Wall clock time and date at job start Tue Mar 31 2020 12:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46910 * 2 1 4 4 C 1.34776 * 120.00130 * 270.00135 * 3 2 1 5 5 O 1.21586 * 120.00187 * 180.02562 * 4 3 2 6 6 N 1.34783 * 119.99561 * 359.97438 * 4 3 2 7 7 C 1.46506 * 119.99750 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46982 * 325.00753 * 7 6 4 9 9 C 1.52997 * 109.47409 * 205.00172 * 7 6 4 10 10 C 1.50706 * 109.46859 * 65.00401 * 9 7 6 11 11 H 1.08000 * 119.99898 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99823 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00215 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47195 * 89.99700 * 14 12 10 16 16 H 1.48493 * 109.47357 * 209.99713 * 14 12 10 17 17 H 1.48499 * 109.46860 * 330.00015 * 14 12 10 18 18 C 1.50707 * 109.46731 * 85.00394 * 7 6 4 19 19 C 1.38237 * 119.99627 * 39.72825 * 18 7 6 20 20 C 1.38234 * 119.99608 * 179.80799 * 19 18 7 21 21 C 1.38240 * 120.00266 * 0.39774 * 20 19 18 22 22 C 1.38237 * 119.99657 * 359.85605 * 21 20 19 23 23 C 1.38230 * 120.00167 * 219.99905 * 18 7 6 24 24 C 1.46500 * 120.00084 * 89.99810 * 3 2 1 25 25 C 1.54037 * 113.81484 * 141.49095 * 24 3 2 26 26 O 1.44453 * 85.42226 * 91.81090 * 25 24 3 27 27 C 1.44175 * 93.38118 * 24.08939 * 26 25 24 28 28 H 1.08994 * 109.47433 * 299.99926 * 1 2 3 29 29 H 1.09002 * 109.47181 * 60.00441 * 1 2 3 30 30 H 1.09005 * 109.46672 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47179 * 239.99863 * 2 1 3 32 32 H 1.09002 * 109.47181 * 119.99559 * 2 1 3 33 33 H 0.96993 * 120.00548 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.47212 * 185.00306 * 9 7 6 35 35 H 1.08997 * 109.46869 * 305.01172 * 9 7 6 36 36 H 0.96993 * 119.99868 * 180.02562 * 13 12 10 37 37 H 1.07992 * 120.00484 * 359.97438 * 19 18 7 38 38 H 1.08001 * 120.00206 * 180.22616 * 20 19 18 39 39 H 1.07994 * 120.00414 * 179.83054 * 21 20 19 40 40 H 1.07998 * 120.00115 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00013 * 359.97438 * 23 18 7 42 42 H 1.09002 * 112.99830 * 9.66750 * 24 3 2 43 43 H 1.08996 * 113.86647 * 205.91512 * 25 24 3 44 44 H 1.09000 * 113.86636 * 337.62461 * 25 24 3 45 45 H 1.09000 * 113.86303 * 221.77269 * 27 26 25 46 46 H 1.08998 * 113.98471 * 90.07076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6486 3.1628 -1.1672 6 7 2.0187 1.3810 -2.3344 7 6 2.2623 2.0718 -3.6032 8 1 2.0094 3.1267 -3.4969 9 6 1.3956 1.4474 -4.6985 10 6 -0.0590 1.6881 -4.3864 11 1 -0.3373 2.2325 -3.4961 12 6 -1.0344 1.2135 -5.2375 13 7 -0.6954 0.5511 -6.3219 14 14 -2.8373 1.5125 -4.8510 15 1 -3.2705 2.7916 -5.4688 16 1 -3.6522 0.3980 -5.3975 17 1 -3.0225 1.5859 -3.3794 18 6 3.7164 1.9390 -3.9763 19 6 4.3782 0.7441 -3.7634 20 6 5.7108 0.6210 -4.1093 21 6 6.3840 1.6953 -4.6605 22 6 5.7236 2.8917 -4.8686 23 6 4.3898 3.0136 -4.5263 24 6 2.2624 2.0719 1.2687 25 6 3.5116 2.9730 1.2560 26 8 2.6070 4.0243 0.8521 27 6 1.4578 3.3752 1.4323 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6955 0.4665 -2.3344 34 1 1.6411 1.9009 -5.6588 35 1 1.5847 0.3749 -4.7441 36 1 -1.3815 0.2175 -6.9208 37 1 3.8534 -0.0940 -3.3293 38 1 6.2270 -0.3136 -3.9464 39 1 7.4259 1.6000 -4.9283 40 1 6.2495 3.7312 -5.2988 41 1 3.8738 3.9483 -4.6889 42 1 2.2067 1.4089 2.1321 43 1 3.9548 3.1264 2.2399 44 1 4.2431 2.7022 0.4946 45 1 0.5639 3.4225 0.8105 46 1 1.2705 3.6504 2.4702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579923951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:43 Heat of formation + Delta-G solvation = -20.214052 kcal Electronic energy + Delta-G solvation = -28112.224375 eV Core-core repulsion = 24389.002197 eV Total energy + Delta-G solvation = -3723.222178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09359 -40.54799 -39.40964 -36.79527 -36.54233 -34.65945 -32.34207 -31.68152 -31.55034 -30.55198 -29.01627 -27.35039 -26.67163 -24.31979 -23.81096 -23.39531 -22.80259 -21.22835 -20.37940 -18.81439 -18.52007 -17.78688 -17.47231 -16.87038 -16.66511 -16.59135 -16.37354 -16.22655 -15.80498 -15.52249 -14.92471 -14.81254 -14.64089 -14.43765 -14.21388 -14.18595 -13.68982 -13.60954 -13.45838 -13.37403 -12.92536 -12.74880 -12.65601 -12.48118 -12.38241 -12.13465 -12.08243 -11.86387 -11.57302 -11.37564 -11.32047 -10.85369 -10.59350 -10.38136 -9.93767 -9.74929 -9.55587 -9.44425 -8.20973 -6.30540 0.52656 0.56869 1.36221 1.38466 1.48192 1.70783 2.31243 2.38410 2.80286 2.95151 3.10636 3.20508 3.43652 3.99807 4.02722 4.05191 4.18474 4.21368 4.28680 4.32199 4.37893 4.42195 4.44783 4.52122 4.64800 4.66809 4.72194 4.76988 4.80166 4.95882 4.97436 5.11863 5.14233 5.20586 5.31205 5.38486 5.42869 5.52097 5.61913 5.63960 5.66962 5.72132 5.77657 5.91888 6.07344 6.16890 6.21634 6.81079 7.14107 7.37954 7.80534 8.89830 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.006438 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.606615 B = 4348.342932 C = 6686.101769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.616 5.616 4 C 0.690 3.310 5 O -0.596 6.596 6 N -0.714 5.714 7 C 0.221 3.779 8 H 0.049 0.951 9 C 0.040 3.960 10 C -0.524 4.524 11 H 0.047 0.953 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.954 3.046 15 H -0.280 1.280 16 H -0.277 1.277 17 H -0.268 1.268 18 C -0.096 4.096 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.134 4.134 24 C 0.109 3.891 25 C 0.032 3.968 26 O -0.388 6.388 27 C 0.013 3.987 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.399 0.601 34 H 0.003 0.997 35 H 0.012 0.988 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 -4.486 15.829 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.353 5.353 4 C 0.391 3.609 5 O -0.474 6.474 6 N -0.369 5.369 7 C 0.115 3.885 8 H 0.067 0.933 9 C 0.003 3.997 10 C -0.562 4.562 11 H 0.066 0.934 12 C -0.186 4.186 13 N -0.564 5.564 14 Si 0.779 3.221 15 H -0.206 1.206 16 H -0.202 1.202 17 H -0.193 1.193 18 C -0.097 4.097 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.153 4.153 24 C 0.004 3.996 25 C -0.046 4.046 26 O -0.307 6.307 27 C -0.065 4.065 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.236 0.764 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.126 0.874 42 H 0.164 0.836 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.011 -3.514 15.515 18.796 hybrid contribution -1.614 -0.056 -0.535 1.701 sum 8.396 -3.570 14.981 17.540 Atomic orbital electron populations 1.22219 0.96035 1.03153 1.01550 1.21748 0.94347 0.80734 1.04636 1.47009 1.70049 1.15021 1.03194 1.16256 0.78955 0.84439 0.81211 1.91021 1.52910 1.17265 1.86156 1.45122 1.70676 1.17430 1.03656 1.19498 0.90069 0.95684 0.83284 0.93324 1.19111 0.93295 0.95246 0.92092 1.21317 0.91948 1.35111 1.07856 0.93423 1.25732 1.03174 0.94851 0.94796 1.70066 1.34752 1.38148 1.13478 0.85623 0.80108 0.77777 0.78582 1.20623 1.20247 1.19267 1.20497 0.95995 0.94878 0.98343 1.21006 0.95513 0.96556 1.00606 1.21429 0.93888 0.99981 0.98819 1.21453 1.01053 0.92710 0.99495 1.21366 0.93669 0.99138 0.99990 1.21145 0.95877 0.98087 1.00160 1.23661 0.94399 0.95019 0.86541 1.24299 0.94080 0.85883 1.00290 1.89957 1.19516 1.45215 1.76004 1.24493 0.91118 0.91480 0.99413 0.91618 0.95424 0.89544 0.90941 0.86270 0.76428 0.97912 0.97015 0.92694 0.86396 0.83483 0.83058 0.84029 0.87449 0.83582 0.86645 0.92197 0.92551 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 10.24 71.98 0.74 -2.99 16 2 C 0.11 2.15 5.92 86.38 0.51 2.66 16 3 N -0.62 -16.94 2.73 -850.65 -2.32 -19.26 16 4 C 0.69 26.42 7.73 179.05 1.38 27.81 16 5 O -0.60 -27.58 11.83 19.70 0.23 -27.34 16 6 N -0.71 -27.97 3.89 -461.39 -1.79 -29.76 16 7 C 0.22 9.96 2.12 44.24 0.09 10.05 16 8 H 0.05 2.51 7.44 -2.39 -0.02 2.49 16 9 C 0.04 2.08 4.50 29.85 0.13 2.21 16 10 C -0.52 -29.24 8.84 25.60 0.23 -29.02 16 11 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 12 C 0.01 0.74 5.46 84.65 0.46 1.20 16 13 N -0.92 -54.43 13.29 21.45 0.28 -54.15 16 14 Si 0.95 44.15 29.54 68.60 2.03 46.17 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.10 -3.86 4.91 -19.86 -0.10 -3.96 16 19 C -0.12 -4.10 9.33 22.27 0.21 -3.89 16 20 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 21 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 22 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 23 C -0.13 -5.11 9.67 22.27 0.22 -4.89 16 24 C 0.11 2.42 4.75 45.69 0.22 2.63 16 25 C 0.03 0.84 8.15 72.30 0.59 1.43 16 26 O -0.39 -13.86 9.78 -125.29 -1.22 -15.08 16 27 C 0.01 0.35 8.62 72.30 0.62 0.97 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.07 1.53 6.36 -2.39 -0.02 1.51 16 32 H 0.12 1.42 7.96 -2.39 -0.02 1.40 16 33 H 0.40 14.43 6.33 -92.71 -0.59 13.84 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.12 3.84 7.71 -2.91 -0.02 3.81 16 38 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.11 4.17 8.04 -2.91 -0.02 4.15 16 42 H 0.15 1.73 7.97 -2.39 -0.02 1.71 16 43 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 1.90 7.40 -2.39 -0.02 1.88 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -77.13 377.30 3.56 -73.57 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.38 Total: 31.67 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.97 Total: -5.82 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.83 Total: -103.17 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.99 Total: -42.43 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -77.13 3.56 -73.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579923951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.358 kcal (2) G-P(sol) polarization free energy of solvation -77.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds