Wall clock time and date at job start Tue Mar 31 2020 12:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.46975 * 2 1 4 4 C 1.46503 * 120.00165 * 263.51648 * 3 2 1 5 5 C 1.53001 * 109.47048 * 270.00141 * 4 3 2 6 6 C 1.52995 * 109.47417 * 174.99972 * 5 4 3 7 7 C 1.53004 * 109.47210 * 294.99814 * 5 4 3 8 8 C 1.34784 * 120.00072 * 83.51855 * 3 2 1 9 9 O 1.21357 * 119.99913 * 174.81604 * 8 3 2 10 10 C 1.49351 * 119.99663 * 354.80811 * 8 3 2 11 11 O 1.21380 * 120.00260 * 0.66681 * 10 8 3 12 12 N 1.34778 * 119.99888 * 180.65717 * 10 8 3 13 13 C 1.39738 * 120.00222 * 185.43093 * 12 10 8 14 14 C 1.39347 * 119.95100 * 29.83785 * 13 12 10 15 15 C 1.38478 * 120.41977 * 180.02562 * 14 13 12 16 16 C 1.37687 * 120.32735 * 0.27993 * 15 14 13 17 17 C 1.40745 * 119.90038 * 359.49731 * 16 15 14 18 18 C 1.41412 * 120.21226 * 180.24949 * 17 16 15 19 19 H 1.07993 * 120.00632 * 213.24575 * 18 17 16 20 20 C 1.39934 * 119.99586 * 33.24114 * 18 17 16 21 21 N 1.30827 * 120.00210 * 6.40647 * 20 18 17 22 22 Si 1.86797 * 120.00018 * 186.40626 * 20 18 17 23 23 H 1.48505 * 109.46953 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47464 * 119.99941 * 22 20 18 25 25 H 1.48506 * 109.47326 * 240.00126 * 22 20 18 26 26 C 1.38300 * 119.95563 * 209.86525 * 13 12 10 27 27 H 1.08999 * 109.47214 * 59.99958 * 1 2 3 28 28 H 1.09006 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47189 * 299.99689 * 1 2 3 30 30 H 1.09004 * 109.46978 * 239.99847 * 2 1 3 31 31 H 1.09003 * 109.47006 * 120.00512 * 2 1 3 32 32 H 1.08994 * 109.46884 * 29.99883 * 4 3 2 33 33 H 1.08999 * 109.47251 * 150.00646 * 4 3 2 34 34 H 1.08997 * 109.47173 * 54.99639 * 5 4 3 35 35 H 1.08997 * 109.47220 * 59.99696 * 6 5 4 36 36 H 1.08999 * 109.47477 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47085 * 300.00067 * 6 5 4 38 38 H 1.08997 * 109.47310 * 300.00347 * 7 5 4 39 39 H 1.09005 * 109.46877 * 60.00094 * 7 5 4 40 40 H 1.08998 * 109.47031 * 179.97438 * 7 5 4 41 41 H 0.97004 * 119.99597 * 5.42973 * 12 10 8 42 42 H 1.07994 * 119.78885 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.82915 * 180.02562 * 15 14 13 44 44 H 1.08007 * 120.04725 * 179.74214 * 16 15 14 45 45 H 0.97000 * 120.00238 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.16126 * 359.95577 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3975 2.0241 -1.2606 5 6 3.8809 1.7701 -1.5366 6 6 4.2478 2.3336 -2.9109 7 6 4.7247 2.4580 -0.4615 8 6 2.1187 2.0605 1.1598 9 8 2.6107 3.1698 1.1726 10 6 1.6243 1.4480 2.4291 11 8 1.1431 0.3337 2.4181 12 7 1.7126 2.1326 3.5867 13 6 1.3560 1.5188 4.7903 14 6 1.5101 0.1422 4.9417 15 6 1.1593 -0.4761 6.1301 16 6 0.6487 0.2625 7.1738 17 6 0.4917 1.6545 7.0375 18 6 -0.0272 2.4203 8.1071 19 1 -0.6341 3.2901 7.9039 20 6 0.2458 2.0509 9.4289 21 7 1.0810 1.0747 9.6761 22 14 -0.5824 2.9515 10.8404 23 1 -1.4751 4.0071 10.2981 24 1 -1.3819 1.9892 11.6404 25 1 0.4520 3.5746 11.7048 26 6 0.8501 2.2784 5.8295 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8007 1.6102 -2.0734 33 1 2.2199 3.0971 -1.1891 34 1 4.0751 0.6977 -1.5199 35 1 4.0535 3.4060 -2.9275 36 1 5.3046 2.1531 -3.1073 37 1 3.6467 1.8436 -3.6767 38 1 4.5305 3.5304 -0.4781 39 1 4.4634 2.0565 0.5176 40 1 5.7814 2.2767 -0.6579 41 1 2.0237 3.0514 3.5843 42 1 1.9056 -0.4462 4.1271 43 1 1.2831 -1.5437 6.2372 44 1 0.3727 -0.2250 8.0973 45 1 1.2700 0.8184 10.5924 46 1 0.7304 3.3455 5.7135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453605001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:28 Heat of formation + Delta-G solvation = -63.303939 kcal Electronic energy + Delta-G solvation = -26792.262818 eV Core-core repulsion = 23067.172122 eV Total energy + Delta-G solvation = -3725.090696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21706 -40.41288 -38.92261 -37.91478 -36.37082 -35.49440 -34.79060 -31.77559 -31.38257 -30.36631 -28.24764 -27.92201 -27.18824 -25.39316 -24.20123 -23.00969 -22.42316 -21.29376 -20.44952 -19.46545 -18.81190 -18.08674 -17.40219 -17.21386 -16.83400 -16.63657 -16.33617 -15.72658 -15.59373 -15.55120 -14.91562 -14.75550 -14.56301 -14.23745 -14.06785 -14.02371 -13.63758 -13.48677 -13.21157 -13.07787 -12.92368 -12.85270 -12.79647 -12.59004 -12.48971 -12.25853 -12.15853 -11.90646 -11.84244 -11.81533 -11.59708 -11.54417 -11.12884 -10.88258 -10.35119 -9.82073 -9.37253 -8.76245 -8.55781 -6.40316 0.15620 0.94690 1.05072 1.29642 1.40697 1.51074 1.55181 2.13350 2.23931 2.44478 2.79017 3.24205 3.67938 3.86297 3.94359 4.04115 4.20423 4.38496 4.40355 4.50125 4.58513 4.60844 4.64364 4.78751 4.83127 4.85841 4.88791 4.98363 4.99843 5.02254 5.07069 5.09584 5.11796 5.22159 5.31730 5.34238 5.40709 5.43231 5.51837 5.68293 5.72543 5.94744 6.05603 6.08355 6.20050 6.42735 6.64483 6.70070 6.90272 6.94899 7.02102 8.41487 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.002674 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.992226 B =10470.184939 C =10889.924155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.573 5.573 4 C 0.114 3.886 5 C -0.108 4.108 6 C -0.139 4.139 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.534 6.534 10 C 0.492 3.508 11 O -0.504 6.504 12 N -0.634 5.634 13 C 0.153 3.847 14 C -0.222 4.222 15 C -0.098 4.098 16 C -0.177 4.177 17 C 0.095 3.905 18 C -0.500 4.500 19 H 0.075 0.925 20 C 0.032 3.968 21 N -0.838 5.838 22 Si 0.986 3.014 23 H -0.259 1.259 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.246 4.246 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.055 0.945 41 H 0.420 0.580 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.286 0.714 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -0.622 -21.306 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 N -0.305 5.305 4 C -0.007 4.007 5 C -0.127 4.127 6 C -0.197 4.197 7 C -0.196 4.196 8 C 0.293 3.707 9 O -0.412 6.412 10 C 0.275 3.725 11 O -0.379 6.379 12 N -0.280 5.280 13 C 0.060 3.940 14 C -0.243 4.243 15 C -0.117 4.117 16 C -0.197 4.197 17 C 0.092 3.908 18 C -0.531 4.531 19 H 0.094 0.906 20 C -0.181 4.181 21 N -0.465 5.465 22 Si 0.807 3.193 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.267 4.267 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.257 0.743 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.409 -0.957 -21.204 21.498 hybrid contribution -0.090 0.769 1.209 1.435 sum 3.319 -0.189 -19.995 20.270 Atomic orbital electron populations 1.22054 0.95317 1.02920 1.01106 1.22059 0.95213 0.80174 1.04774 1.47965 1.61693 1.15153 1.05693 1.21964 0.96000 0.98895 0.83852 1.21511 0.93983 1.00938 0.96258 1.21728 1.02133 1.01158 0.94645 1.21803 0.99475 1.00469 0.97813 1.19787 0.80189 0.85665 0.85058 1.90743 1.43982 1.20161 1.86272 1.20522 0.80313 0.86399 0.85275 1.90707 1.42117 1.19125 1.85982 1.43166 1.63065 1.17250 1.04481 1.17486 0.99145 0.92673 0.84652 1.20607 1.11982 0.93027 0.98707 1.20863 0.98846 0.98981 0.93000 1.21373 1.05877 0.94126 0.98321 1.17740 0.89091 0.92299 0.91673 1.19758 1.30440 1.11719 0.91147 0.90645 1.26709 0.93704 0.95222 1.02493 1.69847 1.27903 1.25749 1.23050 0.85098 0.78680 0.78742 0.76783 1.18286 1.19011 1.19259 1.20952 1.11319 0.98396 0.96063 0.91704 0.90573 0.94788 0.87310 0.89746 0.86883 0.90653 0.90363 0.92631 0.91975 0.90827 0.93232 0.95365 0.92558 0.74298 0.86413 0.86561 0.87779 0.90369 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.62 71.98 0.69 -2.45 16 2 C 0.10 1.91 5.70 86.38 0.49 2.40 16 3 N -0.57 -12.45 2.38 -823.50 -1.96 -14.41 16 4 C 0.11 1.83 4.96 86.38 0.43 2.26 16 5 C -0.11 -1.61 3.13 -10.79 -0.03 -1.64 16 6 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 7 C -0.14 -2.87 7.87 71.98 0.57 -2.30 16 8 C 0.51 14.81 6.43 87.24 0.56 15.37 16 9 O -0.53 -16.88 13.89 -3.27 -0.05 -16.93 16 10 C 0.49 16.85 7.30 87.24 0.64 17.48 16 11 O -0.50 -18.18 8.85 -3.34 -0.03 -18.21 16 12 N -0.63 -23.67 5.33 -304.98 -1.63 -25.30 16 13 C 0.15 6.90 6.33 38.16 0.24 7.14 16 14 C -0.22 -10.16 8.68 22.59 0.20 -9.97 16 15 C -0.10 -4.66 10.01 22.20 0.22 -4.44 16 16 C -0.18 -9.42 8.63 22.75 0.20 -9.22 16 17 C 0.09 5.15 5.51 -21.31 -0.12 5.03 16 18 C -0.50 -27.07 9.05 23.46 0.21 -26.86 16 19 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 20 C 0.03 1.61 5.30 85.25 0.45 2.06 16 21 N -0.84 -44.30 10.93 21.82 0.24 -44.06 16 22 Si 0.99 38.75 29.56 68.60 2.03 40.77 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.25 -12.09 9.69 22.86 0.22 -11.87 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.03 0.92 6.37 -2.39 -0.02 0.91 16 30 H 0.11 1.33 8.02 -2.38 -0.02 1.31 16 31 H 0.08 2.06 5.83 -2.39 -0.01 2.04 16 32 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.08 1.41 7.50 -2.39 -0.02 1.40 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 1.13 7.92 -2.39 -0.02 1.11 16 39 H 0.03 0.72 5.95 -2.38 -0.01 0.71 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.42 14.21 8.28 -92.71 -0.77 13.44 16 42 H 0.12 5.09 6.14 -2.91 -0.02 5.07 16 43 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 44 H 0.10 5.77 6.41 -2.91 -0.02 5.75 16 45 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 46 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -62.76 369.42 4.46 -58.30 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.22 Total: 37.63 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.63 Total: -17.81 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.34 Total: -83.76 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.07 Total: -35.14 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.77 kcal Total: -62.76 4.46 -58.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453605001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.003 kcal (2) G-P(sol) polarization free energy of solvation -62.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds