Wall clock time and date at job start Tue Mar 31 2020 12:24:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.46965 * 2 1
4 4 N 1.46499 * 109.47136 * 120.00350 * 2 1 3
5 5 C 1.34777 * 119.99665 * 275.27771 * 4 2 1
6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2
7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2
8 8 C 1.52999 * 109.47004 * 179.97438 * 7 5 4
9 9 C 1.50702 * 109.47522 * 179.97438 * 8 7 5
10 10 H 1.08002 * 119.99446 * 0.02562 * 9 8 7
11 11 C 1.37880 * 120.00275 * 179.97438 * 9 8 7
12 12 N 1.31514 * 119.99843 * 0.02562 * 11 9 8
13 13 Si 1.86801 * 119.99948 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.46896 * 90.00154 * 13 11 9
15 15 H 1.48499 * 109.47039 * 210.00314 * 13 11 9
16 16 H 1.48502 * 109.46906 * 330.00220 * 13 11 9
17 17 C 1.50696 * 109.46890 * 240.00408 * 2 1 3
18 18 O 1.21283 * 119.99709 * 240.00076 * 17 2 1
19 19 N 1.34773 * 120.00429 * 59.99829 * 17 2 1
20 20 C 1.46508 * 120.00331 * 179.97438 * 19 17 2
21 21 C 1.52997 * 109.46928 * 180.02562 * 20 19 17
22 22 C 1.50706 * 109.46689 * 180.02562 * 21 20 19
23 23 C 1.38234 * 120.00166 * 269.72645 * 22 21 20
24 24 C 1.38229 * 119.99986 * 179.76970 * 23 22 21
25 25 C 1.38235 * 120.00049 * 0.50670 * 24 23 22
26 26 C 1.38237 * 120.00024 * 359.74699 * 25 24 23
27 27 C 1.38231 * 119.99667 * 359.97438 * 26 25 24
28 28 H 1.08999 * 109.47488 * 299.99925 * 1 2 3
29 29 H 1.09005 * 109.47368 * 59.99853 * 1 2 3
30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3
31 31 H 0.97001 * 119.99790 * 94.99484 * 4 2 1
32 32 H 1.09003 * 109.47112 * 299.99065 * 7 5 4
33 33 H 1.08993 * 109.47916 * 59.99687 * 7 5 4
34 34 H 1.09000 * 109.47527 * 299.99994 * 8 7 5
35 35 H 1.09007 * 109.47302 * 59.99534 * 8 7 5
36 36 H 0.96995 * 119.99771 * 179.97438 * 12 11 9
37 37 H 0.96998 * 120.00119 * 0.02562 * 19 17 2
38 38 H 1.08997 * 109.46739 * 300.00223 * 20 19 17
39 39 H 1.08999 * 109.46782 * 60.00000 * 20 19 17
40 40 H 1.09000 * 109.47677 * 300.00082 * 21 20 19
41 41 H 1.09005 * 109.47439 * 60.00730 * 21 20 19
42 42 H 1.08001 * 119.99662 * 359.97438 * 23 22 21
43 43 H 1.08004 * 120.00015 * 180.23119 * 24 23 22
44 44 H 1.07998 * 119.99895 * 179.72771 * 25 24 23
45 45 H 1.07990 * 120.00214 * 179.97438 * 26 25 24
46 46 H 1.08003 * 119.99932 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 1.1961
5 6 2.1417 -0.0197 2.3585
6 8 1.8533 1.1571 2.4129
7 6 2.6382 -0.7317 3.5903
8 6 2.6849 0.2501 4.7628
9 6 3.1808 -0.4620 5.9950
10 1 3.4374 -1.5100 5.9464
11 6 3.3080 0.2246 7.1839
12 7 2.9960 1.5009 7.2428
13 14 3.9233 -0.6579 8.7109
14 1 5.4031 -0.5544 8.7799
15 1 3.3265 -0.0326 9.9184
16 1 3.5295 -2.0884 8.6483
17 6 2.0322 -0.7103 -1.2305
18 8 2.7295 -1.6964 -1.1193
19 7 1.7067 -0.2499 -2.4546
20 6 2.1954 -0.9401 -3.6509
21 6 1.6858 -0.2185 -4.9000
22 6 2.1881 -0.9289 -6.1305
23 6 3.3934 -0.5601 -6.6980
24 6 3.8564 -1.2150 -7.8238
25 6 3.1090 -2.2316 -8.3884
26 6 1.9012 -2.5969 -7.8241
27 6 1.4410 -1.9459 -6.6948
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 2.2489 -1.6319 1.1525
32 1 1.9642 -1.5539 3.8312
33 1 3.6381 -1.1239 3.4053
34 1 3.3590 1.0721 4.5218
35 1 1.6851 0.6427 4.9482
36 1 3.0851 1.9838 8.0792
37 1 1.1493 0.5390 -2.5436
38 1 3.2854 -0.9397 -3.6506
39 1 1.8325 -1.9679 -3.6510
40 1 0.5958 -0.2185 -4.9004
41 1 2.0492 0.8092 -4.8996
42 1 3.9750 0.2374 -6.2597
43 1 4.7999 -0.9293 -8.2650
44 1 3.4687 -2.7403 -9.2706
45 1 1.3171 -3.3909 -8.2654
46 1 0.4971 -2.2310 -6.2541
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000457277328.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:05
Heat of formation + Delta-G solvation = -71.485805 kcal
Electronic energy + Delta-G solvation = -24834.794860 eV
Core-core repulsion = 21109.349372 eV
Total energy + Delta-G solvation = -3725.445488 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.43009 -39.71139 -38.79390 -35.92352 -34.81727 -33.41188 -33.16770 -31.36582
-31.32929 -30.21994 -28.64923 -25.83446 -24.92380 -23.47784 -23.02566 -21.61871
-21.52192 -20.31627 -19.75217 -17.69202 -17.19171 -16.80604 -16.40464 -16.19165
-15.72110 -15.50669 -15.29987 -15.07998 -14.79013 -14.38507 -14.17368 -13.85391
-13.73976 -13.47838 -13.28941 -13.23664 -12.85426 -12.51845 -12.28081 -12.20213
-12.05540 -11.95526 -11.63058 -11.54278 -11.37062 -11.12376 -10.89950 -10.57319
-10.05351 -9.91687 -9.64015 -9.45469 -9.34449 -9.19156 -9.16124 -9.00698
-8.86329 -8.28949 -5.93338 -3.97293 0.87730 0.96393 2.36797 2.68746
3.25054 3.33974 3.36048 3.41809 3.44709 3.60172 4.27341 4.32721
4.43773 4.50514 4.55685 4.63756 4.67986 4.70197 4.95916 5.04610
5.06094 5.07519 5.11954 5.35533 5.41740 5.42110 5.52079 5.58664
5.60960 5.61615 5.79863 6.00281 6.04233 6.06785 6.08712 6.15132
6.27904 6.30929 6.55588 6.62515 6.93578 7.13675 7.77684 7.87543
7.89444 7.93137 8.10023 8.41986 8.76913 9.11122 9.66083 11.17633
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.034551 B = 0.001680 C = 0.001652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 810.201621 B =16660.228650 C =16947.812457
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.125 3.875
3 H 0.112 0.888
4 N -0.728 5.728
5 C 0.515 3.485
6 O -0.536 6.536
7 C -0.129 4.129
8 C 0.037 3.963
9 C -0.527 4.527
10 H 0.056 0.944
11 C 0.058 3.942
12 N -0.890 5.890
13 Si 0.893 3.107
14 H -0.281 1.281
15 H -0.287 1.287
16 H -0.274 1.274
17 C 0.514 3.486
18 O -0.532 6.532
19 N -0.730 5.730
20 C 0.125 3.875
21 C -0.093 4.093
22 C -0.082 4.082
23 C -0.113 4.113
24 C -0.119 4.119
25 C -0.123 4.123
26 C -0.119 4.119
27 C -0.114 4.114
28 H 0.078 0.922
29 H 0.065 0.935
30 H 0.062 0.938
31 H 0.407 0.593
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.024 0.976
35 H 0.024 0.976
36 H 0.260 0.740
37 H 0.403 0.597
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.081 0.919
41 H 0.081 0.919
42 H 0.123 0.877
43 H 0.122 0.878
44 H 0.121 0.879
45 H 0.122 0.878
46 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.756 -5.441 -33.412 34.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.016 3.984
3 H 0.130 0.870
4 N -0.384 5.384
5 C 0.304 3.696
6 O -0.411 6.411
7 C -0.169 4.169
8 C 0.000 4.000
9 C -0.565 4.565
10 H 0.074 0.926
11 C -0.144 4.144
12 N -0.529 5.529
13 Si 0.721 3.279
14 H -0.207 1.207
15 H -0.212 1.212
16 H -0.199 1.199
17 C 0.299 3.701
18 O -0.407 6.407
19 N -0.383 5.383
20 C 0.002 3.998
21 C -0.130 4.130
22 C -0.083 4.083
23 C -0.132 4.132
24 C -0.137 4.137
25 C -0.141 4.141
26 C -0.137 4.137
27 C -0.132 4.132
28 H 0.097 0.903
29 H 0.084 0.916
30 H 0.081 0.919
31 H 0.243 0.757
32 H 0.099 0.901
33 H 0.100 0.900
34 H 0.042 0.958
35 H 0.042 0.958
36 H 0.070 0.930
37 H 0.238 0.762
38 H 0.088 0.912
39 H 0.089 0.911
40 H 0.099 0.901
41 H 0.100 0.900
42 H 0.141 0.859
43 H 0.140 0.860
44 H 0.139 0.861
45 H 0.140 0.860
46 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -4.454 -5.151 -33.147 33.839
hybrid contribution 0.224 -0.515 0.621 0.837
sum -4.229 -5.666 -32.526 33.286
Atomic orbital electron populations
1.22146 0.93165 1.02925 1.03486 1.20651 0.95485 0.98307 0.83976
0.86993 1.46046 1.69300 1.14764 1.08261 1.21611 0.76105 0.87561
0.84335 1.90657 1.49163 1.16337 1.84990 1.21871 1.01181 1.01048
0.92808 1.18908 0.98384 0.93334 0.89419 1.21240 1.44401 0.96383
0.94462 0.92560 1.25020 0.95555 0.94853 0.98950 1.69999 1.48247
1.08169 1.26482 0.86587 0.78927 0.79753 0.82654 1.20693 1.21248
1.19888 1.20818 0.79862 0.84616 0.84782 1.90713 1.37296 1.26148
1.86585 1.45936 1.54431 1.32531 1.05431 1.21323 0.99752 0.96381
0.82377 1.20795 1.01631 0.99437 0.91154 1.19653 0.95234 0.96956
0.96416 1.21106 0.95685 1.00142 0.96217 1.21180 0.99862 0.96355
0.96255 1.21198 0.95117 0.97624 1.00119 1.21171 0.96464 0.99826
0.96238 1.21090 0.99949 0.95920 0.96226 0.90292 0.91609 0.91916
0.75687 0.90078 0.90044 0.95801 0.95773 0.93001 0.76245 0.91153
0.91144 0.90058 0.90021 0.85900 0.85961 0.86093 0.85987 0.85945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.62 9.38 37.16 0.35 -1.28 16
2 C 0.13 1.56 2.98 -69.09 -0.21 1.35 16
3 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16
4 N -0.73 -11.12 4.95 -54.94 -0.27 -11.40 16
5 C 0.51 10.06 7.79 -10.99 -0.09 9.98 16
6 O -0.54 -12.33 15.65 5.55 0.09 -12.24 16
7 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16
8 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16
9 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16
10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16
11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
12 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16
13 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16
14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
17 C 0.51 6.01 7.22 -10.99 -0.08 5.93 16
18 O -0.53 -8.11 15.84 5.55 0.09 -8.02 16
19 N -0.73 -5.75 5.45 -60.29 -0.33 -6.07 16
20 C 0.13 0.93 5.66 -4.04 -0.02 0.91 16
21 C -0.09 -0.47 5.46 -27.88 -0.15 -0.62 16
22 C -0.08 -0.53 5.13 -104.62 -0.54 -1.07 16
23 C -0.11 -0.74 9.70 -39.59 -0.38 -1.13 16
24 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16
25 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16
26 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16
27 C -0.11 -0.72 9.70 -39.58 -0.38 -1.11 16
28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
29 H 0.06 0.46 7.57 -51.93 -0.39 0.06 16
30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.41 5.79 7.79 -40.82 -0.32 5.47 16
32 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16
33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16
34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16
35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16
36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
37 H 0.40 2.05 7.89 -40.82 -0.32 1.73 16
38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16
41 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16
42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16
43 H 0.12 0.56 8.06 -52.48 -0.42 0.13 16
44 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16
45 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16
46 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16
LS Contribution 392.05 15.07 5.91 5.91
Total: -1.00 -36.39 392.05 -9.48 -45.88
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: -7.30 Total: 2.18 kcal
Atomic # 6 Polarization: -2.89 SS G_CDS: -3.38 Total: -6.28 kcal
Atomic # 7 Polarization: -44.47 SS G_CDS: 0.14 Total: -44.33 kcal
Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.26 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -36.39 -9.48 -45.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457277328.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.609 kcal
(2) G-P(sol) polarization free energy of solvation -36.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.001 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds