Wall clock time and date at job start Tue Mar 31 2020 12:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46969 * 2 1 4 4 C 1.34769 * 120.00003 * 269.99646 * 3 2 1 5 5 O 1.21290 * 120.00316 * 184.82780 * 4 3 2 6 6 C 1.50697 * 120.00163 * 4.83245 * 4 3 2 7 7 N 1.46903 * 109.47376 * 179.97438 * 6 4 3 8 8 C 1.47442 * 110.99561 * 69.87754 * 7 6 4 9 9 C 1.54316 * 107.23666 * 123.25974 * 8 7 6 10 10 C 1.55149 * 103.01798 * 22.27771 * 9 8 7 11 11 O 1.42896 * 110.98694 * 82.47754 * 10 9 8 12 12 C 1.50695 * 110.98994 * 206.25883 * 10 9 8 13 13 H 1.08000 * 120.00057 * 118.54865 * 12 10 9 14 14 C 1.37883 * 120.00210 * 298.54629 * 12 10 9 15 15 N 1.31517 * 119.99686 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00025 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47269 * 90.00144 * 16 14 12 18 18 H 1.48501 * 109.46820 * 209.99683 * 16 14 12 19 19 H 1.48500 * 109.47149 * 329.99658 * 16 14 12 20 20 C 1.47849 * 111.00121 * 190.71624 * 7 6 4 21 21 C 1.39927 * 119.99695 * 90.00058 * 3 2 1 22 22 C 1.38876 * 120.06670 * 247.42289 * 21 3 2 23 23 C 1.38118 * 119.92468 * 179.75275 * 22 21 3 24 24 C 1.38279 * 120.07306 * 0.52654 * 23 22 21 25 25 C 1.38281 * 120.14035 * 359.74574 * 24 23 22 26 26 C 1.38113 * 120.06984 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47203 * 300.00184 * 1 2 3 28 28 H 1.08993 * 109.46872 * 60.00370 * 1 2 3 29 29 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47203 * 239.99815 * 2 1 3 31 31 H 1.09005 * 109.46950 * 120.00043 * 2 1 3 32 32 H 1.08994 * 109.47229 * 300.00078 * 6 4 3 33 33 H 1.09003 * 109.46982 * 60.00014 * 6 4 3 34 34 H 1.09004 * 109.88637 * 242.66170 * 8 7 6 35 35 H 1.09004 * 109.89334 * 3.84744 * 8 7 6 36 36 H 1.08992 * 110.71286 * 140.66036 * 9 8 7 37 37 H 1.09002 * 110.70760 * 263.72861 * 9 8 7 38 38 H 0.96709 * 113.99991 * 61.45560 * 11 10 9 39 39 H 0.96998 * 119.99997 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.37265 * 332.47271 * 20 7 6 41 41 H 1.08999 * 110.37098 * 94.81057 * 20 7 6 42 42 H 1.07993 * 120.03707 * 0.02759 * 22 21 3 43 43 H 1.08000 * 119.95884 * 180.27847 * 23 22 21 44 44 H 1.07993 * 119.93050 * 179.76942 * 24 23 22 45 45 H 1.07998 * 119.96776 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.03723 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 -1.1671 5 8 2.7295 3.1276 -1.1691 6 6 1.8896 1.3466 -2.4699 7 7 2.2284 2.2385 -3.5870 8 6 3.6896 2.3665 -3.7364 9 6 4.0409 1.9410 -5.1775 10 6 2.7023 2.1393 -5.9366 11 8 2.5303 3.5043 -6.3228 12 6 2.6207 1.2280 -7.1340 13 1 1.8380 0.4864 -7.1958 14 6 3.5452 1.3409 -8.1507 15 7 4.4986 2.2437 -8.0751 16 14 3.4435 0.2118 -9.6352 17 1 2.5907 0.8390 -10.6768 18 1 4.8064 -0.0127 -10.1806 19 1 2.8526 -1.0885 -9.2286 20 6 1.6677 1.7323 -4.8580 21 6 2.2515 2.0408 1.2118 22 6 1.4543 3.1154 1.5837 23 6 1.6839 3.7611 2.7829 24 6 2.7129 3.3455 3.6078 25 6 3.5120 2.2794 3.2377 26 6 3.2841 1.6259 2.0426 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.4504 0.4167 -2.5641 33 1 0.8215 1.1303 -2.4892 34 1 3.9899 3.4013 -3.5717 35 1 4.1939 1.7139 -3.0237 36 1 4.8173 2.5845 -5.5911 37 1 4.3520 0.8967 -5.2061 38 1 3.2133 3.8321 -6.9239 39 1 5.1488 2.3234 -8.7905 40 1 1.5639 0.6479 -4.8217 41 1 0.7043 2.2001 -5.0606 42 1 0.6531 3.4431 0.9381 43 1 1.0614 4.5940 3.0748 44 1 2.8927 3.8544 4.5432 45 1 4.3152 1.9574 3.8839 46 1 3.9088 0.7935 1.7538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:31 Heat of formation + Delta-G solvation = -38.200572 kcal Electronic energy + Delta-G solvation = -27152.537640 eV Core-core repulsion = 23428.535508 eV Total energy + Delta-G solvation = -3724.002132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63776 -38.83332 -37.79415 -35.93670 -34.54903 -32.11490 -31.67543 -31.08782 -30.33663 -29.13298 -28.09096 -26.44152 -24.27110 -23.76991 -22.65812 -22.32305 -20.36749 -19.58795 -19.13869 -17.54123 -17.02970 -16.80877 -16.23274 -15.82805 -15.19968 -14.90570 -14.85517 -14.42340 -14.11848 -13.96583 -13.92525 -13.64195 -13.56729 -12.97472 -12.82418 -12.52590 -12.37299 -12.27810 -12.09144 -11.70950 -11.61052 -11.42470 -11.36236 -11.22035 -11.11364 -11.04313 -10.72692 -10.41692 -10.27000 -9.83214 -9.65281 -9.39863 -9.17889 -9.08799 -8.58650 -8.47874 -8.04629 -7.59058 -6.19665 -4.28429 1.12480 1.24824 2.75314 2.80803 3.22356 3.29588 3.31699 3.59682 4.28949 4.54731 4.66917 4.75236 4.78612 4.82212 4.94562 4.95232 5.08479 5.11357 5.24950 5.32888 5.38688 5.46001 5.47760 5.58772 5.63055 5.73855 5.85141 5.93620 5.96902 6.11123 6.17741 6.19911 6.34207 6.34824 6.48777 6.53687 6.69262 6.92484 6.95332 7.10826 7.23144 7.42604 7.51759 7.64387 7.70296 7.83652 8.17056 8.34472 8.73707 9.40301 9.55704 10.87201 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.002857 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.563046 B = 9798.926858 C =10166.640772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.584 5.584 4 C 0.517 3.483 5 O -0.497 6.497 6 C 0.036 3.964 7 N -0.511 5.511 8 C 0.055 3.945 9 C -0.146 4.146 10 C 0.253 3.747 11 O -0.578 6.578 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.071 3.929 15 N -0.893 5.893 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.059 3.941 21 C 0.153 3.847 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.377 0.623 39 H 0.266 0.734 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -5.002 21.092 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.317 5.317 4 C 0.306 3.694 5 O -0.368 6.368 6 C -0.096 4.096 7 N -0.235 5.235 8 C -0.072 4.072 9 C -0.185 4.185 10 C 0.213 3.787 11 O -0.385 6.385 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.067 4.067 21 C 0.062 3.938 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.226 0.774 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.868 -3.891 21.434 22.322 hybrid contribution 0.883 -1.509 -1.297 2.177 sum -3.985 -5.400 20.137 21.226 Atomic orbital electron populations 1.22231 0.95457 1.02555 1.02900 1.21671 0.94885 0.81468 1.03583 1.45733 1.67539 1.14559 1.03883 1.20980 0.77586 0.86273 0.84573 1.90731 1.40378 1.19115 1.86550 1.22202 1.02319 0.94867 0.90174 1.63388 1.12086 1.45173 1.02879 1.22785 0.86353 1.00824 0.97281 1.23301 1.01781 1.00547 0.92878 1.19497 0.88080 0.81081 0.90085 1.86153 1.55074 1.28454 1.68853 1.21524 1.13307 1.18425 1.04238 0.92104 1.25010 0.94536 0.95318 0.98267 1.69748 1.15795 1.34159 1.33499 0.86479 0.77337 0.80888 0.82575 1.20430 1.21145 1.19878 1.23039 0.99527 0.96798 0.87371 1.17577 0.94908 0.94626 0.86679 1.21282 0.99117 0.95927 0.96411 1.21042 0.98114 0.99585 0.94095 1.21155 0.95974 0.97307 0.99945 1.20997 0.99568 0.96158 0.96306 1.21226 0.96495 1.01368 0.95259 0.92217 0.91884 0.91173 0.89692 0.90205 0.92219 0.88320 0.91108 0.95235 0.90356 0.92737 0.77388 0.92368 0.93412 0.90873 0.85987 0.85772 0.85997 0.85819 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.98 16 2 C 0.11 0.94 5.85 -4.04 -0.02 0.92 16 3 N -0.58 -7.40 2.52 -113.45 -0.29 -7.69 16 4 C 0.52 8.46 7.17 -10.99 -0.08 8.38 16 5 O -0.50 -10.26 15.29 5.55 0.08 -10.18 16 6 C 0.04 0.57 3.69 -4.98 -0.02 0.56 16 7 N -0.51 -10.49 4.85 -232.69 -1.13 -11.62 16 8 C 0.05 1.19 5.65 -2.84 -0.02 1.17 16 9 C -0.15 -3.47 5.37 -24.90 -0.13 -3.60 16 10 C 0.25 6.37 0.87 -89.63 -0.08 6.29 16 11 O -0.58 -15.57 13.16 -35.23 -0.46 -16.04 16 12 C -0.54 -14.31 8.27 -34.44 -0.28 -14.59 16 13 H 0.06 1.59 7.79 -52.49 -0.41 1.19 16 14 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 15 N -0.89 -24.01 10.75 55.43 0.60 -23.42 16 16 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.06 1.29 5.86 -2.30 -0.01 1.28 16 21 C 0.15 1.94 4.76 -83.69 -0.40 1.54 16 22 C -0.11 -1.34 9.53 -39.39 -0.38 -1.71 16 23 C -0.11 -1.13 10.04 -39.61 -0.40 -1.53 16 24 C -0.13 -1.17 10.04 -39.55 -0.40 -1.57 16 25 C -0.11 -1.07 10.04 -39.61 -0.40 -1.46 16 26 C -0.12 -1.37 9.68 -39.39 -0.38 -1.75 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.56 6.95 -51.93 -0.36 0.20 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.70 6.47 -51.93 -0.34 0.36 16 31 H 0.08 0.58 7.85 -51.93 -0.41 0.18 16 32 H 0.06 0.86 7.08 -51.93 -0.37 0.50 16 33 H 0.10 1.35 6.88 -51.93 -0.36 0.99 16 34 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16 36 H 0.08 1.99 7.53 -51.93 -0.39 1.60 16 37 H 0.05 1.30 8.04 -51.93 -0.42 0.88 16 38 H 0.38 10.20 7.56 45.56 0.34 10.54 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 46 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -31.62 372.09 -9.74 -41.36 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.42 Total: 11.72 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.71 Total: -5.28 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.82 Total: -42.73 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.38 Total: -26.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.62 -9.74 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.158 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds