Wall clock time and date at job start Tue Mar 31 2020 13:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47431 * 2 1 4 4 C 1.36906 * 119.99593 * 275.79720 * 3 2 1 5 5 H 1.07997 * 119.99456 * 146.62502 * 4 3 2 6 6 C 1.39017 * 120.00260 * 326.62554 * 4 3 2 7 7 N 1.31387 * 120.00133 * 336.25392 * 6 4 3 8 8 Si 1.86803 * 120.00171 * 156.25170 * 6 4 3 9 9 H 1.48498 * 109.47269 * 90.00169 * 8 6 4 10 10 H 1.48499 * 109.47083 * 209.99891 * 8 6 4 11 11 H 1.48497 * 109.47028 * 329.99844 * 8 6 4 12 12 C 1.34770 * 120.00336 * 95.79496 * 3 2 1 13 13 O 1.21629 * 120.00098 * 179.97438 * 12 3 2 14 14 C 1.47420 * 119.99950 * 0.02562 * 12 3 2 15 15 C 1.40037 * 120.60441 * 269.99681 * 14 12 3 16 16 C 1.50703 * 120.82904 * 359.97438 * 15 14 12 17 17 C 1.38327 * 118.34689 * 179.70103 * 15 14 12 18 18 C 1.38365 * 119.46021 * 0.28099 * 17 15 14 19 19 C 1.50704 * 119.39785 * 179.97438 * 18 17 15 20 20 N 1.31898 * 121.20295 * 359.97033 * 18 17 15 21 21 C 1.32211 * 121.80157 * 0.02743 * 20 18 17 22 22 O 1.35431 * 119.80269 * 180.02562 * 21 20 18 23 23 C 1.42897 * 117.00236 * 359.97438 * 22 21 20 24 24 C 1.53783 * 113.61826 * 247.50053 * 23 22 21 25 25 C 1.53780 * 87.08110 * 220.01484 * 24 23 22 26 26 C 1.53777 * 113.61829 * 149.99842 * 23 22 21 27 27 H 1.08997 * 109.47193 * 60.00223 * 1 2 3 28 28 H 1.08998 * 109.47731 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47081 * 300.00323 * 1 2 3 30 30 H 1.08999 * 109.47560 * 239.99457 * 2 1 3 31 31 H 1.08997 * 109.47193 * 119.99777 * 2 1 3 32 32 H 0.97000 * 119.99695 * 180.02562 * 7 6 4 33 33 H 1.09009 * 109.46498 * 269.71830 * 16 15 14 34 34 H 1.08999 * 109.47527 * 149.71927 * 16 15 14 35 35 H 1.09004 * 109.47144 * 29.71602 * 16 15 14 36 36 H 1.07998 * 120.27009 * 180.29470 * 17 15 14 37 37 H 1.08995 * 109.47249 * 90.00126 * 19 18 17 38 38 H 1.09009 * 109.46867 * 209.99733 * 19 18 17 39 39 H 1.09002 * 109.47195 * 329.99000 * 19 18 17 40 40 H 1.09007 * 112.84733 * 18.80089 * 23 22 21 41 41 H 1.09003 * 113.61312 * 334.56787 * 24 23 22 42 42 H 1.08999 * 113.61453 * 105.46176 * 24 23 22 43 43 H 1.08996 * 113.61127 * 270.87897 * 25 24 23 44 44 H 1.09003 * 113.60852 * 139.97752 * 25 24 23 45 45 H 1.08999 * 113.61984 * 254.53535 * 26 23 22 46 46 H 1.09000 * 113.61131 * 25.35396 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1336 2.0664 -1.1796 5 1 1.9592 3.1319 -1.2043 6 6 2.4752 1.3907 -2.3455 7 7 3.1268 0.2518 -2.2779 8 14 2.0077 2.1019 -4.0084 9 1 3.0996 2.9832 -4.4945 10 1 1.7952 0.9968 -4.9774 11 1 0.7568 2.8909 -3.8753 12 6 2.3541 1.9773 1.1611 13 8 2.7600 3.1238 1.1610 14 6 2.2305 1.2392 2.4313 15 6 1.0400 1.2817 3.1675 16 6 -0.1409 2.0815 2.6809 17 6 0.9731 0.5666 4.3497 18 6 2.0743 -0.1580 4.7701 19 6 2.0000 -0.9361 6.0585 20 7 3.1879 -0.1802 4.0636 21 6 3.3054 0.4850 2.9270 22 8 4.4677 0.4333 2.2339 23 6 5.5203 -0.3570 2.7902 24 6 6.7263 0.4701 3.2658 25 6 7.6172 -0.6422 2.6878 26 6 6.4558 -0.9684 1.7339 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3654 -0.2195 -3.0915 33 1 -0.0825 3.0945 3.0792 34 1 -1.0635 1.6103 3.0200 35 1 -0.1308 2.1182 1.5915 36 1 0.0685 0.5736 4.9397 37 1 1.6390 -1.9440 5.8540 38 1 2.9915 -0.9896 6.5084 39 1 1.3160 -0.4374 6.7453 40 1 5.1647 -1.0768 3.5276 41 1 6.8311 1.4252 2.7511 42 1 6.7919 0.5630 4.3499 43 1 7.8360 -1.4395 3.3980 44 1 8.5072 -0.2694 2.1807 45 1 6.3031 -2.0367 1.5812 46 1 6.4856 -0.4073 0.7999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348165479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:53 Heat of formation + Delta-G solvation = -33.996439 kcal Electronic energy + Delta-G solvation = -28361.187605 eV Core-core repulsion = 24637.367777 eV Total energy + Delta-G solvation = -3723.819827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.05199 -40.42802 -39.75310 -37.58028 -36.94183 -35.17847 -33.83817 -32.73186 -31.27260 -29.67248 -28.42035 -27.02481 -26.71562 -26.07594 -24.32385 -23.72090 -22.52238 -21.30487 -20.38348 -19.28130 -18.85925 -18.17979 -17.87809 -17.04590 -16.73659 -16.24169 -16.14420 -15.96921 -15.45674 -15.10016 -15.01523 -14.71978 -14.65826 -14.10980 -14.00374 -13.66130 -13.61546 -13.54207 -13.45710 -13.38300 -13.14832 -12.95141 -12.88511 -12.74700 -12.63347 -12.36938 -12.28146 -12.15163 -12.09545 -11.78567 -11.45980 -11.21080 -11.09805 -10.94044 -10.47739 -10.27017 -9.50490 -9.29159 -8.33931 -6.06037 0.00294 0.24893 1.34275 1.39343 1.53265 1.90929 2.07849 2.28160 2.61302 2.97673 3.01420 3.25215 3.53213 3.54778 3.67695 3.82378 3.84439 3.92371 4.01158 4.20344 4.25462 4.40773 4.49781 4.57224 4.60555 4.64227 4.67186 4.70249 4.71002 4.75365 4.87374 4.88611 4.92091 4.93588 5.00551 5.04153 5.08387 5.22950 5.25013 5.29580 5.35660 5.43051 5.55729 5.64326 6.15833 6.36229 6.50128 6.83332 7.12603 7.41541 8.02819 8.66066 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005895 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.799549 B = 4748.872160 C = 6430.494050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.100 3.900 3 N -0.429 5.429 4 C -0.346 4.346 5 H 0.066 0.934 6 C 0.005 3.995 7 N -0.883 5.883 8 Si 0.983 3.017 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.263 1.263 12 C 0.508 3.492 13 O -0.634 6.634 14 C -0.210 4.210 15 C 0.012 3.988 16 C -0.121 4.121 17 C -0.203 4.203 18 C 0.165 3.835 19 C -0.096 4.096 20 N -0.550 5.550 21 C 0.335 3.665 22 O -0.313 6.313 23 C 0.045 3.955 24 C -0.152 4.152 25 C -0.112 4.112 26 C -0.141 4.141 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.274 0.726 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.052 0.948 36 H 0.184 0.816 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -8.606 14.619 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 N -0.145 5.145 4 C -0.474 4.474 5 H 0.084 0.916 6 C -0.198 4.198 7 N -0.520 5.520 8 Si 0.805 3.195 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.188 1.188 12 C 0.297 3.703 13 O -0.522 6.522 14 C -0.216 4.216 15 C 0.004 3.996 16 C -0.177 4.177 17 C -0.223 4.223 18 C 0.028 3.972 19 C -0.152 4.152 20 N -0.276 5.276 21 C 0.157 3.843 22 O -0.220 6.220 23 C -0.011 4.011 24 C -0.189 4.189 25 C -0.149 4.149 26 C -0.179 4.179 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.071 0.929 36 H 0.202 0.798 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.018 -8.591 14.470 16.949 hybrid contribution -0.260 1.085 -1.562 1.920 sum -2.278 -7.506 12.907 15.104 Atomic orbital electron populations 1.22156 0.94813 1.02338 1.02059 1.21574 0.94847 0.83660 1.02285 1.43594 1.53969 1.12618 1.04361 1.19373 1.48748 0.93839 0.85393 0.91607 1.26136 0.93892 0.96813 1.02915 1.69990 1.33569 1.17975 1.30450 0.85124 0.79011 0.78302 0.77014 1.20479 1.18895 1.18756 1.18303 0.80542 0.86811 0.84665 1.90543 1.52704 1.21071 1.87920 1.19966 0.95880 1.06102 0.99700 1.20509 0.92551 0.93508 0.93058 1.21041 0.95466 0.99893 1.01320 1.21960 1.02019 1.01058 0.97251 1.21895 0.86769 0.92827 0.95747 1.20868 1.04554 0.99816 0.90005 1.67106 1.29293 1.24511 1.06729 1.19825 0.85911 0.90189 0.88391 1.86467 1.20770 1.66923 1.47838 1.24537 0.83765 0.94558 0.98231 1.23400 0.95066 0.98567 1.01899 1.22605 0.95951 0.98166 0.98174 1.23254 0.95485 1.01424 0.97694 0.93375 0.90216 0.91835 0.89056 0.94196 0.91603 0.89922 0.86385 0.92893 0.79829 0.88481 0.90509 0.87427 0.85925 0.91727 0.89442 0.86792 0.89420 0.89449 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 10.15 71.98 0.73 -5.24 16 2 C 0.10 4.82 5.67 86.38 0.49 5.31 16 3 N -0.43 -23.98 2.55 -639.29 -1.63 -25.61 16 4 C -0.35 -20.71 8.94 84.09 0.75 -19.96 16 5 H 0.07 4.19 7.70 -2.91 -0.02 4.17 16 6 C 0.01 0.30 4.99 84.95 0.42 0.72 16 7 N -0.88 -49.78 11.25 21.68 0.24 -49.53 16 8 Si 0.98 43.45 29.62 68.60 2.03 45.48 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 12 C 0.51 28.63 5.23 86.66 0.45 29.08 16 13 O -0.63 -41.34 16.92 -4.12 -0.07 -41.41 16 14 C -0.21 -9.65 3.84 -19.91 -0.08 -9.73 16 15 C 0.01 0.40 5.80 -19.41 -0.11 0.29 16 16 C -0.12 -3.69 8.61 71.24 0.61 -3.08 16 17 C -0.20 -5.26 9.41 22.32 0.21 -5.05 16 18 C 0.16 4.44 6.78 42.58 0.29 4.73 16 19 C -0.10 -1.47 10.16 71.24 0.72 -0.75 16 20 N -0.55 -19.35 8.49 -296.00 -2.51 -21.87 16 21 C 0.34 14.74 7.13 85.15 0.61 15.34 16 22 O -0.31 -14.82 9.59 -87.27 -0.84 -15.66 16 23 C 0.04 1.58 4.18 31.12 0.13 1.71 16 24 C -0.15 -4.57 7.91 31.12 0.25 -4.32 16 25 C -0.11 -2.64 8.08 31.12 0.25 -2.39 16 26 C -0.14 -4.46 7.91 31.12 0.25 -4.22 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.06 2.22 4.85 -2.39 -0.01 2.21 16 30 H 0.09 4.84 5.30 -2.39 -0.01 4.83 16 31 H 0.04 1.90 6.37 -2.39 -0.02 1.88 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.12 2.43 8.10 -2.39 -0.02 2.41 16 35 H 0.05 1.98 5.44 -2.38 -0.01 1.96 16 36 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.11 1.03 8.07 -2.39 -0.02 1.01 16 40 H 0.12 3.97 6.87 -2.38 -0.02 3.95 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -81.63 373.18 4.18 -77.45 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.98 Total: 28.69 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.98 Total: 2.45 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.90 Total: -97.01 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.91 Total: -57.07 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -81.63 4.18 -77.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348165479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.452 kcal (2) G-P(sol) polarization free energy of solvation -81.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds