Wall clock time and date at job start Tue Mar 31 2020 12:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46969 * 2 1 4 4 C 1.34769 * 120.00003 * 269.99646 * 3 2 1 5 5 O 1.21290 * 120.00316 * 184.82780 * 4 3 2 6 6 C 1.50697 * 120.00163 * 4.83245 * 4 3 2 7 7 N 1.46903 * 109.47376 * 179.97438 * 6 4 3 8 8 C 1.47442 * 110.99561 * 69.87754 * 7 6 4 9 9 C 1.54316 * 107.23666 * 123.25974 * 8 7 6 10 10 C 1.55149 * 103.01798 * 22.27771 * 9 8 7 11 11 O 1.42896 * 110.98694 * 82.47754 * 10 9 8 12 12 C 1.50695 * 110.98994 * 206.25883 * 10 9 8 13 13 H 1.08000 * 120.00057 * 118.54865 * 12 10 9 14 14 C 1.37883 * 120.00210 * 298.54629 * 12 10 9 15 15 N 1.31517 * 119.99686 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00025 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47269 * 90.00144 * 16 14 12 18 18 H 1.48501 * 109.46820 * 209.99683 * 16 14 12 19 19 H 1.48500 * 109.47149 * 329.99658 * 16 14 12 20 20 C 1.47849 * 111.00121 * 190.71624 * 7 6 4 21 21 C 1.39927 * 119.99695 * 90.00058 * 3 2 1 22 22 C 1.38876 * 120.06670 * 247.42289 * 21 3 2 23 23 C 1.38118 * 119.92468 * 179.75275 * 22 21 3 24 24 C 1.38279 * 120.07306 * 0.52654 * 23 22 21 25 25 C 1.38281 * 120.14035 * 359.74574 * 24 23 22 26 26 C 1.38113 * 120.06984 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47203 * 300.00184 * 1 2 3 28 28 H 1.08993 * 109.46872 * 60.00370 * 1 2 3 29 29 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47203 * 239.99815 * 2 1 3 31 31 H 1.09005 * 109.46950 * 120.00043 * 2 1 3 32 32 H 1.08994 * 109.47229 * 300.00078 * 6 4 3 33 33 H 1.09003 * 109.46982 * 60.00014 * 6 4 3 34 34 H 1.09004 * 109.88637 * 242.66170 * 8 7 6 35 35 H 1.09004 * 109.89334 * 3.84744 * 8 7 6 36 36 H 1.08992 * 110.71286 * 140.66036 * 9 8 7 37 37 H 1.09002 * 110.70760 * 263.72861 * 9 8 7 38 38 H 0.96709 * 113.99991 * 61.45560 * 11 10 9 39 39 H 0.96998 * 119.99997 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.37265 * 332.47271 * 20 7 6 41 41 H 1.08999 * 110.37098 * 94.81057 * 20 7 6 42 42 H 1.07993 * 120.03707 * 0.02759 * 22 21 3 43 43 H 1.08000 * 119.95884 * 180.27847 * 23 22 21 44 44 H 1.07993 * 119.93050 * 179.76942 * 24 23 22 45 45 H 1.07998 * 119.96776 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.03723 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 -1.1671 5 8 2.7295 3.1276 -1.1691 6 6 1.8896 1.3466 -2.4699 7 7 2.2284 2.2385 -3.5870 8 6 3.6896 2.3665 -3.7364 9 6 4.0409 1.9410 -5.1775 10 6 2.7023 2.1393 -5.9366 11 8 2.5303 3.5043 -6.3228 12 6 2.6207 1.2280 -7.1340 13 1 1.8380 0.4864 -7.1958 14 6 3.5452 1.3409 -8.1507 15 7 4.4986 2.2437 -8.0751 16 14 3.4435 0.2118 -9.6352 17 1 2.5907 0.8390 -10.6768 18 1 4.8064 -0.0127 -10.1806 19 1 2.8526 -1.0885 -9.2286 20 6 1.6677 1.7323 -4.8580 21 6 2.2515 2.0408 1.2118 22 6 1.4543 3.1154 1.5837 23 6 1.6839 3.7611 2.7829 24 6 2.7129 3.3455 3.6078 25 6 3.5120 2.2794 3.2377 26 6 3.2841 1.6259 2.0426 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.4504 0.4167 -2.5641 33 1 0.8215 1.1303 -2.4892 34 1 3.9899 3.4013 -3.5717 35 1 4.1939 1.7139 -3.0237 36 1 4.8173 2.5845 -5.5911 37 1 4.3520 0.8967 -5.2061 38 1 3.2133 3.8321 -6.9239 39 1 5.1488 2.3234 -8.7905 40 1 1.5639 0.6479 -4.8217 41 1 0.7043 2.2001 -5.0606 42 1 0.6531 3.4431 0.9381 43 1 1.0614 4.5940 3.0748 44 1 2.8927 3.8544 4.5432 45 1 4.3152 1.9574 3.8839 46 1 3.9088 0.7935 1.7538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:29 Heat of formation + Delta-G solvation = -59.407108 kcal Electronic energy + Delta-G solvation = -27153.457225 eV Core-core repulsion = 23428.535508 eV Total energy + Delta-G solvation = -3724.921717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71931 -40.16873 -39.16627 -36.98532 -36.38511 -34.17266 -32.60731 -31.88977 -31.77198 -30.17524 -29.92397 -27.98149 -26.03887 -24.55439 -23.63339 -23.23116 -21.94793 -21.43780 -20.27419 -19.00421 -18.53624 -17.89925 -17.18969 -17.12507 -16.86005 -16.58088 -16.22553 -15.73648 -15.46125 -15.28396 -15.01175 -14.67621 -14.36289 -14.27680 -14.06296 -13.95814 -13.67357 -13.55616 -13.46214 -13.13142 -12.97849 -12.89462 -12.79385 -12.58782 -12.37239 -12.23201 -12.19159 -12.13301 -12.03159 -11.70115 -11.13519 -10.91048 -10.59669 -10.34194 -10.08064 -9.89628 -9.38164 -9.18473 -8.19723 -6.36387 0.29422 0.44004 1.42306 1.44394 1.53476 1.54657 1.80335 2.39497 2.79098 3.02917 3.12031 3.55679 3.94130 3.95945 3.99133 4.04596 4.04813 4.09343 4.24483 4.28915 4.30025 4.36163 4.42011 4.49223 4.54038 4.56900 4.65761 4.71217 4.88509 4.92664 4.96132 5.06933 5.07367 5.24616 5.32033 5.41482 5.45730 5.49759 5.53575 5.56766 5.66230 5.79272 5.91803 6.00547 6.14720 6.20998 6.30799 6.70240 7.16876 7.35102 7.44974 8.85787 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.002857 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.563046 B = 9798.926858 C =10166.640772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.573 5.573 4 C 0.517 3.483 5 O -0.552 6.552 6 C 0.037 3.963 7 N -0.527 5.527 8 C 0.071 3.929 9 C -0.135 4.135 10 C 0.233 3.767 11 O -0.590 6.590 12 C -0.557 4.557 13 H 0.062 0.938 14 C 0.027 3.973 15 N -0.913 5.913 16 Si 0.963 3.037 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.070 3.930 21 C 0.126 3.874 22 C -0.131 4.131 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.111 4.111 26 C -0.133 4.133 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.371 0.629 39 H 0.267 0.733 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.142 0.858 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -7.095 22.796 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.304 5.304 4 C 0.306 3.694 5 O -0.428 6.428 6 C -0.094 4.094 7 N -0.252 5.252 8 C -0.057 4.057 9 C -0.174 4.174 10 C 0.193 3.807 11 O -0.398 6.398 12 C -0.595 4.595 13 H 0.080 0.920 14 C -0.173 4.173 15 N -0.553 5.553 16 Si 0.788 3.212 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.057 4.057 21 C 0.036 3.964 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.160 0.840 44 H 0.170 0.830 45 H 0.170 0.830 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.219 -6.031 23.184 24.518 hybrid contribution 0.965 -0.847 -1.710 2.139 sum -4.254 -6.878 21.474 22.946 Atomic orbital electron populations 1.22187 0.94598 1.03805 1.02034 1.21996 0.95595 0.79531 1.05140 1.45702 1.66107 1.15570 1.02985 1.21039 0.77061 0.85663 0.85646 1.90709 1.43284 1.21387 1.87386 1.22308 1.04165 0.94640 0.88323 1.63214 1.11017 1.47306 1.03631 1.22514 0.87500 0.99588 0.96052 1.23104 1.00522 0.99696 0.94064 1.19823 0.89945 0.79979 0.90944 1.86151 1.55006 1.29838 1.68767 1.21796 1.13590 1.18896 1.05243 0.91989 1.25758 0.94173 0.96632 1.00774 1.69858 1.16134 1.35112 1.34147 0.85489 0.77254 0.79302 0.79133 1.20440 1.20879 1.18978 1.22900 0.98167 0.97798 0.86856 1.17830 0.96147 0.95450 0.86977 1.21340 0.99532 0.96747 0.97450 1.21325 0.98764 0.99850 0.93495 1.21546 0.94954 0.97005 1.00663 1.21389 0.99947 0.95640 0.95947 1.21424 0.96136 1.01993 0.95701 0.92888 0.92958 0.88801 0.88572 0.88215 0.89885 0.85836 0.93633 0.93603 0.92846 0.92931 0.78088 0.92323 0.91412 0.91416 0.87549 0.84029 0.83049 0.82997 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.10 1.52 5.85 86.38 0.50 2.02 16 3 N -0.57 -13.96 2.52 -631.25 -1.59 -15.56 16 4 C 0.52 16.71 7.17 87.66 0.63 17.34 16 5 O -0.55 -23.35 15.29 -3.06 -0.05 -23.40 16 6 C 0.04 1.11 3.69 85.56 0.32 1.42 16 7 N -0.53 -21.51 4.85 -890.09 -4.32 -25.83 16 8 C 0.07 3.11 5.65 86.65 0.49 3.60 16 9 C -0.13 -6.51 5.37 31.78 0.17 -6.34 16 10 C 0.23 11.86 0.87 -10.15 -0.01 11.85 16 11 O -0.59 -32.75 13.16 -148.98 -1.96 -34.71 16 12 C -0.56 -29.68 8.27 25.60 0.21 -29.46 16 13 H 0.06 3.21 7.79 -2.91 -0.02 3.18 16 14 C 0.03 1.44 5.29 84.66 0.45 1.88 16 15 N -0.91 -49.76 10.75 21.45 0.23 -49.53 16 16 Si 0.96 41.84 29.54 68.60 2.03 43.87 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 C 0.07 2.99 5.86 86.77 0.51 3.50 16 21 C 0.13 3.13 4.76 38.15 0.18 3.31 16 22 C -0.13 -3.28 9.53 22.39 0.21 -3.06 16 23 C -0.12 -2.27 10.04 22.25 0.22 -2.05 16 24 C -0.12 -2.00 10.04 22.29 0.22 -1.78 16 25 C -0.11 -1.83 10.04 22.25 0.22 -1.61 16 26 C -0.13 -2.73 9.68 22.39 0.22 -2.51 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.83 6.95 -2.39 -0.02 0.82 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.29 6.47 -2.39 -0.02 1.27 16 31 H 0.10 1.18 7.85 -2.38 -0.02 1.16 16 32 H 0.08 2.17 7.08 -2.39 -0.02 2.15 16 33 H 0.12 3.11 6.88 -2.39 -0.02 3.09 16 34 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.05 1.82 7.31 -2.38 -0.02 1.80 16 36 H 0.05 2.81 7.53 -2.39 -0.02 2.79 16 37 H 0.05 2.51 8.04 -2.39 -0.02 2.49 16 38 H 0.37 20.89 7.56 -74.05 -0.56 20.33 16 39 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.07 2.60 7.70 -2.39 -0.02 2.58 16 41 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -69.88 372.09 0.04 -69.84 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.42 Total: 38.77 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.29 Total: -3.45 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -5.68 Total: -90.91 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -2.01 Total: -58.11 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -69.88 0.04 -69.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.429 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds