Wall clock time and date at job start Tue Mar 31 2020 12:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46948 * 2 1 4 4 N 1.46501 * 109.47159 * 240.00105 * 2 1 3 5 5 C 1.34771 * 119.99954 * 85.27420 * 4 2 1 6 6 O 1.21284 * 120.00088 * 359.72497 * 5 4 2 7 7 C 1.50700 * 120.00052 * 179.72392 * 5 4 2 8 8 C 1.52999 * 109.47123 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47148 * 54.99952 * 8 7 5 10 10 C 1.50699 * 109.47348 * 294.99894 * 8 7 5 11 11 H 1.08001 * 120.00176 * 325.13220 * 10 8 7 12 12 C 1.37878 * 120.00129 * 145.12786 * 10 8 7 13 13 N 1.31510 * 119.99812 * 184.99385 * 12 10 8 14 14 Si 1.86804 * 119.99881 * 4.98903 * 12 10 8 15 15 H 1.48497 * 109.46990 * 84.72851 * 14 12 10 16 16 H 1.48494 * 109.46845 * 204.73066 * 14 12 10 17 17 H 1.48493 * 109.47002 * 324.73078 * 14 12 10 18 18 C 1.50703 * 109.47004 * 174.99919 * 8 7 5 19 19 C 1.38246 * 119.99828 * 64.69478 * 18 8 7 20 20 C 1.38235 * 119.99724 * 179.78900 * 19 18 8 21 21 C 1.38236 * 119.99985 * 0.43937 * 20 19 18 22 22 C 1.38238 * 119.99881 * 359.81171 * 21 20 19 23 23 C 1.38229 * 120.00270 * 244.96403 * 18 8 7 24 24 C 1.50695 * 109.47056 * 119.99902 * 2 1 3 25 25 O 1.21285 * 120.00261 * 119.99793 * 24 2 1 26 26 N 1.34782 * 120.00334 * 300.00544 * 24 2 1 27 27 C 1.46496 * 120.00027 * 180.02562 * 26 24 2 28 28 C 1.46505 * 119.99786 * 359.97438 * 26 24 2 29 29 H 1.08998 * 109.47151 * 299.99901 * 1 2 3 30 30 H 1.09007 * 109.47244 * 59.99788 * 1 2 3 31 31 H 1.09005 * 109.47373 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99683 * 264.99900 * 4 2 1 33 33 H 1.09001 * 109.46940 * 300.00351 * 7 5 4 34 34 H 1.09004 * 109.47032 * 60.00077 * 7 5 4 35 35 H 0.97010 * 119.99770 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.99588 * 359.97438 * 19 18 8 37 37 H 1.07993 * 119.99577 * 180.27264 * 20 19 18 38 38 H 1.07995 * 119.99870 * 179.83979 * 21 20 19 39 39 H 1.08007 * 119.99700 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.99978 * 359.97438 * 23 18 8 41 41 H 1.09001 * 109.47421 * 89.99360 * 27 26 24 42 42 H 1.09003 * 109.46536 * 209.99525 * 27 26 24 43 43 H 1.08998 * 109.47199 * 329.99112 * 27 26 24 44 44 H 1.09002 * 109.46798 * 90.00122 * 28 26 24 45 45 H 1.08997 * 109.47063 * 210.00348 * 28 26 24 46 46 H 1.08997 * 109.47280 * 330.01048 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1523 -0.0169 -2.3557 6 8 1.8639 1.1599 -2.4102 7 6 2.6606 -0.7257 -3.5846 8 6 2.7179 0.2589 -4.7543 9 1 3.3181 1.1239 -4.4720 10 6 1.3219 0.7079 -5.1018 11 1 0.4948 0.0194 -5.0111 12 6 1.1006 1.9979 -5.5355 13 7 -0.1274 2.4197 -5.7446 14 14 2.5449 3.1464 -5.8259 15 1 3.0861 2.9257 -7.1910 16 1 2.0918 4.5544 -5.6946 17 1 3.6050 2.8719 -4.8229 18 6 3.3404 -0.4162 -5.9492 19 6 2.7014 -1.4847 -6.5502 20 6 3.2704 -2.1012 -7.6489 21 6 4.4827 -1.6550 -8.1411 22 6 5.1241 -0.5899 -7.5369 23 6 4.5531 0.0293 -6.4409 24 6 2.0323 -0.7104 1.2304 25 8 2.7296 -1.6965 1.1192 26 7 1.7067 -0.2500 2.4546 27 6 2.1955 -0.9403 3.6507 28 6 0.8647 0.9414 2.5890 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 3.6590 -1.1179 -3.3910 34 1 1.9893 -1.5477 -3.8337 35 1 -0.2831 3.3274 -6.0494 36 1 1.7563 -1.8358 -6.1631 37 1 2.7691 -2.9330 -8.1211 38 1 4.9284 -2.1383 -8.9978 39 1 6.0711 -0.2411 -7.9217 40 1 5.0542 0.8615 -5.9689 41 1 3.1556 -0.5179 3.9472 42 1 1.4775 -0.8151 4.4613 43 1 2.3169 -2.0015 3.4336 44 1 -0.1833 0.6438 2.6221 45 1 1.1226 1.4666 3.5087 46 1 1.0285 1.6002 1.7362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356102495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:59 Heat of formation + Delta-G solvation = -61.419012 kcal Electronic energy + Delta-G solvation = -26926.833361 eV Core-core repulsion = 23201.824401 eV Total energy + Delta-G solvation = -3725.008959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56983 -40.47938 -39.70750 -36.76892 -36.30297 -35.58801 -33.73672 -32.22540 -31.60167 -30.25450 -28.72201 -27.76477 -27.52720 -24.94479 -23.95508 -23.26375 -21.68837 -20.95988 -20.47421 -19.01939 -18.56517 -17.86205 -17.55283 -17.00948 -16.79916 -16.49146 -16.21991 -15.84120 -15.69686 -15.38979 -14.98237 -14.79856 -14.61281 -14.31818 -14.13472 -13.91078 -13.82804 -13.74190 -13.58564 -13.35203 -13.29800 -13.08456 -12.94743 -12.78472 -12.66080 -12.42688 -12.05099 -11.88487 -11.80627 -11.47302 -11.01122 -10.98888 -10.76085 -10.50716 -10.09506 -9.75604 -9.63570 -9.31147 -8.19969 -6.15844 0.67188 0.72428 1.31707 1.34194 1.37946 1.40465 1.73573 1.90411 2.41105 2.42625 3.08245 3.23316 3.31321 3.93877 4.03592 4.10924 4.14776 4.22532 4.30612 4.31143 4.40577 4.44390 4.46346 4.49029 4.57881 4.63743 4.72287 4.78589 4.84091 4.86815 4.89639 4.91552 5.07575 5.19019 5.20730 5.37414 5.38821 5.40874 5.49429 5.70666 5.75800 5.82100 6.02650 6.15939 6.33371 6.37483 6.64929 6.82173 6.93406 7.46579 7.47799 8.97185 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015143 B = 0.003650 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.573602 B = 7669.290022 C = 8742.253326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.102 0.898 4 N -0.719 5.719 5 C 0.517 3.483 6 O -0.550 6.550 7 C -0.112 4.112 8 C 0.049 3.951 9 H 0.039 0.961 10 C -0.462 4.462 11 H 0.036 0.964 12 C 0.029 3.971 13 N -0.950 5.950 14 Si 0.919 3.081 15 H -0.268 1.268 16 H -0.297 1.297 17 H -0.252 1.252 18 C -0.064 4.064 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.158 4.158 24 C 0.513 3.487 25 O -0.569 6.569 26 N -0.613 5.613 27 C 0.082 3.918 28 C 0.061 3.939 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 -7.860 14.446 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.120 0.880 4 N -0.375 5.375 5 C 0.305 3.695 6 O -0.426 6.426 7 C -0.152 4.152 8 C 0.030 3.970 9 H 0.057 0.943 10 C -0.499 4.499 11 H 0.055 0.945 12 C -0.168 4.168 13 N -0.592 5.592 14 Si 0.746 3.254 15 H -0.193 1.193 16 H -0.224 1.224 17 H -0.177 1.177 18 C -0.065 4.065 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.158 4.158 22 C -0.141 4.141 23 C -0.176 4.176 24 C 0.300 3.700 25 O -0.449 6.449 26 N -0.346 5.346 27 C -0.060 4.060 28 C -0.080 4.080 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.062 -7.359 14.335 17.216 hybrid contribution 0.109 0.660 -0.253 0.715 sum 6.170 -6.699 14.082 16.770 Atomic orbital electron populations 1.22328 0.92045 1.03341 1.04288 1.20698 0.96504 0.97474 0.83513 0.88029 1.45804 1.68711 1.14688 1.08299 1.20975 0.76726 0.87182 0.84619 1.90713 1.49431 1.17834 1.84635 1.21577 1.02299 0.99285 0.91996 1.18156 0.95275 0.94078 0.89511 0.94320 1.20765 0.91593 0.96266 1.41306 0.94544 1.25525 0.96856 0.99340 0.95066 1.70023 1.21497 1.17935 1.49713 0.86181 0.81857 0.78205 0.79188 1.19305 1.22382 1.17678 1.20532 0.93174 0.94595 0.98191 1.21035 0.99322 0.96389 0.96997 1.21416 0.96282 1.00462 0.96054 1.21347 0.95816 0.97678 1.00989 1.21344 1.00666 0.96577 0.95545 1.21218 0.96199 1.01138 0.99064 1.20661 0.79712 0.84101 0.85487 1.90657 1.39530 1.27881 1.86843 1.47776 1.51308 1.30098 1.05395 1.21829 1.00540 0.97545 0.86093 1.22348 0.95079 0.85914 1.04704 0.87398 0.93335 0.91700 0.75197 0.88233 0.88647 0.93281 0.87108 0.84206 0.83496 0.84154 0.87420 0.92120 0.87767 0.91992 0.89936 0.88008 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.12 71.98 0.66 -3.47 16 2 C 0.13 3.61 2.18 44.24 0.10 3.71 16 3 H 0.10 3.10 6.83 -2.39 -0.02 3.08 16 4 N -0.72 -23.67 4.95 -446.10 -2.21 -25.87 16 5 C 0.52 21.24 7.55 87.66 0.66 21.90 16 6 O -0.55 -27.72 14.64 -3.04 -0.04 -27.76 16 7 C -0.11 -4.34 4.96 29.85 0.15 -4.19 16 8 C 0.05 2.31 1.21 -12.29 -0.01 2.29 16 9 H 0.04 1.96 4.70 -2.39 -0.01 1.94 16 10 C -0.46 -26.30 6.87 25.60 0.18 -26.12 16 11 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 12 C 0.03 1.74 5.47 84.66 0.46 2.20 16 13 N -0.95 -61.75 13.96 21.45 0.30 -61.45 16 14 Si 0.92 48.19 27.15 68.60 1.86 50.05 16 15 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 16 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 17 H -0.25 -12.69 6.06 99.48 0.60 -12.08 16 18 C -0.06 -2.70 4.55 -19.86 -0.09 -2.79 16 19 C -0.12 -4.60 8.87 22.27 0.20 -4.40 16 20 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 21 C -0.14 -4.03 10.05 22.27 0.22 -3.81 16 22 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 23 C -0.16 -6.02 9.43 22.27 0.21 -5.81 16 24 C 0.51 13.31 7.14 87.65 0.63 13.94 16 25 O -0.57 -18.12 15.42 -3.05 -0.05 -18.17 16 26 N -0.61 -11.06 3.27 -871.88 -2.85 -13.92 16 27 C 0.08 1.12 10.44 127.77 1.33 2.45 16 28 C 0.06 0.70 8.80 127.77 1.12 1.82 16 29 H 0.11 1.93 4.53 -2.39 -0.01 1.92 16 30 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.41 12.19 7.79 -92.71 -0.72 11.47 16 33 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.10 3.48 7.86 -2.38 -0.02 3.46 16 35 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 36 H 0.11 4.36 7.80 -2.91 -0.02 4.34 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 40 H 0.11 4.03 7.95 -2.91 -0.02 4.01 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 43 H 0.06 1.07 7.42 -2.39 -0.02 1.05 16 44 H 0.08 0.71 6.95 -2.39 -0.02 0.69 16 45 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 46 H 0.07 1.00 6.01 -2.39 -0.01 0.99 16 Total: -1.00 -80.98 373.50 3.43 -77.55 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.16 Total: 29.18 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 6.26 Total: -9.60 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -4.76 Total: -101.24 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.09 Total: -45.93 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.86 Total: 50.05 kcal Total: -80.98 3.43 -77.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356102495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.129 kcal (2) G-P(sol) polarization free energy of solvation -80.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds