 1.27 16 17 C -0.55 -29.91 9.11 25.60 0.23 -29.68 16 18 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.92 -52.75 13.29 21.45 0.28 -52.46 16 21 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.07 -1.82 9.58 22.49 0.22 -1.61 16 26 C -0.08 -1.72 9.60 22.49 0.22 -1.50 16 27 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.61 8.07 -2.38 -0.02 0.59 16 31 H 0.07 1.03 7.46 -2.38 -0.02 1.02 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.87 5.20 -2.38 -0.01 0.85 16 34 H 0.06 0.47 6.71 -2.39 -0.02 0.45 16 35 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.18 1.91 3.22 -2.91 -0.01 1.90 16 38 H 0.16 2.31 6.39 -2.90 -0.02 2.29 16 39 H 0.41 11.26 6.50 -92.71 -0.60 10.66 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.14 3.52 7.64 -2.91 -0.02 3.50 16 46 H 0.14 2.96 8.03 -2.91 -0.02 2.93 16 Total: -1.00 -72.91 379.71 3.57 -69.34 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.39 Total: 15.67 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.60 Total: 0.50 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -4.32 Total: -89.25 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.12 Total: -41.14 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -72.91 3.57 -69.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.894 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds