Wall clock time and date at job start Tue Mar 31 2020 12:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 120.00117 * 2 1 4 4 H 1.09000 * 109.47316 * 245.00435 * 3 2 1 5 5 C 1.53000 * 109.47132 * 124.99876 * 3 2 1 6 6 O 1.42901 * 109.46984 * 305.00397 * 5 3 2 7 7 N 1.46905 * 109.46731 * 5.00254 * 3 2 1 8 8 C 1.46901 * 110.99612 * 275.00010 * 7 3 2 9 9 H 1.08998 * 109.47624 * 34.99902 * 8 7 3 10 10 C 1.52999 * 109.46995 * 274.99880 * 8 7 3 11 11 C 1.50705 * 109.47006 * 155.00445 * 8 7 3 12 12 O 1.21280 * 119.99928 * 6.58062 * 11 8 7 13 13 N 1.34780 * 119.99790 * 186.59032 * 11 8 7 14 14 C 1.46501 * 120.00084 * 5.93425 * 13 11 8 15 15 C 1.50694 * 109.47016 * 86.64942 * 14 13 11 16 16 H 1.07999 * 120.00589 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99580 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99704 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00182 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47398 * 90.00108 * 19 17 15 21 21 H 1.48503 * 109.46819 * 209.99921 * 19 17 15 22 22 H 1.48495 * 109.47181 * 329.99662 * 19 17 15 23 23 C 1.39923 * 119.99889 * 185.93389 * 13 11 8 24 24 C 1.38879 * 120.06968 * 7.70607 * 23 13 11 25 25 C 1.38110 * 119.92621 * 179.78778 * 24 23 13 26 26 C 1.38276 * 120.07147 * 0.48752 * 25 24 23 27 27 C 1.38279 * 120.14301 * 359.74317 * 26 25 24 28 28 C 1.38111 * 120.06969 * 0.02562 * 27 26 25 29 29 H 1.08005 * 119.99403 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.00167 * 359.72636 * 1 2 3 31 31 H 1.08001 * 120.00477 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47269 * 65.00365 * 5 3 2 33 33 H 1.08999 * 109.46976 * 185.00911 * 5 3 2 34 34 H 0.96704 * 114.00141 * 180.02562 * 6 5 3 35 35 H 1.00899 * 110.99988 * 38.95205 * 7 3 2 36 36 H 1.09001 * 109.47440 * 306.13654 * 10 8 7 37 37 H 1.09003 * 109.47211 * 66.13289 * 10 8 7 38 38 H 1.09001 * 109.47543 * 186.13326 * 10 8 7 39 39 H 1.09004 * 109.46845 * 206.64910 * 14 13 11 40 40 H 1.09001 * 109.46737 * 326.64661 * 14 13 11 41 41 H 0.96990 * 119.99597 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03271 * 0.02562 * 24 23 13 43 43 H 1.08007 * 119.95820 * 180.23132 * 25 24 23 44 44 H 1.08004 * 119.92709 * 179.72149 * 26 25 24 45 45 H 1.08005 * 119.96439 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.03612 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 1 2.6213 1.4027 -0.9314 5 6 3.0351 1.3331 1.1816 6 8 2.3182 1.0890 2.3935 7 7 1.1134 2.4191 0.1208 8 6 0.5791 2.8000 -1.1935 9 1 0.4708 1.9101 -1.8136 10 6 1.5402 3.7793 -1.8704 11 6 -0.7659 3.4566 -1.0178 12 8 -1.1802 3.7020 0.0953 13 7 -1.5085 3.7711 -2.0978 14 6 -1.0700 3.3590 -3.4335 15 6 -1.5699 1.9663 -3.7189 16 1 -2.1554 1.4405 -2.9792 17 6 -1.2799 1.3634 -4.9245 18 7 -1.7158 0.1477 -5.1734 19 14 -0.2667 2.2724 -6.2036 20 1 1.1739 1.9795 -5.9937 21 1 -0.6695 1.8272 -7.5619 22 1 -0.4991 3.7332 -6.0724 23 6 -2.6982 4.4911 -1.9432 24 6 -3.0353 5.0203 -0.7042 25 6 -4.2083 5.7343 -0.5560 26 6 -5.0515 5.9138 -1.6371 27 6 -4.7210 5.3841 -2.8709 28 6 -3.5472 4.6732 -3.0269 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9352 0.0045 31 1 1.8501 -0.9353 0.0004 32 1 3.7937 0.5622 1.0466 33 1 3.5152 2.3103 1.2342 34 1 2.8725 1.0926 3.1859 35 1 0.3683 2.1909 0.7617 36 1 1.7337 4.6188 -1.2025 37 1 2.4777 3.2711 -2.0960 38 1 1.0940 4.1459 -2.7949 39 1 -1.4712 4.0484 -4.1764 40 1 0.0191 3.3703 -3.4779 41 1 -1.5121 -0.2763 -6.0216 42 1 -2.3791 4.8769 0.1414 43 1 -4.4691 6.1492 0.4065 44 1 -5.9703 6.4687 -1.5175 45 1 -5.3816 5.5264 -3.7135 46 1 -3.2899 4.2594 -3.9907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595863709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:28 Heat of formation + Delta-G solvation = -21.040391 kcal Electronic energy + Delta-G solvation = -27946.925162 eV Core-core repulsion = 24223.667151 eV Total energy + Delta-G solvation = -3723.258011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06054 -39.86975 -38.82274 -37.11869 -36.77375 -34.65224 -34.14722 -31.82627 -31.45017 -30.53085 -29.57490 -28.92835 -25.56525 -24.72838 -23.76314 -23.32024 -22.35080 -20.52784 -20.18650 -19.18934 -18.57919 -18.29350 -18.09457 -17.33390 -17.10309 -16.35716 -16.26925 -16.15142 -15.88165 -15.17467 -15.08053 -14.84988 -14.50607 -14.47136 -14.35159 -14.16188 -13.92131 -13.80792 -13.51160 -13.19455 -13.04823 -12.95631 -12.69293 -12.48858 -12.40022 -12.26572 -12.19193 -11.96996 -11.89011 -11.72657 -10.95334 -10.82274 -10.77486 -10.40598 -10.28658 -9.79499 -9.54069 -8.76467 -8.34508 -6.43623 0.37550 0.54916 1.31246 1.35831 1.38221 1.47208 1.57538 1.93410 2.29526 2.97552 3.00885 3.06440 3.35903 3.53377 3.86967 4.06726 4.09046 4.15284 4.18424 4.24874 4.33939 4.37906 4.44635 4.53713 4.57485 4.62000 4.65408 4.72507 4.78573 4.81868 4.83339 4.85439 4.97562 5.20973 5.22134 5.35214 5.38619 5.52628 5.57917 5.64797 5.68402 5.73577 5.96286 6.07516 6.24070 6.27354 6.45162 6.60342 7.03216 7.06898 7.21088 8.81723 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.005892 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.727798 B = 4751.389460 C = 6761.967455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.102 3.898 4 H 0.115 0.885 5 C 0.101 3.899 6 O -0.589 6.589 7 N -0.656 5.656 8 C 0.069 3.931 9 H 0.070 0.930 10 C -0.139 4.139 11 C 0.513 3.487 12 O -0.549 6.549 13 N -0.535 5.535 14 C 0.198 3.802 15 C -0.539 4.539 16 H 0.022 0.978 17 C 0.027 3.973 18 N -0.937 5.937 19 Si 0.933 3.067 20 H -0.252 1.252 21 H -0.283 1.283 22 H -0.238 1.238 23 C 0.136 3.864 24 C -0.190 4.190 25 C -0.104 4.104 26 C -0.148 4.148 27 C -0.101 4.101 28 C -0.168 4.168 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.393 0.607 35 H 0.348 0.652 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.270 0.730 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.147 0.853 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.411 7.876 7.061 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.179 4.179 3 C -0.008 4.008 4 H 0.133 0.867 5 C 0.023 3.977 6 O -0.397 6.397 7 N -0.291 5.291 8 C -0.044 4.044 9 H 0.087 0.913 10 C -0.196 4.196 11 C 0.304 3.696 12 O -0.429 6.429 13 N -0.254 5.254 14 C 0.077 3.923 15 C -0.577 4.577 16 H 0.040 0.960 17 C -0.173 4.173 18 N -0.575 5.575 19 Si 0.754 3.246 20 H -0.176 1.176 21 H -0.209 1.209 22 H -0.162 1.162 23 C 0.041 3.959 24 C -0.210 4.210 25 C -0.123 4.123 26 C -0.167 4.167 27 C -0.119 4.119 28 C -0.188 4.188 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.171 0.829 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.174 0.826 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.165 0.835 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.264 8.270 7.080 13.668 hybrid contribution -0.409 -1.324 -0.696 1.551 sum 7.855 6.945 6.383 12.275 Atomic orbital electron populations 1.23708 0.97236 1.01026 1.03165 1.23684 0.95687 1.00497 0.98025 1.21153 0.93944 0.85817 0.99862 0.86714 1.22109 0.91979 1.00699 0.82948 1.86525 1.40411 1.95244 1.17542 1.60743 1.21353 1.39305 1.07735 1.21508 0.90530 0.99165 0.93154 0.91264 1.21956 0.98970 0.98849 0.99870 1.21175 0.87292 0.77861 0.83274 1.90333 1.72440 1.54469 1.25682 1.45631 1.20271 1.50155 1.09334 1.20202 0.97756 0.94891 0.79405 1.21230 1.34995 0.99407 1.02092 0.96010 1.25722 0.96395 0.95266 0.99905 1.70050 1.46771 1.15418 1.25276 0.85935 0.80035 0.80619 0.78005 1.17587 1.20885 1.16160 1.18406 0.87482 0.94338 0.95672 1.22430 1.00395 1.00509 0.97680 1.21388 0.93423 0.97446 1.00015 1.21428 1.01008 1.01910 0.92355 1.21250 0.95282 0.96483 0.98923 1.21125 0.96112 1.03232 0.98363 0.88663 0.91162 0.85173 0.90776 0.91751 0.75802 0.82943 0.90927 0.89122 0.91333 0.93178 0.91115 0.92103 0.82600 0.83708 0.82939 0.83488 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.86 13.01 67.78 0.88 -6.98 16 2 C -0.16 -4.80 8.87 25.65 0.23 -4.57 16 3 C 0.10 2.71 2.75 44.17 0.12 2.83 16 4 H 0.12 2.71 7.17 -2.39 -0.02 2.69 16 5 C 0.10 1.99 6.87 71.98 0.49 2.49 16 6 O -0.59 -13.28 13.09 -148.98 -1.95 -15.23 16 7 N -0.66 -21.31 5.66 -477.13 -2.70 -24.01 16 8 C 0.07 2.48 1.09 44.17 0.05 2.52 16 9 H 0.07 2.84 6.44 -2.39 -0.02 2.82 16 10 C -0.14 -4.00 8.96 71.98 0.64 -3.36 16 11 C 0.51 21.62 6.46 87.66 0.57 22.18 16 12 O -0.55 -24.56 12.25 -3.03 -0.04 -24.60 16 13 N -0.53 -23.27 2.69 -635.30 -1.71 -24.97 16 14 C 0.20 8.69 3.05 85.63 0.26 8.95 16 15 C -0.54 -28.95 9.55 25.60 0.24 -28.70 16 16 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 17 C 0.03 1.44 5.47 84.65 0.46 1.90 16 18 N -0.94 -55.13 13.96 21.45 0.30 -54.83 16 19 Si 0.93 38.61 27.47 68.60 1.88 40.49 16 20 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 23 C 0.14 5.75 6.48 38.15 0.25 6.00 16 24 C -0.19 -7.47 8.97 22.39 0.20 -7.27 16 25 C -0.10 -3.27 10.04 22.25 0.22 -3.05 16 26 C -0.15 -4.17 10.04 22.29 0.22 -3.95 16 27 C -0.10 -3.17 10.04 22.25 0.22 -2.95 16 28 C -0.17 -6.58 9.15 22.39 0.20 -6.38 16 29 H 0.09 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.07 2.95 4.91 -2.91 -0.01 2.94 16 31 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.39 4.89 9.12 -74.05 -0.68 4.21 16 35 H 0.35 13.18 5.51 -89.69 -0.49 12.69 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.11 7.51 -2.39 -0.02 2.09 16 38 H 0.07 2.03 5.33 -2.39 -0.01 2.01 16 39 H 0.05 2.14 5.44 -2.38 -0.01 2.13 16 40 H 0.07 2.81 3.63 -2.39 -0.01 2.80 16 41 H 0.27 14.79 8.31 -92.72 -0.77 14.02 16 42 H 0.16 6.58 4.73 -44.94 -0.21 6.36 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 44 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 46 H 0.12 4.94 6.31 -2.91 -0.02 4.92 16 Total: -1.00 -70.29 363.88 0.66 -69.63 By element: Atomic # 1 Polarization: 54.23 SS G_CDS: -0.40 Total: 53.83 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.28 Total: -20.31 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -4.11 Total: -103.81 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.99 Total: -39.83 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.88 Total: 40.49 kcal Total: -70.29 0.66 -69.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595863709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.594 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds