Wall clock time and date at job start Tue Mar 31 2020 13:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47431 * 2 1 4 4 C 1.36906 * 119.99593 * 275.79720 * 3 2 1 5 5 H 1.07997 * 119.99456 * 146.62502 * 4 3 2 6 6 C 1.39017 * 120.00260 * 326.62554 * 4 3 2 7 7 N 1.31387 * 120.00133 * 336.25392 * 6 4 3 8 8 Si 1.86803 * 120.00171 * 156.25170 * 6 4 3 9 9 H 1.48498 * 109.47269 * 90.00169 * 8 6 4 10 10 H 1.48499 * 109.47083 * 209.99891 * 8 6 4 11 11 H 1.48497 * 109.47028 * 329.99844 * 8 6 4 12 12 C 1.34770 * 120.00336 * 95.79496 * 3 2 1 13 13 O 1.21629 * 120.00098 * 179.97438 * 12 3 2 14 14 C 1.47420 * 119.99950 * 0.02562 * 12 3 2 15 15 C 1.40037 * 120.60441 * 269.99681 * 14 12 3 16 16 C 1.50703 * 120.82904 * 359.97438 * 15 14 12 17 17 C 1.38327 * 118.34689 * 179.70103 * 15 14 12 18 18 C 1.38365 * 119.46021 * 0.28099 * 17 15 14 19 19 C 1.50704 * 119.39785 * 179.97438 * 18 17 15 20 20 N 1.31898 * 121.20295 * 359.97033 * 18 17 15 21 21 C 1.32211 * 121.80157 * 0.02743 * 20 18 17 22 22 O 1.35431 * 119.80269 * 180.02562 * 21 20 18 23 23 C 1.42897 * 117.00236 * 359.97438 * 22 21 20 24 24 C 1.53783 * 113.61826 * 247.50053 * 23 22 21 25 25 C 1.53780 * 87.08110 * 220.01484 * 24 23 22 26 26 C 1.53777 * 113.61829 * 149.99842 * 23 22 21 27 27 H 1.08997 * 109.47193 * 60.00223 * 1 2 3 28 28 H 1.08998 * 109.47731 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47081 * 300.00323 * 1 2 3 30 30 H 1.08999 * 109.47560 * 239.99457 * 2 1 3 31 31 H 1.08997 * 109.47193 * 119.99777 * 2 1 3 32 32 H 0.97000 * 119.99695 * 180.02562 * 7 6 4 33 33 H 1.09009 * 109.46498 * 269.71830 * 16 15 14 34 34 H 1.08999 * 109.47527 * 149.71927 * 16 15 14 35 35 H 1.09004 * 109.47144 * 29.71602 * 16 15 14 36 36 H 1.07998 * 120.27009 * 180.29470 * 17 15 14 37 37 H 1.08995 * 109.47249 * 90.00126 * 19 18 17 38 38 H 1.09009 * 109.46867 * 209.99733 * 19 18 17 39 39 H 1.09002 * 109.47195 * 329.99000 * 19 18 17 40 40 H 1.09007 * 112.84733 * 18.80089 * 23 22 21 41 41 H 1.09003 * 113.61312 * 334.56787 * 24 23 22 42 42 H 1.08999 * 113.61453 * 105.46176 * 24 23 22 43 43 H 1.08996 * 113.61127 * 270.87897 * 25 24 23 44 44 H 1.09003 * 113.60852 * 139.97752 * 25 24 23 45 45 H 1.08999 * 113.61984 * 254.53535 * 26 23 22 46 46 H 1.09000 * 113.61131 * 25.35396 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1336 2.0664 -1.1796 5 1 1.9592 3.1319 -1.2043 6 6 2.4752 1.3907 -2.3455 7 7 3.1268 0.2518 -2.2779 8 14 2.0077 2.1019 -4.0084 9 1 3.0996 2.9832 -4.4945 10 1 1.7952 0.9968 -4.9774 11 1 0.7568 2.8909 -3.8753 12 6 2.3541 1.9773 1.1611 13 8 2.7600 3.1238 1.1610 14 6 2.2305 1.2392 2.4313 15 6 1.0400 1.2817 3.1675 16 6 -0.1409 2.0815 2.6809 17 6 0.9731 0.5666 4.3497 18 6 2.0743 -0.1580 4.7701 19 6 2.0000 -0.9361 6.0585 20 7 3.1879 -0.1802 4.0636 21 6 3.3054 0.4850 2.9270 22 8 4.4677 0.4333 2.2339 23 6 5.5203 -0.3570 2.7902 24 6 6.7263 0.4701 3.2658 25 6 7.6172 -0.6422 2.6878 26 6 6.4558 -0.9684 1.7339 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3654 -0.2195 -3.0915 33 1 -0.0825 3.0945 3.0792 34 1 -1.0635 1.6103 3.0200 35 1 -0.1308 2.1182 1.5915 36 1 0.0685 0.5736 4.9397 37 1 1.6390 -1.9440 5.8540 38 1 2.9915 -0.9896 6.5084 39 1 1.3160 -0.4374 6.7453 40 1 5.1647 -1.0768 3.5276 41 1 6.8311 1.4252 2.7511 42 1 6.7919 0.5630 4.3499 43 1 7.8360 -1.4395 3.3980 44 1 8.5072 -0.2694 2.1807 45 1 6.3031 -2.0367 1.5812 46 1 6.4856 -0.4073 0.7999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348165479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:54 Heat of formation + Delta-G solvation = -12.307425 kcal Electronic energy + Delta-G solvation = -28360.247098 eV Core-core repulsion = 24637.367777 eV Total energy + Delta-G solvation = -3722.879321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.61158 -38.96565 -38.03511 -36.24275 -34.90110 -33.77178 -31.86241 -31.45860 -29.46077 -28.26577 -27.25386 -25.50708 -25.26848 -24.62811 -22.79325 -22.06787 -21.15672 -19.73847 -18.96852 -17.89397 -16.85962 -16.59552 -16.18329 -15.35245 -15.12067 -14.88228 -14.79185 -14.29213 -14.02356 -13.76116 -13.37398 -13.23193 -13.19871 -12.63397 -12.57178 -12.42387 -12.28423 -12.25164 -12.04560 -11.83363 -11.74321 -11.54371 -11.44422 -11.19717 -11.02414 -10.97478 -10.87867 -10.34415 -10.31447 -10.26627 -9.99238 -9.97330 -9.48458 -9.16343 -8.92397 -8.41525 -7.87163 -7.43269 -6.27262 -3.89347 1.36980 1.60030 3.18212 3.27614 3.33117 3.42485 3.85164 3.94419 4.19568 4.38961 4.72830 4.74322 4.84058 4.91628 5.02528 5.04807 5.06930 5.30551 5.37279 5.46049 5.55691 5.59171 5.64354 5.76334 5.78129 5.85599 5.87228 5.95592 5.97871 5.99848 6.06096 6.12394 6.18265 6.24452 6.29741 6.34130 6.38181 6.49245 6.63363 6.65325 6.83551 6.96036 7.35324 7.64773 7.74019 8.16842 8.27798 8.55310 9.20826 9.45050 10.05717 10.73711 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005895 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.799549 B = 4748.872160 C = 6430.494050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 N -0.423 5.423 4 C -0.308 4.308 5 H 0.093 0.907 6 C 0.038 3.962 7 N -0.861 5.861 8 Si 0.915 3.085 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.512 3.488 13 O -0.575 6.575 14 C -0.166 4.166 15 C 0.015 3.985 16 C -0.123 4.123 17 C -0.218 4.218 18 C 0.163 3.837 19 C -0.100 4.100 20 N -0.549 5.549 21 C 0.355 3.645 22 O -0.270 6.270 23 C 0.060 3.940 24 C -0.151 4.151 25 C -0.138 4.138 26 C -0.134 4.134 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -6.381 12.265 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.141 5.141 4 C -0.436 4.436 5 H 0.111 0.889 6 C -0.166 4.166 7 N -0.499 5.499 8 Si 0.741 3.259 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.299 3.701 13 O -0.459 6.459 14 C -0.172 4.172 15 C 0.007 3.993 16 C -0.179 4.179 17 C -0.239 4.239 18 C 0.026 3.974 19 C -0.157 4.157 20 N -0.274 5.274 21 C 0.176 3.824 22 O -0.175 6.175 23 C 0.003 3.997 24 C -0.189 4.189 25 C -0.176 4.176 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.417 -6.319 12.114 13.670 hybrid contribution -0.763 0.451 -0.945 1.296 sum -1.180 -5.868 11.169 12.672 Atomic orbital electron populations 1.22259 0.98112 1.00256 1.01858 1.21593 0.92208 0.85493 1.03672 1.43393 1.54203 1.11813 1.04645 1.19394 1.46290 0.94386 0.83526 0.88923 1.25315 0.94910 0.96568 0.99842 1.69901 1.33781 1.17099 1.29088 0.86131 0.79432 0.78622 0.81711 1.20306 1.20840 1.19379 1.17678 0.82040 0.87342 0.83083 1.90624 1.50197 1.18395 1.86670 1.20159 0.93125 1.03448 1.00469 1.20157 0.93568 0.93234 0.92339 1.20990 0.94207 0.99346 1.03378 1.21461 1.00369 1.03346 0.98692 1.20848 0.87809 0.93806 0.94933 1.20689 1.03276 0.99309 0.92420 1.66973 1.27787 1.24923 1.07733 1.19711 0.86300 0.89183 0.87238 1.86521 1.19358 1.65637 1.45993 1.24116 0.84195 0.93994 0.97351 1.23430 0.95267 0.99135 1.01030 1.22614 0.97131 0.98715 0.99096 1.23241 0.93902 1.01254 0.98797 0.92202 0.93422 0.93363 0.86715 0.94057 0.92288 0.90207 0.90951 0.89650 0.84851 0.90492 0.90736 0.90735 0.86952 0.89107 0.91231 0.90066 0.90646 0.90868 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.15 37.15 0.38 -2.83 16 2 C 0.09 2.19 5.67 -4.05 -0.02 2.17 16 3 N -0.42 -11.10 2.55 -116.04 -0.30 -11.40 16 4 C -0.31 -8.66 8.94 -15.00 -0.13 -8.79 16 5 H 0.09 2.72 7.70 -52.49 -0.40 2.31 16 6 C 0.04 1.02 4.99 -17.45 -0.09 0.93 16 7 N -0.86 -23.40 11.25 55.50 0.62 -22.78 16 8 Si 0.91 20.63 29.62 -169.99 -5.03 15.59 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.51 13.45 5.23 -12.53 -0.07 13.39 16 13 O -0.58 -17.24 16.92 5.25 0.09 -17.15 16 14 C -0.17 -3.66 3.84 -104.69 -0.40 -4.06 16 15 C 0.01 0.27 5.80 -103.91 -0.60 -0.34 16 16 C -0.12 -1.95 8.61 36.01 0.31 -1.64 16 17 C -0.22 -3.23 9.41 -39.50 -0.37 -3.61 16 18 C 0.16 2.45 6.78 -82.51 -0.56 1.90 16 19 C -0.10 -1.02 10.16 36.01 0.37 -0.66 16 20 N -0.55 -9.88 8.49 -9.19 -0.08 -9.96 16 21 C 0.36 7.54 7.13 -16.59 -0.12 7.42 16 22 O -0.27 -5.96 9.59 -17.98 -0.17 -6.13 16 23 C 0.06 1.03 4.18 -25.92 -0.11 0.92 16 24 C -0.15 -2.23 7.91 -25.92 -0.21 -2.43 16 25 C -0.14 -1.70 8.08 -25.92 -0.21 -1.91 16 26 C -0.13 -2.05 7.91 -25.92 -0.21 -2.26 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.86 4.85 -51.93 -0.25 0.61 16 30 H 0.12 2.91 5.30 -51.93 -0.28 2.64 16 31 H 0.04 0.94 6.37 -51.93 -0.33 0.61 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 34 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.08 1.57 5.44 -51.93 -0.28 1.28 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.11 1.82 6.87 -51.92 -0.36 1.46 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -33.20 373.18 -8.23 -41.43 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.95 Total: 6.58 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.04 Total: -1.81 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.25 Total: -44.14 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.08 Total: -23.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.20 -8.23 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348165479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.121 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds