Wall clock time and date at job start Tue Mar 31 2020 12:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47088 * 2 1 4 4 C 1.34777 * 120.00208 * 89.99287 * 3 2 1 5 5 O 1.21289 * 120.00333 * 175.17058 * 4 3 2 6 6 C 1.50704 * 119.99832 * 355.17855 * 4 3 2 7 7 N 1.46897 * 109.46965 * 179.97438 * 6 4 3 8 8 C 1.47841 * 111.00556 * 49.15205 * 7 6 4 9 9 C 1.54911 * 104.79741 * 146.36240 * 8 7 6 10 10 C 1.55388 * 101.74177 * 323.02168 * 9 8 7 11 11 O 1.42902 * 110.68254 * 277.17332 * 10 9 8 12 12 C 1.50706 * 110.84615 * 153.86054 * 10 9 8 13 13 H 1.07994 * 120.00190 * 246.46520 * 12 10 9 14 14 C 1.37879 * 119.99570 * 66.46257 * 12 10 9 15 15 N 1.31511 * 120.00368 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99708 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47163 * 60.00186 * 16 14 12 18 18 H 1.48499 * 109.47345 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47591 * 300.00521 * 16 14 12 20 20 C 1.47444 * 111.00001 * 169.99863 * 7 6 4 21 21 C 1.39923 * 120.00032 * 269.99921 * 3 2 1 22 22 C 1.38876 * 120.07215 * 112.06638 * 21 3 2 23 23 C 1.38117 * 119.92795 * 179.72000 * 22 21 3 24 24 C 1.38284 * 120.06824 * 0.57917 * 23 22 21 25 25 C 1.38285 * 120.14220 * 359.67532 * 24 23 22 26 26 C 1.38116 * 120.06963 * 0.04421 * 25 24 23 27 27 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47321 * 300.00574 * 1 2 3 29 29 H 1.09001 * 109.46605 * 60.00256 * 1 2 3 30 30 H 1.08991 * 109.47245 * 240.00194 * 2 1 3 31 31 H 1.08999 * 109.46840 * 119.99252 * 2 1 3 32 32 H 1.08994 * 109.47438 * 59.99591 * 6 4 3 33 33 H 1.09001 * 109.46833 * 299.99100 * 6 4 3 34 34 H 1.08997 * 110.37510 * 265.19712 * 8 7 6 35 35 H 1.09003 * 110.37219 * 27.53381 * 8 7 6 36 36 H 1.09000 * 110.98789 * 81.02869 * 9 8 7 37 37 H 1.09007 * 110.99035 * 204.79883 * 9 8 7 38 38 H 0.96706 * 113.99729 * 293.44617 * 11 10 9 39 39 H 0.96998 * 119.99988 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.89180 * 356.14347 * 20 7 6 41 41 H 1.09005 * 109.89143 * 117.17492 * 20 7 6 42 42 H 1.08002 * 120.03318 * 359.97438 * 22 21 3 43 43 H 1.07993 * 119.96362 * 180.30228 * 23 22 21 44 44 H 1.07996 * 119.92935 * 179.70173 * 24 23 22 45 45 H 1.08002 * 119.96386 * 180.02562 * 25 24 23 46 46 H 1.07991 * 120.03152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0166 1.1672 5 8 2.7295 3.1276 1.1691 6 6 1.8895 1.3466 2.4700 7 7 2.2291 2.2381 3.5870 8 6 1.6946 3.5979 3.3611 9 6 1.3295 4.1192 4.7735 10 6 0.7915 2.8313 5.4565 11 8 -0.5792 2.6143 5.1157 12 6 0.9650 2.9048 6.9518 13 1 1.6466 2.2313 7.4500 14 6 0.2537 3.8319 7.6836 15 7 -0.5766 4.6517 7.0769 16 14 0.4683 3.9224 9.5370 17 1 1.8866 4.2246 9.8570 18 1 -0.4012 4.9946 10.0842 19 1 0.0907 2.6205 10.1433 20 6 1.6845 1.7246 4.8573 21 6 2.2516 2.0408 -1.2118 22 6 1.4478 3.1088 -1.5887 23 6 1.6843 3.7614 -2.7827 24 6 2.7126 3.3449 -3.6082 25 6 3.5114 2.2784 -3.2382 26 6 3.2837 1.6253 -2.0427 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.4503 0.4168 2.5642 33 1 0.8213 1.1303 2.4892 34 1 2.4544 4.2337 2.9066 35 1 0.8064 3.5566 2.7306 36 1 2.2123 4.4938 5.2916 37 1 0.5566 4.8859 4.7190 38 1 -1.1828 3.2826 5.4683 39 1 -1.0767 5.3041 7.5918 40 1 1.0911 0.8294 4.6715 41 1 2.4993 1.4935 5.5436 42 1 0.6413 3.4312 -0.9468 43 1 1.0627 4.5951 -3.0741 44 1 2.8925 3.8537 -4.5436 45 1 4.3140 1.9557 -3.8849 46 1 3.9082 0.7928 -1.7542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:35 Heat of formation + Delta-G solvation = -37.002313 kcal Electronic energy + Delta-G solvation = -27409.696026 eV Core-core repulsion = 23685.745855 eV Total energy + Delta-G solvation = -3723.950172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68565 -38.89639 -37.72493 -35.97401 -34.50664 -32.05071 -31.65344 -31.07953 -30.41841 -29.12289 -28.03693 -26.35981 -24.21384 -23.75046 -22.63358 -22.27757 -20.40818 -19.45975 -19.28163 -17.53816 -17.15817 -16.67169 -16.23597 -15.84370 -15.16499 -14.92326 -14.84319 -14.42203 -14.01503 -13.92588 -13.86995 -13.58880 -13.41082 -13.13946 -12.87191 -12.69857 -12.42248 -12.19645 -11.83250 -11.70362 -11.50438 -11.41163 -11.36247 -11.22832 -11.19018 -10.86869 -10.52956 -10.48196 -10.30377 -9.87472 -9.47131 -9.38778 -9.22259 -9.07950 -8.59414 -8.47935 -8.03014 -7.61442 -6.18590 -4.25595 1.13163 1.25569 2.73036 2.81306 3.26465 3.31039 3.34044 3.60548 4.32456 4.58375 4.72023 4.73802 4.77940 4.81800 4.95877 5.00022 5.08033 5.16797 5.25969 5.34970 5.42106 5.50614 5.57651 5.61057 5.68774 5.78816 5.86192 6.04068 6.17742 6.20058 6.25246 6.34062 6.35448 6.35986 6.41701 6.49791 6.75204 6.96148 6.97844 7.17563 7.27188 7.46549 7.54460 7.69259 7.73376 7.85761 8.15597 8.32654 8.75278 9.41770 9.53322 10.88767 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.002983 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.896928 B = 9384.789163 C = 9703.357200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.582 5.582 4 C 0.518 3.482 5 O -0.502 6.502 6 C 0.036 3.964 7 N -0.517 5.517 8 C 0.054 3.946 9 C -0.135 4.135 10 C 0.237 3.763 11 O -0.594 6.594 12 C -0.531 4.531 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.057 3.943 21 C 0.153 3.847 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.123 4.123 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.384 0.616 39 H 0.268 0.732 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -7.880 -19.492 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.315 5.315 4 C 0.307 3.693 5 O -0.375 6.375 6 C -0.095 4.095 7 N -0.242 5.242 8 C -0.073 4.073 9 C -0.174 4.174 10 C 0.196 3.804 11 O -0.404 6.404 12 C -0.570 4.570 13 H 0.080 0.920 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.729 3.271 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.070 4.070 21 C 0.062 3.938 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.143 4.143 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.186 -7.637 -19.667 21.509 hybrid contribution -1.110 0.490 1.213 1.716 sum 3.075 -7.147 -18.454 20.027 Atomic orbital electron populations 1.22242 0.95402 1.02634 1.03024 1.21676 0.94933 0.81361 1.03534 1.45713 1.67274 1.14620 1.03858 1.20974 0.77390 0.86148 0.84747 1.90723 1.40956 1.19278 1.86500 1.22280 1.00526 0.97532 0.89173 1.63713 1.57346 1.02374 1.00721 1.23090 0.96945 0.89290 0.97969 1.23274 1.00794 1.00222 0.93114 1.19747 0.79463 0.88765 0.92376 1.86043 1.19207 1.56131 1.79046 1.21559 1.25105 1.18271 0.92042 0.91962 1.25012 0.94547 0.94553 0.99126 1.69583 1.27134 1.21023 1.36196 0.86506 0.78214 0.77712 0.84676 1.20080 1.21212 1.20134 1.22914 0.96962 0.97629 0.89483 1.17570 0.94889 0.94668 0.86659 1.21302 0.99005 0.95990 0.96501 1.21048 0.98079 0.99509 0.94124 1.21159 0.96003 0.97310 0.99891 1.20996 0.99571 0.96180 0.96304 1.21212 0.96566 1.01307 0.95195 0.91126 0.91761 0.92260 0.90175 0.89628 0.88565 0.91507 0.90145 0.95488 0.91871 0.91091 0.76426 0.92247 0.93484 0.89921 0.86037 0.85749 0.85989 0.85815 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.11 0.99 5.85 -4.04 -0.02 0.97 16 3 N -0.58 -7.54 2.52 -113.46 -0.29 -7.82 16 4 C 0.52 8.56 7.05 -10.98 -0.08 8.49 16 5 O -0.50 -10.17 13.31 5.55 0.07 -10.09 16 6 C 0.04 0.59 3.98 -4.98 -0.02 0.57 16 7 N -0.52 -10.57 5.21 -232.69 -1.21 -11.78 16 8 C 0.05 1.20 4.94 -2.30 -0.01 1.18 16 9 C -0.14 -3.31 5.68 -24.46 -0.14 -3.45 16 10 C 0.24 5.98 0.86 -89.81 -0.08 5.90 16 11 O -0.59 -15.54 13.09 -35.23 -0.46 -16.00 16 12 C -0.53 -14.37 8.22 -34.44 -0.28 -14.65 16 13 H 0.06 1.66 7.53 -52.49 -0.40 1.26 16 14 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 15 N -0.90 -24.37 10.72 55.43 0.59 -23.77 16 16 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.06 1.25 6.22 -2.83 -0.02 1.24 16 21 C 0.15 1.97 4.75 -83.69 -0.40 1.57 16 22 C -0.11 -1.40 9.55 -39.39 -0.38 -1.77 16 23 C -0.11 -1.17 10.04 -39.61 -0.40 -1.56 16 24 C -0.13 -1.19 10.04 -39.55 -0.40 -1.58 16 25 C -0.11 -1.06 10.04 -39.61 -0.40 -1.46 16 26 C -0.12 -1.36 9.68 -39.39 -0.38 -1.74 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.70 6.95 -51.93 -0.36 0.34 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.59 7.85 -51.93 -0.41 0.19 16 31 H 0.09 0.70 6.47 -51.93 -0.34 0.37 16 32 H 0.10 1.31 7.26 -51.93 -0.38 0.94 16 33 H 0.07 1.09 6.76 -51.93 -0.35 0.74 16 34 H 0.08 1.83 6.71 -51.93 -0.35 1.48 16 35 H 0.03 0.60 7.54 -51.93 -0.39 0.21 16 36 H 0.06 1.60 8.04 -51.93 -0.42 1.18 16 37 H 0.07 1.83 7.79 -51.93 -0.40 1.43 16 38 H 0.38 10.33 6.99 45.56 0.32 10.65 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 0.98 7.42 -51.93 -0.39 0.59 16 41 H 0.08 1.80 7.63 -51.93 -0.40 1.40 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -30.98 367.94 -9.83 -40.81 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.35 Total: 13.03 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.71 Total: -5.75 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.90 Total: -43.38 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.39 Total: -26.10 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.98 -9.83 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.806 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds