Wall clock time and date at job start Tue Mar 31 2020 13:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47130 * 2 1 4 4 C 1.46509 * 120.00263 * 270.00491 * 3 2 1 5 5 C 1.34783 * 119.99884 * 90.00170 * 3 2 1 6 6 O 1.21271 * 119.99607 * 0.02562 * 5 3 2 7 7 C 1.50703 * 119.99638 * 179.97438 * 5 3 2 8 8 N 1.46506 * 109.46523 * 180.02562 * 7 5 3 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08997 * 109.47565 * 59.99524 * 1 2 3 29 29 H 1.09001 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46724 * 299.99641 * 1 2 3 31 31 H 1.09004 * 109.47074 * 240.00597 * 2 1 3 32 32 H 1.08997 * 109.47565 * 120.00476 * 2 1 3 33 33 H 1.09001 * 109.46783 * 270.00112 * 4 3 2 34 34 H 1.09001 * 109.46717 * 29.99867 * 4 3 2 35 35 H 1.08991 * 109.46968 * 149.99932 * 4 3 2 36 36 H 1.08999 * 109.47241 * 60.00948 * 7 5 3 37 37 H 1.08992 * 109.47528 * 299.99979 * 7 5 3 38 38 H 0.97001 * 120.00254 * 0.02562 * 8 7 5 39 39 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 40 40 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 41 41 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 42 42 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 43 43 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 44 44 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 45 45 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 2.2430 2.0165 1.1673 6 8 2.0413 1.4446 2.2174 7 6 2.7459 3.4372 1.1672 8 7 2.9092 3.8973 2.5485 9 6 3.3519 5.1462 2.7948 10 8 3.6147 5.8893 1.8730 11 6 3.5193 5.6198 4.2156 12 6 4.0300 7.0620 4.2156 13 1 3.3672 7.6822 3.6123 14 6 5.4207 7.1024 3.6368 15 1 6.0758 6.2506 3.7452 16 6 5.8569 8.2269 2.9686 17 7 5.1110 9.3098 2.9471 18 14 7.5076 8.2122 2.0941 19 1 7.7419 9.5329 1.4569 20 1 8.5862 7.9379 3.0772 21 1 7.5064 7.1538 1.0524 22 6 4.0587 7.5848 5.6288 23 6 4.9030 7.0110 6.5610 24 6 4.9322 7.4929 7.8562 25 6 4.1111 8.5434 8.2215 26 6 3.2631 9.1137 7.2906 27 6 3.2367 8.6343 5.9944 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.2919 1.9006 -1.5835 34 1 1.5816 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 2.0282 4.0766 0.6533 37 1 3.7061 3.4827 0.6536 38 1 2.6993 3.3029 3.2858 39 1 4.2365 4.9800 4.7297 40 1 2.5588 5.5748 4.7291 41 1 4.2221 9.2941 3.3348 42 1 5.5417 6.1878 6.2766 43 1 5.5946 7.0471 8.5835 44 1 4.1321 8.9182 9.2342 45 1 2.6214 9.9341 7.5762 46 1 2.5744 9.0802 5.2672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356814837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:20 Heat of formation + Delta-G solvation = -51.971764 kcal Electronic energy + Delta-G solvation = -26380.057065 eV Core-core repulsion = 22655.457769 eV Total energy + Delta-G solvation = -3724.599296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31895 -38.99746 -38.19384 -36.17565 -34.49432 -33.81470 -31.77210 -31.28343 -30.08443 -29.24854 -27.57708 -26.88558 -24.85131 -23.36065 -22.66896 -21.64427 -20.27090 -19.72873 -19.33138 -17.42307 -16.90248 -16.63427 -16.22003 -16.07698 -15.54782 -15.12343 -14.82819 -14.28717 -14.05831 -13.99480 -13.64803 -13.62627 -13.42768 -13.00993 -12.96301 -12.79491 -12.61344 -12.43867 -12.28986 -12.24426 -12.09734 -11.82007 -11.42882 -11.36123 -10.90402 -10.69463 -10.40573 -10.14582 -10.04631 -10.02006 -9.63177 -9.09374 -9.03948 -8.71612 -8.59138 -8.24928 -8.11187 -7.61010 -6.21555 -3.88903 2.21900 2.27347 2.36020 2.60150 3.44351 3.51071 3.55893 3.68540 3.71703 4.26067 4.62683 4.69346 4.74153 4.76911 4.86027 5.07829 5.13188 5.29511 5.36669 5.40567 5.43277 5.49121 5.59405 5.62187 5.66076 5.75986 5.79573 5.86246 6.04079 6.12138 6.17787 6.20415 6.34482 6.45272 6.67746 6.74016 6.81727 6.95807 7.04090 7.22602 7.25207 7.40788 7.74584 7.85536 7.88567 8.03681 8.25202 8.52848 8.96416 9.00660 9.80371 11.18829 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.003266 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.640590 B = 8570.355237 C =10005.070045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.618 5.618 4 C 0.072 3.928 5 C 0.511 3.489 6 O -0.536 6.536 7 C 0.105 3.895 8 N -0.739 5.739 9 C 0.517 3.483 10 O -0.501 6.501 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.051 0.949 14 C -0.568 4.568 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.063 2.937 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.289 1.289 22 C -0.031 4.031 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.404 0.596 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.270 0.730 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 -15.082 -3.787 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.352 5.352 4 C -0.071 4.071 5 C 0.300 3.700 6 O -0.412 6.412 7 C -0.022 4.022 8 N -0.398 5.398 9 C 0.304 3.696 10 O -0.373 6.373 11 C -0.156 4.156 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.606 4.606 15 H 0.064 0.936 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.892 3.108 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.216 1.216 22 C -0.031 4.031 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.241 0.759 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.705 -13.852 -4.786 16.117 hybrid contribution -1.059 -1.246 1.024 1.929 sum -7.764 -15.098 -3.763 17.390 Atomic orbital electron populations 1.22131 0.95786 1.02258 1.02453 1.21441 0.94492 0.81992 1.03252 1.47858 1.66489 1.14534 1.06364 1.21913 1.01788 0.98266 0.85083 1.20786 0.77062 0.88740 0.83452 1.90672 1.51991 1.67652 1.30930 1.20962 1.02670 0.91155 0.87462 1.45993 1.71032 1.16185 1.06603 1.20895 0.75785 0.80035 0.92883 1.90743 1.46484 1.54015 1.46037 1.21680 1.01018 1.01094 0.91814 1.17868 0.98843 0.89484 0.88470 0.93050 1.21539 0.97980 1.03698 1.37358 0.93648 1.25575 1.04484 0.92168 0.95094 1.70756 1.10786 1.27963 1.44640 0.83640 0.74871 0.75867 0.76396 1.20968 1.21770 1.21570 1.20813 0.91669 0.93894 0.96768 1.20924 0.98683 1.00617 0.92372 1.21013 0.99489 0.97695 0.96557 1.20824 0.99005 0.98566 0.98723 1.20960 0.99566 0.99727 0.94019 1.21062 1.00101 0.98127 0.95519 0.92564 0.91542 0.92115 0.90463 0.89752 0.91962 0.90756 0.90308 0.88936 0.88755 0.75908 0.90093 0.91472 0.91864 0.86710 0.87448 0.87596 0.87473 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.11 0.89 6.13 -4.04 -0.02 0.86 16 3 N -0.62 -5.89 2.87 -181.57 -0.52 -6.41 16 4 C 0.07 0.48 10.24 59.85 0.61 1.10 16 5 C 0.51 6.50 7.74 -10.98 -0.09 6.41 16 6 O -0.54 -8.29 15.25 5.57 0.08 -8.20 16 7 C 0.11 1.44 4.71 -5.19 -0.02 1.41 16 8 N -0.74 -11.98 5.53 -61.47 -0.34 -12.32 16 9 C 0.52 10.48 7.58 -10.99 -0.08 10.40 16 10 O -0.50 -12.31 15.02 5.55 0.08 -12.23 16 11 C -0.12 -2.31 4.94 -27.88 -0.14 -2.45 16 12 C 0.07 1.75 1.31 -92.92 -0.12 1.63 16 13 H 0.05 1.39 6.23 -51.93 -0.32 1.06 16 14 C -0.57 -15.50 6.40 -34.44 -0.22 -15.72 16 15 H 0.05 1.24 7.82 -52.49 -0.41 0.83 16 16 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -27.60 13.63 55.43 0.76 -26.84 16 18 Si 1.06 26.19 29.91 -169.99 -5.08 21.10 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.03 -0.69 4.77 -104.62 -0.50 -1.19 16 23 C -0.11 -2.24 8.88 -39.59 -0.35 -2.59 16 24 C -0.13 -2.38 10.05 -39.58 -0.40 -2.77 16 25 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 26 C -0.12 -2.32 10.05 -39.59 -0.40 -2.72 16 27 C -0.13 -2.75 9.67 -39.59 -0.38 -3.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.80 7.42 -51.93 -0.39 0.42 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.08 0.53 6.44 -51.93 -0.33 0.20 16 36 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 37 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 38 H 0.40 6.09 7.44 -40.82 -0.30 5.79 16 39 H 0.08 1.53 7.87 -51.93 -0.41 1.12 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.27 8.14 6.68 -40.82 -0.27 7.86 16 42 H 0.11 2.33 7.80 -52.48 -0.41 1.92 16 43 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.11 2.29 7.95 -52.49 -0.42 1.88 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -34.92 383.91 -8.55 -43.47 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.09 Total: 7.53 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.23 Total: -11.89 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.11 Total: -45.58 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.17 Total: -20.43 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.08 Total: 21.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.92 -8.55 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356814837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.502 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds