Wall clock time and date at job start Tue Mar 31 2020 12:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47227 * 2 1 4 4 N 1.46507 * 109.46982 * 240.00029 * 2 1 3 5 5 C 1.34772 * 120.00019 * 84.72587 * 4 2 1 6 6 O 1.21286 * 120.00185 * 0.27335 * 5 4 2 7 7 C 1.50701 * 120.00272 * 180.27162 * 5 4 2 8 8 C 1.52994 * 109.47410 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47342 * 305.37337 * 8 7 5 10 10 C 1.50705 * 109.47224 * 65.37008 * 8 7 5 11 11 H 1.08003 * 119.99904 * 34.61925 * 10 8 7 12 12 C 1.37872 * 120.00284 * 214.61982 * 10 8 7 13 13 N 1.31516 * 119.99937 * 186.44657 * 12 10 8 14 14 Si 1.86794 * 120.00012 * 6.44801 * 12 10 8 15 15 H 1.48504 * 109.47580 * 85.00842 * 14 12 10 16 16 H 1.48505 * 109.47234 * 205.00747 * 14 12 10 17 17 H 1.48500 * 109.47389 * 325.00930 * 14 12 10 18 18 C 1.50696 * 109.47455 * 185.37121 * 8 7 5 19 19 C 1.38240 * 119.99983 * 296.36377 * 18 8 7 20 20 C 1.38231 * 120.00539 * 179.78650 * 19 18 8 21 21 C 1.38240 * 119.99517 * 0.43778 * 20 19 18 22 22 C 1.38240 * 120.00072 * 359.81736 * 21 20 19 23 23 C 1.38234 * 120.00309 * 116.62993 * 18 8 7 24 24 C 1.50696 * 109.46990 * 120.00287 * 2 1 3 25 25 O 1.21280 * 120.00324 * 120.00553 * 24 2 1 26 26 N 1.34775 * 119.99909 * 299.99513 * 24 2 1 27 27 C 1.46497 * 120.00171 * 180.02562 * 26 24 2 28 28 C 1.46501 * 120.00079 * 0.02562 * 26 24 2 29 29 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47288 * 300.00087 * 1 2 3 31 31 H 1.09000 * 109.46895 * 59.99842 * 1 2 3 32 32 H 0.97001 * 119.99982 * 265.00148 * 4 2 1 33 33 H 1.08997 * 109.47308 * 300.00572 * 7 5 4 34 34 H 1.09009 * 109.46807 * 60.00120 * 7 5 4 35 35 H 0.97003 * 119.99810 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.99841 * 359.97438 * 19 18 8 37 37 H 1.07994 * 120.00858 * 180.27080 * 20 19 18 38 38 H 1.07998 * 120.00274 * 179.83788 * 21 20 19 39 39 H 1.08002 * 119.99976 * 180.02562 * 22 21 20 40 40 H 1.07993 * 119.99760 * 359.97438 * 23 18 8 41 41 H 1.09000 * 109.46772 * 90.00523 * 27 26 24 42 42 H 1.09001 * 109.47138 * 209.99969 * 27 26 24 43 43 H 1.09003 * 109.47289 * 330.00495 * 27 26 24 44 44 H 1.08996 * 109.47075 * 89.99307 * 28 26 24 45 45 H 1.08998 * 109.47748 * 209.99686 * 28 26 24 46 46 H 1.09004 * 109.46888 * 330.00110 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1418 -0.0197 -2.3585 6 8 1.8534 1.1571 -2.4130 7 6 2.6383 -0.7315 -3.5905 8 6 2.6839 0.2500 -4.7632 9 1 1.7051 0.7134 -4.8875 10 6 3.7128 1.3159 -4.4864 11 1 4.6148 1.0685 -3.9465 12 6 3.5025 2.6068 -4.9225 13 7 4.4525 3.5072 -4.7941 14 14 1.8684 3.0770 -5.6956 15 1 0.8992 3.4316 -4.6277 16 1 2.0632 4.2432 -6.5943 17 1 1.3433 1.9303 -6.4795 18 6 3.0532 -0.4894 -6.0233 19 6 4.2901 -1.0973 -6.1307 20 6 4.6273 -1.7794 -7.2847 21 6 3.7310 -1.8460 -8.3350 22 6 2.4961 -1.2336 -8.2297 23 6 2.1573 -0.5553 -7.0739 24 6 2.0323 -0.7105 1.2304 25 8 2.7297 -1.6965 1.1192 26 7 1.7068 -0.2500 2.4545 27 6 2.1955 -0.9403 3.6507 28 6 0.8642 0.9409 2.5890 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.6382 -1.1238 -3.4054 34 1 1.9644 -1.5538 -3.8314 35 1 4.3044 4.4156 -5.1006 36 1 4.9920 -1.0419 -5.3116 37 1 5.5919 -2.2580 -7.3670 38 1 3.9953 -2.3766 -9.2377 39 1 1.7956 -1.2860 -9.0501 40 1 1.1925 -0.0771 -6.9915 41 1 3.1556 -0.5178 3.9471 42 1 1.4776 -0.8150 4.4613 43 1 2.3170 -2.0015 3.4336 44 1 -0.1837 0.6427 2.6224 45 1 1.1218 1.4665 3.5084 46 1 1.0273 1.5996 1.7359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356102454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:55 Heat of formation + Delta-G solvation = -62.742133 kcal Electronic energy + Delta-G solvation = -26928.132599 eV Core-core repulsion = 23203.066265 eV Total energy + Delta-G solvation = -3725.066334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57522 -40.48296 -39.70386 -36.77923 -36.30808 -35.59167 -33.74486 -32.22428 -31.59040 -30.25085 -28.72892 -27.77789 -27.53027 -24.93121 -23.96760 -23.26087 -21.68276 -20.96132 -20.48023 -19.01048 -18.57090 -17.86678 -17.55739 -17.00144 -16.81618 -16.49385 -16.18526 -15.96494 -15.66592 -15.34779 -14.86936 -14.83662 -14.63136 -14.34879 -14.14076 -13.96605 -13.80944 -13.71183 -13.52821 -13.35254 -13.28132 -13.07172 -12.93128 -12.73084 -12.63304 -12.42050 -12.08210 -11.90639 -11.78541 -11.46153 -11.09730 -10.99830 -10.67259 -10.54417 -10.09793 -9.76345 -9.61213 -9.29833 -8.20797 -6.17600 0.69303 0.73939 1.33584 1.38021 1.41265 1.43925 1.70899 1.92251 2.41173 2.43596 3.08554 3.25952 3.31052 3.94193 4.04496 4.11637 4.15023 4.21961 4.31360 4.32410 4.39632 4.45189 4.45559 4.49337 4.58697 4.64596 4.72387 4.79321 4.85588 4.86954 4.88455 4.90389 5.08098 5.17155 5.20596 5.38363 5.38544 5.41252 5.48598 5.69422 5.77541 5.83045 6.03731 6.15768 6.34102 6.37504 6.64202 6.81090 6.93194 7.45393 7.46701 8.96292 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003646 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.635426 B = 7676.987117 C = 8617.705556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.095 0.905 4 N -0.719 5.719 5 C 0.518 3.482 6 O -0.552 6.552 7 C -0.114 4.114 8 C 0.059 3.941 9 H 0.037 0.963 10 C -0.466 4.466 11 H 0.030 0.970 12 C 0.024 3.976 13 N -0.954 5.954 14 Si 0.926 3.074 15 H -0.282 1.282 16 H -0.299 1.299 17 H -0.231 1.231 18 C -0.063 4.063 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.152 4.152 24 C 0.510 3.490 25 O -0.571 6.571 26 N -0.614 5.614 27 C 0.081 3.919 28 C 0.061 3.939 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.411 0.589 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.258 0.742 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 -11.803 10.728 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.113 0.887 4 N -0.374 5.374 5 C 0.306 3.694 6 O -0.428 6.428 7 C -0.154 4.154 8 C 0.040 3.960 9 H 0.056 0.944 10 C -0.504 4.504 11 H 0.048 0.952 12 C -0.172 4.172 13 N -0.595 5.595 14 Si 0.752 3.248 15 H -0.208 1.208 16 H -0.226 1.226 17 H -0.154 1.154 18 C -0.064 4.064 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.158 4.158 22 C -0.141 4.141 23 C -0.170 4.170 24 C 0.298 3.702 25 O -0.451 6.451 26 N -0.347 5.347 27 C -0.060 4.060 28 C -0.080 4.080 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.248 0.752 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.320 -11.283 10.637 18.627 hybrid contribution 0.057 0.686 -0.061 0.691 sum -10.263 -10.597 10.576 18.152 Atomic orbital electron populations 1.22329 0.91065 1.03712 1.04647 1.20744 0.97159 0.97179 0.83405 0.88715 1.45808 1.68770 1.14719 1.08151 1.20970 0.76457 0.87004 0.84981 1.90706 1.49548 1.17170 1.85356 1.21607 1.02693 0.98853 0.92210 1.17993 0.96360 0.92527 0.89163 0.94445 1.20777 1.03508 0.92761 1.33373 0.95184 1.25627 0.98939 0.96646 0.96025 1.70053 1.34785 1.03970 1.50726 0.86080 0.81849 0.78379 0.78483 1.20808 1.22606 1.15443 1.20492 0.94391 0.94443 0.97038 1.21005 0.95959 0.98211 0.98742 1.21386 1.00284 0.99383 0.93373 1.21338 0.93973 1.01129 0.99358 1.21348 0.97729 0.97720 0.97350 1.21268 0.99700 1.01291 0.94732 1.20744 0.79718 0.84129 0.85619 1.90659 1.39451 1.28128 1.86867 1.47782 1.51361 1.30127 1.05388 1.21823 1.00465 0.97554 0.86189 1.22355 0.95195 0.85878 1.04589 0.91184 0.87533 0.92395 0.75188 0.89202 0.87634 0.93284 0.87587 0.84464 0.83556 0.84073 0.87020 0.92516 0.87554 0.91928 0.89417 0.88277 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.12 71.98 0.66 -2.79 16 2 C 0.12 3.49 2.18 44.24 0.10 3.59 16 3 H 0.10 3.05 6.84 -2.39 -0.02 3.03 16 4 N -0.72 -23.38 4.95 -446.08 -2.21 -25.59 16 5 C 0.52 21.00 7.54 87.66 0.66 21.66 16 6 O -0.55 -27.38 14.66 -3.05 -0.04 -27.42 16 7 C -0.11 -4.38 4.94 29.85 0.15 -4.23 16 8 C 0.06 2.75 1.28 -12.29 -0.02 2.73 16 9 H 0.04 1.82 4.79 -2.38 -0.01 1.81 16 10 C -0.47 -26.93 6.94 25.60 0.18 -26.75 16 11 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 12 C 0.02 1.45 5.47 84.65 0.46 1.92 16 13 N -0.95 -62.79 13.96 21.45 0.30 -62.49 16 14 Si 0.93 48.14 27.04 68.60 1.85 49.99 16 15 H -0.28 -14.93 7.11 99.48 0.71 -14.23 16 16 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 17 H -0.23 -10.75 5.15 99.48 0.51 -10.24 16 18 C -0.06 -2.65 4.77 -19.87 -0.09 -2.74 16 19 C -0.12 -4.75 8.87 22.27 0.20 -4.56 16 20 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16 21 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 22 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 23 C -0.15 -5.72 9.13 22.27 0.20 -5.51 16 24 C 0.51 13.65 7.14 87.66 0.63 14.28 16 25 O -0.57 -18.94 15.42 -3.03 -0.05 -18.99 16 26 N -0.61 -11.51 3.27 -871.90 -2.85 -14.36 16 27 C 0.08 1.19 10.44 127.77 1.33 2.53 16 28 C 0.06 0.71 8.80 127.77 1.12 1.83 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 1.58 4.53 -2.39 -0.01 1.56 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 12.08 7.79 -92.71 -0.72 11.36 16 33 H 0.09 3.38 7.80 -2.39 -0.02 3.36 16 34 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 35 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 36 H 0.11 4.33 7.77 -2.91 -0.02 4.30 16 37 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.11 4.12 6.96 -2.91 -0.02 4.10 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.11 0.79 8.07 -2.39 -0.02 0.77 16 43 H 0.06 1.13 7.42 -2.39 -0.02 1.11 16 44 H 0.09 0.64 6.95 -2.39 -0.02 0.63 16 45 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 46 H 0.07 1.01 6.01 -2.38 -0.01 0.99 16 Total: -1.00 -82.69 371.53 3.32 -79.37 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.07 Total: 28.80 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 6.25 Total: -9.31 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -4.76 Total: -102.45 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.09 Total: -46.41 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.85 Total: 49.99 kcal Total: -82.69 3.32 -79.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356102454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.629 kcal (2) G-P(sol) polarization free energy of solvation -82.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds