Wall clock time and date at job start Tue Mar 31 2020 12:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46910 * 2 1 4 4 C 1.34776 * 120.00130 * 270.00135 * 3 2 1 5 5 O 1.21586 * 120.00187 * 180.02562 * 4 3 2 6 6 N 1.34783 * 119.99561 * 359.97438 * 4 3 2 7 7 C 1.46506 * 119.99750 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46982 * 325.00753 * 7 6 4 9 9 C 1.52997 * 109.47409 * 205.00172 * 7 6 4 10 10 C 1.50706 * 109.46859 * 65.00401 * 9 7 6 11 11 H 1.08000 * 119.99898 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99823 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00215 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47195 * 89.99700 * 14 12 10 16 16 H 1.48493 * 109.47357 * 209.99713 * 14 12 10 17 17 H 1.48499 * 109.46860 * 330.00015 * 14 12 10 18 18 C 1.50707 * 109.46731 * 85.00394 * 7 6 4 19 19 C 1.38237 * 119.99627 * 39.72825 * 18 7 6 20 20 C 1.38234 * 119.99608 * 179.80799 * 19 18 7 21 21 C 1.38240 * 120.00266 * 0.39774 * 20 19 18 22 22 C 1.38237 * 119.99657 * 359.85605 * 21 20 19 23 23 C 1.38230 * 120.00167 * 219.99905 * 18 7 6 24 24 C 1.46500 * 120.00084 * 89.99810 * 3 2 1 25 25 C 1.54037 * 113.81484 * 141.49095 * 24 3 2 26 26 O 1.44453 * 85.42226 * 91.81090 * 25 24 3 27 27 C 1.44175 * 93.38118 * 24.08939 * 26 25 24 28 28 H 1.08994 * 109.47433 * 299.99926 * 1 2 3 29 29 H 1.09002 * 109.47181 * 60.00441 * 1 2 3 30 30 H 1.09005 * 109.46672 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47179 * 239.99863 * 2 1 3 32 32 H 1.09002 * 109.47181 * 119.99559 * 2 1 3 33 33 H 0.96993 * 120.00548 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.47212 * 185.00306 * 9 7 6 35 35 H 1.08997 * 109.46869 * 305.01172 * 9 7 6 36 36 H 0.96993 * 119.99868 * 180.02562 * 13 12 10 37 37 H 1.07992 * 120.00484 * 359.97438 * 19 18 7 38 38 H 1.08001 * 120.00206 * 180.22616 * 20 19 18 39 39 H 1.07994 * 120.00414 * 179.83054 * 21 20 19 40 40 H 1.07998 * 120.00115 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00013 * 359.97438 * 23 18 7 42 42 H 1.09002 * 112.99830 * 9.66750 * 24 3 2 43 43 H 1.08996 * 113.86647 * 205.91512 * 25 24 3 44 44 H 1.09000 * 113.86636 * 337.62461 * 25 24 3 45 45 H 1.09000 * 113.86303 * 221.77269 * 27 26 25 46 46 H 1.08998 * 113.98471 * 90.07076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6486 3.1628 -1.1672 6 7 2.0187 1.3810 -2.3344 7 6 2.2623 2.0718 -3.6032 8 1 2.0094 3.1267 -3.4969 9 6 1.3956 1.4474 -4.6985 10 6 -0.0590 1.6881 -4.3864 11 1 -0.3373 2.2325 -3.4961 12 6 -1.0344 1.2135 -5.2375 13 7 -0.6954 0.5511 -6.3219 14 14 -2.8373 1.5125 -4.8510 15 1 -3.2705 2.7916 -5.4688 16 1 -3.6522 0.3980 -5.3975 17 1 -3.0225 1.5859 -3.3794 18 6 3.7164 1.9390 -3.9763 19 6 4.3782 0.7441 -3.7634 20 6 5.7108 0.6210 -4.1093 21 6 6.3840 1.6953 -4.6605 22 6 5.7236 2.8917 -4.8686 23 6 4.3898 3.0136 -4.5263 24 6 2.2624 2.0719 1.2687 25 6 3.5116 2.9730 1.2560 26 8 2.6070 4.0243 0.8521 27 6 1.4578 3.3752 1.4323 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6955 0.4665 -2.3344 34 1 1.6411 1.9009 -5.6588 35 1 1.5847 0.3749 -4.7441 36 1 -1.3815 0.2175 -6.9208 37 1 3.8534 -0.0940 -3.3293 38 1 6.2270 -0.3136 -3.9464 39 1 7.4259 1.6000 -4.9283 40 1 6.2495 3.7312 -5.2988 41 1 3.8738 3.9483 -4.6889 42 1 2.2067 1.4089 2.1321 43 1 3.9548 3.1264 2.2399 44 1 4.2431 2.7022 0.4946 45 1 0.5639 3.4225 0.8105 46 1 1.2705 3.6504 2.4702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579923951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:44 Heat of formation + Delta-G solvation = -1.366057 kcal Electronic energy + Delta-G solvation = -28111.407065 eV Core-core repulsion = 24389.002197 eV Total energy + Delta-G solvation = -3722.404868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88622 -39.20296 -38.12007 -35.50532 -34.97994 -32.64934 -30.92558 -30.51418 -30.37677 -28.83451 -27.77627 -26.31073 -24.87920 -23.21578 -22.22976 -21.98293 -21.62813 -19.75395 -19.00679 -17.58104 -16.82811 -16.35268 -16.10163 -15.71723 -15.36645 -15.23684 -14.91016 -14.55058 -14.51004 -14.31184 -13.72610 -13.57134 -13.29652 -13.03703 -12.89365 -12.57397 -12.49889 -12.24690 -12.07472 -11.77500 -11.49194 -11.32475 -11.17270 -11.07424 -10.88744 -10.69635 -10.58048 -10.39848 -10.34072 -9.73569 -9.52063 -9.26255 -9.11073 -8.52882 -8.47833 -8.43170 -8.19791 -8.10250 -6.07271 -4.09940 1.83974 1.86121 2.90284 3.27525 3.34670 3.37367 3.70955 3.87738 4.22758 4.40100 4.46027 4.51060 4.92664 5.04931 5.27050 5.29380 5.30127 5.31109 5.32139 5.33555 5.38796 5.42974 5.60015 5.63670 5.82929 5.87781 5.91046 5.96648 6.00349 6.16717 6.22359 6.35459 6.41691 6.47648 6.54184 6.64947 6.76312 6.89722 6.91432 7.05381 7.17245 7.29984 7.46607 7.54460 7.72520 7.90252 8.29111 8.53773 8.96085 9.22776 9.54611 11.03360 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.006438 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.606615 B = 4348.342932 C = 6686.101769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 N -0.621 5.621 4 C 0.695 3.305 5 O -0.556 6.556 6 N -0.717 5.717 7 C 0.202 3.798 8 H 0.086 0.914 9 C 0.024 3.976 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.069 4.069 19 C -0.107 4.107 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.107 4.107 24 C 0.105 3.895 25 C 0.032 3.968 26 O -0.336 6.336 27 C 0.016 3.984 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.394 0.606 34 H 0.034 0.966 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 -2.692 13.474 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 N -0.359 5.359 4 C 0.396 3.604 5 O -0.431 6.431 6 N -0.371 5.371 7 C 0.097 3.903 8 H 0.104 0.896 9 C -0.013 4.013 10 C -0.554 4.554 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.070 4.070 19 C -0.125 4.125 20 C -0.144 4.144 21 C -0.154 4.154 22 C -0.141 4.141 23 C -0.125 4.125 24 C -0.002 4.002 25 C -0.046 4.046 26 O -0.253 6.253 27 C -0.064 4.064 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.229 0.771 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.940 -1.685 13.122 15.967 hybrid contribution -1.340 -0.639 0.192 1.497 sum 7.600 -2.323 13.314 15.505 Atomic orbital electron populations 1.22271 0.95658 1.02335 1.03231 1.21484 0.94769 0.82366 1.02626 1.46941 1.71131 1.13940 1.03889 1.16064 0.79230 0.84820 0.80301 1.91045 1.51206 1.15438 1.85401 1.45330 1.70349 1.17401 1.04043 1.20093 0.88854 0.98148 0.83188 0.89615 1.19385 0.93467 0.96225 0.92239 1.21127 0.90587 1.35444 1.08222 0.92429 1.24976 0.98957 0.95165 0.95031 1.69960 1.33331 1.37260 1.12606 0.86623 0.85193 0.77838 0.78523 1.20654 1.21304 1.19962 1.20619 0.97030 0.93204 0.96177 1.20860 0.94226 0.97295 1.00131 1.21018 0.94885 0.98338 1.00192 1.20971 0.99374 0.93763 1.01323 1.21034 0.94847 0.97474 1.00737 1.21018 0.94216 0.98509 0.98781 1.23497 0.95856 0.94529 0.86287 1.24153 0.94554 0.86420 0.99497 1.89999 1.17379 1.43330 1.74627 1.24326 0.93044 0.90731 0.98260 0.92688 0.91073 0.91628 0.90544 0.90736 0.77061 0.94767 0.95905 0.92932 0.86856 0.86903 0.86956 0.86696 0.86215 0.88965 0.90688 0.89197 0.89538 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.23 5.92 -4.04 -0.02 1.21 16 3 N -0.62 -8.80 2.73 -179.35 -0.49 -9.29 16 4 C 0.69 12.76 7.73 -86.91 -0.67 12.09 16 5 O -0.56 -12.12 11.83 -19.49 -0.23 -12.35 16 6 N -0.72 -13.26 3.89 -59.81 -0.23 -13.49 16 7 C 0.20 4.21 2.12 -69.08 -0.15 4.07 16 8 H 0.09 1.99 7.44 -51.93 -0.39 1.61 16 9 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 10 C -0.52 -13.66 8.84 -34.44 -0.30 -13.97 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 14 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.07 -1.31 4.91 -104.62 -0.51 -1.83 16 19 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 20 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 21 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 22 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 24 C 0.10 1.29 4.75 -66.85 -0.32 0.97 16 25 C 0.03 0.44 8.15 37.64 0.31 0.74 16 26 O -0.34 -5.91 9.78 -60.01 -0.59 -6.49 16 27 C 0.02 0.21 8.62 37.64 0.32 0.53 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.85 6.36 -51.93 -0.33 0.52 16 32 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 33 H 0.39 6.78 6.33 -40.82 -0.26 6.52 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.11 1.83 7.71 -52.49 -0.40 1.42 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.12 2.10 8.04 -52.49 -0.42 1.68 16 42 H 0.09 0.80 7.97 -51.93 -0.41 0.39 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.41 7.40 -51.93 -0.38 1.02 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.64 377.30 -10.48 -43.11 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.20 Total: 8.97 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.13 Total: -7.38 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.01 Total: -47.61 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.82 Total: -18.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.64 -10.48 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579923951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.748 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds