Wall clock time and date at job start Tue Mar 31 2020 12:24:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.46965 * 2 1
4 4 N 1.46499 * 109.47136 * 120.00350 * 2 1 3
5 5 C 1.34777 * 119.99665 * 275.27771 * 4 2 1
6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2
7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2
8 8 C 1.52999 * 109.47004 * 179.97438 * 7 5 4
9 9 C 1.50702 * 109.47522 * 179.97438 * 8 7 5
10 10 H 1.08002 * 119.99446 * 0.02562 * 9 8 7
11 11 C 1.37880 * 120.00275 * 179.97438 * 9 8 7
12 12 N 1.31514 * 119.99843 * 0.02562 * 11 9 8
13 13 Si 1.86801 * 119.99948 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.46896 * 90.00154 * 13 11 9
15 15 H 1.48499 * 109.47039 * 210.00314 * 13 11 9
16 16 H 1.48502 * 109.46906 * 330.00220 * 13 11 9
17 17 C 1.50696 * 109.46890 * 240.00408 * 2 1 3
18 18 O 1.21283 * 119.99709 * 240.00076 * 17 2 1
19 19 N 1.34773 * 120.00429 * 59.99829 * 17 2 1
20 20 C 1.46508 * 120.00331 * 179.97438 * 19 17 2
21 21 C 1.52997 * 109.46928 * 180.02562 * 20 19 17
22 22 C 1.50706 * 109.46689 * 180.02562 * 21 20 19
23 23 C 1.38234 * 120.00166 * 269.72645 * 22 21 20
24 24 C 1.38229 * 119.99986 * 179.76970 * 23 22 21
25 25 C 1.38235 * 120.00049 * 0.50670 * 24 23 22
26 26 C 1.38237 * 120.00024 * 359.74699 * 25 24 23
27 27 C 1.38231 * 119.99667 * 359.97438 * 26 25 24
28 28 H 1.08999 * 109.47488 * 299.99925 * 1 2 3
29 29 H 1.09005 * 109.47368 * 59.99853 * 1 2 3
30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3
31 31 H 0.97001 * 119.99790 * 94.99484 * 4 2 1
32 32 H 1.09003 * 109.47112 * 299.99065 * 7 5 4
33 33 H 1.08993 * 109.47916 * 59.99687 * 7 5 4
34 34 H 1.09000 * 109.47527 * 299.99994 * 8 7 5
35 35 H 1.09007 * 109.47302 * 59.99534 * 8 7 5
36 36 H 0.96995 * 119.99771 * 179.97438 * 12 11 9
37 37 H 0.96998 * 120.00119 * 0.02562 * 19 17 2
38 38 H 1.08997 * 109.46739 * 300.00223 * 20 19 17
39 39 H 1.08999 * 109.46782 * 60.00000 * 20 19 17
40 40 H 1.09000 * 109.47677 * 300.00082 * 21 20 19
41 41 H 1.09005 * 109.47439 * 60.00730 * 21 20 19
42 42 H 1.08001 * 119.99662 * 359.97438 * 23 22 21
43 43 H 1.08004 * 120.00015 * 180.23119 * 24 23 22
44 44 H 1.07998 * 119.99895 * 179.72771 * 25 24 23
45 45 H 1.07990 * 120.00214 * 179.97438 * 26 25 24
46 46 H 1.08003 * 119.99932 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 1.1961
5 6 2.1417 -0.0197 2.3585
6 8 1.8533 1.1571 2.4129
7 6 2.6382 -0.7317 3.5903
8 6 2.6849 0.2501 4.7628
9 6 3.1808 -0.4620 5.9950
10 1 3.4374 -1.5100 5.9464
11 6 3.3080 0.2246 7.1839
12 7 2.9960 1.5009 7.2428
13 14 3.9233 -0.6579 8.7109
14 1 5.4031 -0.5544 8.7799
15 1 3.3265 -0.0326 9.9184
16 1 3.5295 -2.0884 8.6483
17 6 2.0322 -0.7103 -1.2305
18 8 2.7295 -1.6964 -1.1193
19 7 1.7067 -0.2499 -2.4546
20 6 2.1954 -0.9401 -3.6509
21 6 1.6858 -0.2185 -4.9000
22 6 2.1881 -0.9289 -6.1305
23 6 3.3934 -0.5601 -6.6980
24 6 3.8564 -1.2150 -7.8238
25 6 3.1090 -2.2316 -8.3884
26 6 1.9012 -2.5969 -7.8241
27 6 1.4410 -1.9459 -6.6948
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 2.2489 -1.6319 1.1525
32 1 1.9642 -1.5539 3.8312
33 1 3.6381 -1.1239 3.4053
34 1 3.3590 1.0721 4.5218
35 1 1.6851 0.6427 4.9482
36 1 3.0851 1.9838 8.0792
37 1 1.1493 0.5390 -2.5436
38 1 3.2854 -0.9397 -3.6506
39 1 1.8325 -1.9679 -3.6510
40 1 0.5958 -0.2185 -4.9004
41 1 2.0492 0.8092 -4.8996
42 1 3.9750 0.2374 -6.2597
43 1 4.7999 -0.9293 -8.2650
44 1 3.4687 -2.7403 -9.2706
45 1 1.3171 -3.3909 -8.2654
46 1 0.4971 -2.2310 -6.2541
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000457277328.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:04
Heat of formation + Delta-G solvation = -96.164273 kcal
Electronic energy + Delta-G solvation = -24835.864999 eV
Core-core repulsion = 21109.349372 eV
Total energy + Delta-G solvation = -3726.515627 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.48605 -40.37686 -39.99830 -36.68592 -36.09102 -35.50371 -33.84859 -33.12274
-31.75399 -31.56225 -29.26775 -27.72203 -25.85607 -24.44918 -23.45735 -23.29594
-22.04392 -21.29275 -21.24140 -19.06508 -18.33958 -17.82509 -17.56009 -17.06716
-16.81208 -16.49533 -16.46579 -16.25977 -15.96540 -15.77644 -15.02893 -14.93749
-14.53176 -14.34870 -14.19659 -14.17340 -13.94428 -13.77801 -13.57673 -13.33711
-13.21239 -12.82105 -12.76849 -12.66360 -12.46978 -12.44187 -11.97577 -11.91447
-11.78839 -11.64064 -11.29764 -11.06664 -10.77281 -10.55848 -10.25795 -10.14847
-9.80215 -9.62482 -8.17178 -6.30752 0.42528 0.51716 1.42035 1.42700
1.45315 1.56262 1.64125 1.81705 2.37325 2.47496 2.88891 3.15752
3.51783 3.91516 3.92882 3.96009 4.03094 4.08608 4.15160 4.19605
4.22845 4.31747 4.50948 4.55346 4.57679 4.63347 4.64769 4.65383
4.78962 4.94838 4.98731 5.07494 5.17878 5.18896 5.19583 5.31738
5.37169 5.51485 5.59192 5.64742 5.65249 5.70674 5.86297 6.13729
6.19233 6.38298 6.51963 6.86896 7.06244 7.27513 7.39120 8.95314
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.034551 B = 0.001680 C = 0.001652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 810.201621 B =16660.228650 C =16947.812457
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.120 3.880
3 H 0.107 0.893
4 N -0.712 5.712
5 C 0.520 3.480
6 O -0.578 6.578
7 C -0.121 4.121
8 C 0.043 3.957
9 C -0.546 4.546
10 H 0.073 0.927
11 C -0.005 4.005
12 N -0.935 5.935
13 Si 0.973 3.027
14 H -0.273 1.273
15 H -0.284 1.284
16 H -0.257 1.257
17 C 0.519 3.481
18 O -0.570 6.570
19 N -0.708 5.708
20 C 0.129 3.871
21 C -0.081 4.081
22 C -0.093 4.093
23 C -0.128 4.128
24 C -0.132 4.132
25 C -0.133 4.133
26 C -0.130 4.130
27 C -0.125 4.125
28 H 0.054 0.946
29 H 0.104 0.896
30 H 0.068 0.932
31 H 0.415 0.585
32 H 0.104 0.896
33 H 0.099 0.901
34 H -0.016 1.016
35 H -0.012 1.012
36 H 0.263 0.737
37 H 0.419 0.581
38 H 0.055 0.945
39 H 0.062 0.938
40 H 0.099 0.901
41 H 0.093 0.907
42 H 0.131 0.869
43 H 0.135 0.865
44 H 0.136 0.864
45 H 0.137 0.863
46 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.108 -6.931 -34.594 35.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.012 3.988
3 H 0.125 0.875
4 N -0.366 5.366
5 C 0.308 3.692
6 O -0.458 6.458
7 C -0.161 4.161
8 C 0.006 3.994
9 C -0.583 4.583
10 H 0.091 0.909
11 C -0.202 4.202
12 N -0.575 5.575
13 Si 0.797 3.203
14 H -0.198 1.198
15 H -0.210 1.210
16 H -0.181 1.181
17 C 0.304 3.696
18 O -0.449 6.449
19 N -0.361 5.361
20 C 0.005 3.995
21 C -0.119 4.119
22 C -0.093 4.093
23 C -0.146 4.146
24 C -0.150 4.150
25 C -0.151 4.151
26 C -0.148 4.148
27 C -0.143 4.143
28 H 0.073 0.927
29 H 0.123 0.877
30 H 0.088 0.912
31 H 0.252 0.748
32 H 0.122 0.878
33 H 0.117 0.883
34 H 0.003 0.997
35 H 0.006 0.994
36 H 0.072 0.928
37 H 0.257 0.743
38 H 0.073 0.927
39 H 0.080 0.920
40 H 0.117 0.883
41 H 0.111 0.889
42 H 0.148 0.852
43 H 0.152 0.848
44 H 0.154 0.846
45 H 0.155 0.845
46 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -4.830 -6.657 -34.405 35.374
hybrid contribution 0.325 -0.038 0.859 0.919
sum -4.504 -6.695 -33.546 34.503
Atomic orbital electron populations
1.22111 0.91053 1.03604 1.04267 1.20874 0.97092 0.97721 0.83139
0.87504 1.45802 1.67829 1.14968 1.08024 1.21222 0.75934 0.86848
0.85173 1.90644 1.51366 1.18008 1.85735 1.21646 1.03026 0.99969
0.91442 1.18689 0.95107 0.93585 0.92049 1.21719 1.44217 0.97270
0.95134 0.90887 1.26100 0.95556 0.95599 1.02986 1.70166 1.49531
1.10205 1.27617 0.85332 0.78411 0.78976 0.77584 1.19812 1.20978
1.18120 1.20584 0.79496 0.84029 0.85444 1.90705 1.39202 1.27880
1.87115 1.45766 1.53444 1.32542 1.04379 1.21323 0.98890 0.96356
0.82913 1.20730 1.02593 0.99418 0.89147 1.19831 0.95335 0.97260
0.96920 1.21340 0.96070 1.00624 0.96573 1.21444 1.00551 0.96534
0.96427 1.21480 0.95241 0.97705 1.00707 1.21459 0.96743 1.00263
0.96371 1.21348 1.00573 0.95939 0.96441 0.92663 0.87700 0.91247
0.74768 0.87793 0.88298 0.99720 0.99397 0.92838 0.74270 0.92690
0.91952 0.88299 0.88854 0.85153 0.84757 0.84618 0.84521 0.84698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.84 9.38 71.98 0.67 -2.16 16
2 C 0.12 2.86 2.98 44.24 0.13 2.99 16
3 H 0.11 2.72 7.58 -2.39 -0.02 2.70 16
4 N -0.71 -21.29 4.95 -446.11 -2.21 -23.50 16
5 C 0.52 20.52 7.79 87.66 0.68 21.20 16
6 O -0.58 -27.52 15.65 -3.04 -0.05 -27.57 16
7 C -0.12 -5.07 5.64 29.85 0.17 -4.91 16
8 C 0.04 2.45 4.26 29.85 0.13 2.57 16
9 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16
10 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16
11 C 0.00 -0.28 5.46 84.66 0.46 0.18 16
12 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16
13 Si 0.97 44.92 29.54 68.60 2.03 46.94 16
14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16
15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16
17 C 0.52 11.36 7.22 87.66 0.63 12.00 16
18 O -0.57 -16.85 15.84 -3.04 -0.05 -16.90 16
19 N -0.71 -9.56 5.45 -463.06 -2.52 -12.08 16
20 C 0.13 1.70 5.66 86.38 0.49 2.19 16
21 C -0.08 -0.64 5.46 29.85 0.16 -0.47 16
22 C -0.09 -1.06 5.13 -19.86 -0.10 -1.16 16
23 C -0.13 -1.56 9.70 22.27 0.22 -1.34 16
24 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16
25 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16
26 C -0.13 -1.44 10.05 22.27 0.22 -1.22 16
27 C -0.13 -1.41 9.70 22.27 0.22 -1.19 16
28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
29 H 0.10 1.11 7.57 -2.38 -0.02 1.10 16
30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16
31 H 0.41 11.32 7.79 -92.71 -0.72 10.60 16
32 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16
33 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16
34 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16
35 H -0.01 -0.78 8.10 -2.38 -0.02 -0.80 16
36 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16
37 H 0.42 2.95 7.89 -92.71 -0.73 2.21 16
38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.10 0.46 8.08 -2.39 -0.02 0.44 16
41 H 0.09 0.54 8.08 -2.38 -0.02 0.52 16
42 H 0.13 1.27 8.06 -2.91 -0.02 1.24 16
43 H 0.13 1.12 8.06 -2.91 -0.02 1.09 16
44 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16
45 H 0.14 0.99 8.06 -2.92 -0.02 0.97 16
46 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16
Total: -1.00 -81.69 392.05 1.78 -79.91
By element:
Atomic # 1 Polarization: 18.24 SS G_CDS: -0.47 Total: 17.77 kcal
Atomic # 6 Polarization: -10.09 SS G_CDS: 4.77 Total: -5.32 kcal
Atomic # 7 Polarization: -90.38 SS G_CDS: -4.45 Total: -94.83 kcal
Atomic # 8 Polarization: -44.37 SS G_CDS: -0.10 Total: -44.47 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal
Total: -81.69 1.78 -79.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457277328.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.254 kcal
(2) G-P(sol) polarization free energy of solvation -81.686 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.941 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.910 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds