Wall clock time and date at job start Tue Mar 31 2020 12:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46948 * 2 1 4 4 N 1.46501 * 109.47159 * 240.00105 * 2 1 3 5 5 C 1.34771 * 119.99954 * 85.27420 * 4 2 1 6 6 O 1.21284 * 120.00088 * 359.72497 * 5 4 2 7 7 C 1.50700 * 120.00052 * 179.72392 * 5 4 2 8 8 C 1.52999 * 109.47123 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47148 * 54.99952 * 8 7 5 10 10 C 1.50699 * 109.47348 * 294.99894 * 8 7 5 11 11 H 1.08001 * 120.00176 * 325.13220 * 10 8 7 12 12 C 1.37878 * 120.00129 * 145.12786 * 10 8 7 13 13 N 1.31510 * 119.99812 * 184.99385 * 12 10 8 14 14 Si 1.86804 * 119.99881 * 4.98903 * 12 10 8 15 15 H 1.48497 * 109.46990 * 84.72851 * 14 12 10 16 16 H 1.48494 * 109.46845 * 204.73066 * 14 12 10 17 17 H 1.48493 * 109.47002 * 324.73078 * 14 12 10 18 18 C 1.50703 * 109.47004 * 174.99919 * 8 7 5 19 19 C 1.38246 * 119.99828 * 64.69478 * 18 8 7 20 20 C 1.38235 * 119.99724 * 179.78900 * 19 18 8 21 21 C 1.38236 * 119.99985 * 0.43937 * 20 19 18 22 22 C 1.38238 * 119.99881 * 359.81171 * 21 20 19 23 23 C 1.38229 * 120.00270 * 244.96403 * 18 8 7 24 24 C 1.50695 * 109.47056 * 119.99902 * 2 1 3 25 25 O 1.21285 * 120.00261 * 119.99793 * 24 2 1 26 26 N 1.34782 * 120.00334 * 300.00544 * 24 2 1 27 27 C 1.46496 * 120.00027 * 180.02562 * 26 24 2 28 28 C 1.46505 * 119.99786 * 359.97438 * 26 24 2 29 29 H 1.08998 * 109.47151 * 299.99901 * 1 2 3 30 30 H 1.09007 * 109.47244 * 59.99788 * 1 2 3 31 31 H 1.09005 * 109.47373 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99683 * 264.99900 * 4 2 1 33 33 H 1.09001 * 109.46940 * 300.00351 * 7 5 4 34 34 H 1.09004 * 109.47032 * 60.00077 * 7 5 4 35 35 H 0.97010 * 119.99770 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.99588 * 359.97438 * 19 18 8 37 37 H 1.07993 * 119.99577 * 180.27264 * 20 19 18 38 38 H 1.07995 * 119.99870 * 179.83979 * 21 20 19 39 39 H 1.08007 * 119.99700 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.99978 * 359.97438 * 23 18 8 41 41 H 1.09001 * 109.47421 * 89.99360 * 27 26 24 42 42 H 1.09003 * 109.46536 * 209.99525 * 27 26 24 43 43 H 1.08998 * 109.47199 * 329.99112 * 27 26 24 44 44 H 1.09002 * 109.46798 * 90.00122 * 28 26 24 45 45 H 1.08997 * 109.47063 * 210.00348 * 28 26 24 46 46 H 1.08997 * 109.47280 * 330.01048 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1523 -0.0169 -2.3557 6 8 1.8639 1.1599 -2.4102 7 6 2.6606 -0.7257 -3.5846 8 6 2.7179 0.2589 -4.7543 9 1 3.3181 1.1239 -4.4720 10 6 1.3219 0.7079 -5.1018 11 1 0.4948 0.0194 -5.0111 12 6 1.1006 1.9979 -5.5355 13 7 -0.1274 2.4197 -5.7446 14 14 2.5449 3.1464 -5.8259 15 1 3.0861 2.9257 -7.1910 16 1 2.0918 4.5544 -5.6946 17 1 3.6050 2.8719 -4.8229 18 6 3.3404 -0.4162 -5.9492 19 6 2.7014 -1.4847 -6.5502 20 6 3.2704 -2.1012 -7.6489 21 6 4.4827 -1.6550 -8.1411 22 6 5.1241 -0.5899 -7.5369 23 6 4.5531 0.0293 -6.4409 24 6 2.0323 -0.7104 1.2304 25 8 2.7296 -1.6965 1.1192 26 7 1.7067 -0.2500 2.4546 27 6 2.1955 -0.9403 3.6507 28 6 0.8647 0.9414 2.5890 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 3.6590 -1.1179 -3.3910 34 1 1.9893 -1.5477 -3.8337 35 1 -0.2831 3.3274 -6.0494 36 1 1.7563 -1.8358 -6.1631 37 1 2.7691 -2.9330 -8.1211 38 1 4.9284 -2.1383 -8.9978 39 1 6.0711 -0.2411 -7.9217 40 1 5.0542 0.8615 -5.9689 41 1 3.1556 -0.5179 3.9472 42 1 1.4775 -0.8151 4.4613 43 1 2.3169 -2.0015 3.4336 44 1 -0.1833 0.6438 2.6221 45 1 1.1226 1.4666 3.5087 46 1 1.0285 1.6002 1.7362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356102495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:00 Heat of formation + Delta-G solvation = -37.287060 kcal Electronic energy + Delta-G solvation = -26925.786921 eV Core-core repulsion = 23201.824401 eV Total energy + Delta-G solvation = -3723.962519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43396 -39.00504 -38.25706 -35.85617 -34.86304 -33.89058 -31.70649 -30.92434 -30.18795 -28.84771 -27.93771 -26.70956 -25.88242 -23.61832 -22.46957 -21.82621 -20.24371 -19.62929 -19.14694 -17.28517 -16.92822 -16.77417 -16.20929 -15.99619 -15.54189 -15.07191 -14.62941 -14.49349 -14.20832 -13.80710 -13.75450 -13.56632 -13.17466 -13.04062 -12.77193 -12.70290 -12.52904 -12.39960 -12.39454 -12.26902 -12.01434 -11.84596 -11.60588 -11.45729 -11.09010 -10.77698 -10.48638 -10.35252 -9.88989 -9.83725 -9.58830 -9.06822 -9.00166 -8.95971 -8.64970 -8.40828 -8.21083 -7.79818 -5.96281 -3.92497 2.10457 2.16060 2.42356 2.67323 3.43095 3.47158 3.47984 3.48840 3.68681 4.29230 4.53528 4.58806 4.78630 4.98715 5.01870 5.14197 5.17194 5.29618 5.32780 5.40415 5.52497 5.53108 5.56481 5.58337 5.70007 5.76061 5.91224 5.98410 6.05702 6.11639 6.16053 6.26026 6.30262 6.35631 6.63889 6.71540 6.78072 6.85093 7.05623 7.08608 7.15426 7.27936 7.60618 7.74776 7.84684 7.91212 8.07769 8.55585 9.00296 9.03644 9.68632 11.16911 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015143 B = 0.003650 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.573602 B = 7669.290022 C = 8742.253326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 H 0.110 0.890 4 N -0.732 5.732 5 C 0.519 3.481 6 O -0.500 6.500 7 C -0.114 4.114 8 C 0.046 3.954 9 H 0.058 0.942 10 C -0.484 4.484 11 H 0.071 0.929 12 C 0.087 3.913 13 N -0.899 5.899 14 Si 0.870 3.130 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.261 1.261 18 C -0.039 4.039 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.124 4.124 23 C -0.140 4.140 24 C 0.513 3.487 25 O -0.536 6.536 26 N -0.621 5.621 27 C 0.086 3.914 28 C 0.071 3.929 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -6.543 13.911 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.022 3.978 3 H 0.128 0.872 4 N -0.389 5.389 5 C 0.306 3.694 6 O -0.372 6.372 7 C -0.154 4.154 8 C 0.027 3.973 9 H 0.076 0.924 10 C -0.521 4.521 11 H 0.089 0.911 12 C -0.115 4.115 13 N -0.537 5.537 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.219 1.219 17 H -0.187 1.187 18 C -0.040 4.040 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.168 4.168 22 C -0.143 4.143 23 C -0.159 4.159 24 C 0.300 3.700 25 O -0.412 6.412 26 N -0.355 5.355 27 C -0.057 4.057 28 C -0.072 4.072 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.201 -6.009 13.739 15.574 hybrid contribution 0.667 0.392 -0.166 0.791 sum 4.869 -5.617 13.573 15.476 Atomic orbital electron populations 1.22400 0.93161 1.03064 1.04328 1.20560 0.95642 0.97938 0.83654 0.87195 1.45974 1.70022 1.14428 1.08472 1.20845 0.77279 0.87747 0.83550 1.90734 1.46916 1.15831 1.83706 1.21629 1.00319 1.00018 0.93449 1.18315 0.98307 0.93531 0.87184 0.92412 1.20589 0.90135 0.97391 1.43938 0.91066 1.24846 0.95003 0.97514 0.94133 1.69887 1.19580 1.17620 1.46582 0.86977 0.84136 0.80273 0.78785 1.20269 1.21859 1.18660 1.20789 0.91651 0.93047 0.98512 1.20982 0.99324 0.96013 0.95623 1.21065 0.95931 1.00204 0.97235 1.20863 0.96637 0.98610 1.00681 1.20961 0.99619 0.96907 0.96769 1.21079 0.96298 1.00641 0.97850 1.20941 0.79727 0.84499 0.84796 1.90673 1.37789 1.26448 1.86306 1.47670 1.52110 1.29744 1.06020 1.21640 0.99135 0.98636 0.86293 1.22090 0.94593 0.86938 1.03533 0.90861 0.89816 0.92204 0.76178 0.91201 0.89698 0.92910 0.86164 0.87150 0.87398 0.87340 0.87302 0.92730 0.91175 0.90480 0.91695 0.90899 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.12 37.16 0.34 -1.83 16 2 C 0.13 1.85 2.18 -69.08 -0.15 1.70 16 3 H 0.11 1.63 6.83 -51.93 -0.35 1.27 16 4 N -0.73 -11.82 4.95 -54.93 -0.27 -12.09 16 5 C 0.52 10.33 7.55 -10.99 -0.08 10.24 16 6 O -0.50 -12.04 14.64 5.55 0.08 -11.96 16 7 C -0.11 -2.18 4.96 -27.88 -0.14 -2.32 16 8 C 0.05 1.06 1.21 -92.92 -0.11 0.94 16 9 H 0.06 1.43 4.70 -51.93 -0.24 1.19 16 10 C -0.48 -13.20 6.87 -34.44 -0.24 -13.44 16 11 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 12 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 13 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 14 Si 0.87 22.71 27.15 -169.99 -4.62 18.10 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 17 H -0.26 -6.60 6.06 56.52 0.34 -6.26 16 18 C -0.04 -0.83 4.55 -104.62 -0.48 -1.31 16 19 C -0.10 -1.99 8.87 -39.58 -0.35 -2.34 16 20 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 21 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 22 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 23 C -0.14 -2.79 9.43 -39.59 -0.37 -3.16 16 24 C 0.51 6.83 7.14 -10.99 -0.08 6.75 16 25 O -0.54 -8.61 15.42 5.55 0.09 -8.53 16 26 N -0.62 -6.20 3.27 -189.52 -0.62 -6.82 16 27 C 0.09 0.69 10.44 59.84 0.62 1.31 16 28 C 0.07 0.50 8.80 59.85 0.53 1.03 16 29 H 0.07 0.70 4.53 -51.93 -0.24 0.47 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.40 5.95 7.79 -40.82 -0.32 5.64 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.52 7.86 -51.93 -0.41 1.11 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.12 2.32 7.80 -52.49 -0.41 1.92 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.11 2.10 7.95 -52.49 -0.42 1.68 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.37 8.07 -51.93 -0.42 -0.04 16 43 H 0.08 0.72 7.42 -51.93 -0.39 0.33 16 44 H 0.06 0.38 6.95 -51.93 -0.36 0.02 16 45 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 46 H 0.08 0.62 6.01 -51.93 -0.31 0.30 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -35.18 373.50 -7.60 -42.78 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.86 Total: 7.95 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.80 Total: -7.99 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.12 Total: -45.99 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.17 Total: -20.48 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.62 Total: 18.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.18 -7.60 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356102495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.496 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds