Wall clock time and date at job start Tue Mar 31 2020 12:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.46975 * 2 1 4 4 C 1.46503 * 120.00165 * 263.51648 * 3 2 1 5 5 C 1.53001 * 109.47048 * 270.00141 * 4 3 2 6 6 C 1.52995 * 109.47417 * 174.99972 * 5 4 3 7 7 C 1.53004 * 109.47210 * 294.99814 * 5 4 3 8 8 C 1.34784 * 120.00072 * 83.51855 * 3 2 1 9 9 O 1.21357 * 119.99913 * 174.81604 * 8 3 2 10 10 C 1.49351 * 119.99663 * 354.80811 * 8 3 2 11 11 O 1.21380 * 120.00260 * 0.66681 * 10 8 3 12 12 N 1.34778 * 119.99888 * 180.65717 * 10 8 3 13 13 C 1.39738 * 120.00222 * 185.43093 * 12 10 8 14 14 C 1.39347 * 119.95100 * 29.83785 * 13 12 10 15 15 C 1.38478 * 120.41977 * 180.02562 * 14 13 12 16 16 C 1.37687 * 120.32735 * 0.27993 * 15 14 13 17 17 C 1.40745 * 119.90038 * 359.49731 * 16 15 14 18 18 C 1.41412 * 120.21226 * 180.24949 * 17 16 15 19 19 H 1.07993 * 120.00632 * 213.24575 * 18 17 16 20 20 C 1.39934 * 119.99586 * 33.24114 * 18 17 16 21 21 N 1.30827 * 120.00210 * 6.40647 * 20 18 17 22 22 Si 1.86797 * 120.00018 * 186.40626 * 20 18 17 23 23 H 1.48505 * 109.46953 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47464 * 119.99941 * 22 20 18 25 25 H 1.48506 * 109.47326 * 240.00126 * 22 20 18 26 26 C 1.38300 * 119.95563 * 209.86525 * 13 12 10 27 27 H 1.08999 * 109.47214 * 59.99958 * 1 2 3 28 28 H 1.09006 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47189 * 299.99689 * 1 2 3 30 30 H 1.09004 * 109.46978 * 239.99847 * 2 1 3 31 31 H 1.09003 * 109.47006 * 120.00512 * 2 1 3 32 32 H 1.08994 * 109.46884 * 29.99883 * 4 3 2 33 33 H 1.08999 * 109.47251 * 150.00646 * 4 3 2 34 34 H 1.08997 * 109.47173 * 54.99639 * 5 4 3 35 35 H 1.08997 * 109.47220 * 59.99696 * 6 5 4 36 36 H 1.08999 * 109.47477 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47085 * 300.00067 * 6 5 4 38 38 H 1.08997 * 109.47310 * 300.00347 * 7 5 4 39 39 H 1.09005 * 109.46877 * 60.00094 * 7 5 4 40 40 H 1.08998 * 109.47031 * 179.97438 * 7 5 4 41 41 H 0.97004 * 119.99597 * 5.42973 * 12 10 8 42 42 H 1.07994 * 119.78885 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.82915 * 180.02562 * 15 14 13 44 44 H 1.08007 * 120.04725 * 179.74214 * 16 15 14 45 45 H 0.97000 * 120.00238 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.16126 * 359.95577 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3975 2.0241 -1.2606 5 6 3.8809 1.7701 -1.5366 6 6 4.2478 2.3336 -2.9109 7 6 4.7247 2.4580 -0.4615 8 6 2.1187 2.0605 1.1598 9 8 2.6107 3.1698 1.1726 10 6 1.6243 1.4480 2.4291 11 8 1.1431 0.3337 2.4181 12 7 1.7126 2.1326 3.5867 13 6 1.3560 1.5188 4.7903 14 6 1.5101 0.1422 4.9417 15 6 1.1593 -0.4761 6.1301 16 6 0.6487 0.2625 7.1738 17 6 0.4917 1.6545 7.0375 18 6 -0.0272 2.4203 8.1071 19 1 -0.6341 3.2901 7.9039 20 6 0.2458 2.0509 9.4289 21 7 1.0810 1.0747 9.6761 22 14 -0.5824 2.9515 10.8404 23 1 -1.4751 4.0071 10.2981 24 1 -1.3819 1.9892 11.6404 25 1 0.4520 3.5746 11.7048 26 6 0.8501 2.2784 5.8295 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8007 1.6102 -2.0734 33 1 2.2199 3.0971 -1.1891 34 1 4.0751 0.6977 -1.5199 35 1 4.0535 3.4060 -2.9275 36 1 5.3046 2.1531 -3.1073 37 1 3.6467 1.8436 -3.6767 38 1 4.5305 3.5304 -0.4781 39 1 4.4634 2.0565 0.5176 40 1 5.7814 2.2767 -0.6579 41 1 2.0237 3.0514 3.5843 42 1 1.9056 -0.4462 4.1271 43 1 1.2831 -1.5437 6.2372 44 1 0.3727 -0.2250 8.0973 45 1 1.2700 0.8184 10.5924 46 1 0.7304 3.3455 5.7135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453605001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:29 Heat of formation + Delta-G solvation = -48.696671 kcal Electronic energy + Delta-G solvation = -26791.629399 eV Core-core repulsion = 23067.172122 eV Total energy + Delta-G solvation = -3724.457277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.94674 -39.02959 -37.24880 -36.86416 -35.11924 -34.20212 -33.03773 -30.47356 -29.86593 -28.66429 -27.33325 -27.07364 -25.28094 -24.23371 -23.09703 -21.28435 -20.88083 -20.11919 -19.27778 -17.82144 -17.47921 -16.91199 -16.06449 -15.59198 -15.46390 -15.04717 -14.80065 -14.76488 -14.43750 -14.33589 -13.56817 -13.41678 -13.17720 -12.99575 -12.92695 -12.59558 -12.37508 -12.28303 -12.11469 -12.02767 -11.83192 -11.53488 -11.36773 -11.18110 -11.15307 -11.08852 -10.91257 -10.86445 -10.63074 -10.53376 -10.09796 -9.79367 -9.33792 -9.14454 -8.93415 -8.83759 -7.46304 -6.94639 -6.68206 -4.41855 1.50202 2.44002 2.77686 2.83750 3.09234 3.14077 3.17880 3.51966 3.65971 3.96434 4.52517 4.62092 4.67448 4.69181 4.79309 4.98860 5.16329 5.29232 5.33138 5.45166 5.48335 5.59580 5.61517 5.67167 5.73320 5.74533 5.89378 5.94497 6.08250 6.19438 6.21914 6.28311 6.41055 6.45953 6.60769 6.80467 6.86890 7.00050 7.04731 7.23362 7.47641 7.50085 7.72805 7.94175 8.01503 8.05207 8.22000 8.39136 8.61332 8.88921 8.91326 10.27169 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.002674 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.992226 B =10470.184939 C =10889.924155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.585 5.585 4 C 0.118 3.882 5 C -0.112 4.112 6 C -0.144 4.144 7 C -0.140 4.140 8 C 0.508 3.492 9 O -0.519 6.519 10 C 0.494 3.506 11 O -0.496 6.496 12 N -0.631 5.631 13 C 0.142 3.858 14 C -0.217 4.217 15 C -0.100 4.100 16 C -0.151 4.151 17 C 0.122 3.878 18 C -0.467 4.467 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.808 5.808 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.232 4.232 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.412 0.588 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.278 0.722 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -0.453 -19.017 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.319 5.319 4 C -0.005 4.005 5 C -0.132 4.132 6 C -0.202 4.202 7 C -0.197 4.197 8 C 0.291 3.709 9 O -0.394 6.394 10 C 0.275 3.725 11 O -0.372 6.372 12 N -0.275 5.275 13 C 0.050 3.950 14 C -0.238 4.238 15 C -0.119 4.119 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.498 4.498 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.435 5.435 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.254 4.254 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.248 0.752 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.089 0.911 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.313 -0.772 -18.852 19.156 hybrid contribution -0.111 0.785 0.673 1.040 sum 3.202 0.013 -18.179 18.459 Atomic orbital electron populations 1.22113 0.95295 1.02504 1.01966 1.21983 0.95336 0.80859 1.03942 1.47857 1.63203 1.14935 1.05897 1.21693 0.94916 0.99312 0.84529 1.21531 0.95079 1.00686 0.95903 1.21767 1.01495 1.01219 0.95685 1.21830 0.98375 1.01168 0.98330 1.20280 0.79770 0.85718 0.85124 1.90741 1.42926 1.19564 1.86210 1.19983 0.81074 0.86639 0.84791 1.90708 1.42190 1.18683 1.85595 1.43214 1.62517 1.16724 1.05037 1.17479 1.00948 0.92774 0.83774 1.20423 1.12079 0.92621 0.98708 1.20619 0.99963 0.97852 0.93443 1.21448 1.03646 0.93950 0.98046 1.17390 0.88388 0.91718 0.90602 1.19509 1.29222 1.11113 0.89976 0.90506 1.25845 0.93545 0.94544 1.00314 1.69778 1.27108 1.24617 1.22003 0.86202 0.79724 0.79997 0.80388 1.18579 1.19882 1.20050 1.20827 1.10794 0.97745 0.95993 0.93589 0.91554 0.91317 0.91119 0.87585 0.90201 0.89697 0.91111 0.92413 0.92383 0.92682 0.92030 0.92708 0.93426 0.75223 0.87494 0.88799 0.86207 0.91083 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.62 37.16 0.36 -1.43 16 2 C 0.10 1.10 5.70 -4.04 -0.02 1.07 16 3 N -0.59 -6.96 2.38 -174.23 -0.41 -7.37 16 4 C 0.12 1.12 4.96 -4.04 -0.02 1.10 16 5 C -0.11 -1.00 3.13 -90.62 -0.28 -1.28 16 6 C -0.14 -0.99 9.19 37.15 0.34 -0.65 16 7 C -0.14 -1.53 7.87 37.16 0.29 -1.24 16 8 C 0.51 7.54 6.43 -11.63 -0.07 7.46 16 9 O -0.52 -8.28 13.89 5.49 0.08 -8.20 16 10 C 0.49 8.49 7.30 -11.63 -0.08 8.40 16 11 O -0.50 -9.02 8.85 5.47 0.05 -8.98 16 12 N -0.63 -11.69 5.33 -10.34 -0.06 -11.74 16 13 C 0.14 3.15 6.33 -83.82 -0.53 2.62 16 14 C -0.22 -4.94 8.68 -39.08 -0.34 -5.28 16 15 C -0.10 -2.34 10.01 -39.69 -0.40 -2.74 16 16 C -0.15 -3.88 8.63 -38.84 -0.34 -4.22 16 17 C 0.12 3.20 5.51 -106.85 -0.59 2.61 16 18 C -0.47 -12.26 9.05 -37.74 -0.34 -12.60 16 19 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 20 C 0.07 1.83 5.30 -17.34 -0.09 1.74 16 21 N -0.81 -20.86 10.93 55.55 0.61 -20.25 16 22 Si 0.91 18.74 29.56 -169.99 -5.03 13.72 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.23 -5.55 9.69 -38.67 -0.37 -5.93 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.97 6.37 -51.93 -0.33 0.64 16 30 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 31 H 0.11 1.37 5.83 -51.93 -0.30 1.07 16 32 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.08 0.89 7.50 -51.93 -0.39 0.50 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.05 0.73 5.95 -51.93 -0.31 0.42 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.41 6.89 8.28 -40.82 -0.34 6.55 16 42 H 0.11 2.33 6.14 -52.49 -0.32 2.01 16 43 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 44 H 0.12 3.17 6.41 -52.48 -0.34 2.84 16 45 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 46 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -28.14 369.42 -8.62 -36.76 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.93 Total: 10.85 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.49 Total: -10.36 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.14 Total: -39.36 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.12 Total: -17.18 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.14 -8.62 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453605001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.936 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds