Wall clock time and date at job start Tue Mar 31 2020 12:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00402 * 2 1 4 4 N 1.46503 * 109.46908 * 124.99900 * 3 2 1 5 5 C 1.34777 * 120.00008 * 84.10286 * 4 3 2 6 6 O 1.21585 * 119.99845 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00045 * 359.97438 * 5 4 3 8 8 C 1.39950 * 120.00295 * 184.56832 * 7 5 4 9 9 C 1.39290 * 119.94891 * 144.32316 * 8 7 5 10 10 C 1.38485 * 120.42946 * 179.97438 * 9 8 7 11 11 C 1.37686 * 120.32111 * 0.02562 * 10 9 8 12 12 C 1.40740 * 119.88692 * 359.97438 * 11 10 9 13 13 C 1.41397 * 120.21090 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99875 * 144.62604 * 13 12 11 15 15 C 1.39926 * 120.00651 * 324.62829 * 13 12 11 16 16 N 1.30838 * 119.99739 * 358.09726 * 15 13 12 17 17 Si 1.86793 * 120.00669 * 178.09751 * 15 13 12 18 18 H 1.48500 * 109.47186 * 94.99583 * 17 15 13 19 19 H 1.48505 * 109.47365 * 214.99511 * 17 15 13 20 20 H 1.48503 * 109.47084 * 334.99570 * 17 15 13 21 21 C 1.38234 * 119.94577 * 324.05051 * 8 7 5 22 22 C 1.46505 * 119.99993 * 264.10393 * 4 3 2 23 23 H 1.09002 * 109.46730 * 173.42258 * 22 4 3 24 24 C 1.52997 * 109.47306 * 53.42232 * 22 4 3 25 25 C 1.52997 * 109.47036 * 293.42066 * 22 4 3 26 26 O 1.42902 * 109.47328 * 65.90006 * 25 22 4 27 27 C 1.42900 * 114.00257 * 179.97438 * 26 25 22 28 28 H 1.07999 * 119.99475 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00407 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99475 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46563 * 5.00289 * 3 2 1 32 32 H 1.08998 * 109.47498 * 244.99911 * 3 2 1 33 33 H 0.97002 * 119.99940 * 4.57090 * 7 5 4 34 34 H 1.07997 * 119.78235 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.83701 * 180.02562 * 10 9 8 36 36 H 1.07997 * 120.05170 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00001 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.16083 * 0.02785 * 21 8 7 39 39 H 1.09008 * 109.47109 * 300.00155 * 24 22 4 40 40 H 1.08997 * 109.47304 * 59.99575 * 24 22 4 41 41 H 1.09001 * 109.47296 * 180.02562 * 24 22 4 42 42 H 1.08998 * 109.47210 * 185.90153 * 25 22 4 43 43 H 1.09006 * 109.47299 * 305.90152 * 25 22 4 44 44 H 1.08997 * 109.47304 * 300.00400 * 27 26 25 45 45 H 1.09000 * 109.46958 * 60.00181 * 27 26 25 46 46 H 1.08996 * 109.47349 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 4.2087 0.7590 1.0188 6 8 4.9805 0.7808 1.9580 7 7 4.5675 0.1614 -0.1347 8 6 5.7891 -0.5159 -0.2214 9 6 5.8891 -1.6744 -0.9884 10 6 7.0931 -2.3521 -1.0815 11 6 8.2054 -1.8880 -0.4159 12 6 8.1196 -0.7188 0.3629 13 6 9.2574 -0.2363 1.0498 14 1 9.4153 0.8271 1.1528 15 6 10.1789 -1.1365 1.5961 16 7 9.9686 -2.4246 1.5038 17 14 11.7092 -0.4995 2.4572 18 1 11.4576 -0.4191 3.9186 19 1 12.8428 -1.4237 2.2003 20 1 12.0438 0.8508 1.9375 21 6 6.8961 -0.0311 0.4498 22 6 2.6036 1.9809 2.3855 23 1 3.3680 1.8003 3.1413 24 6 1.2683 1.4066 2.8631 25 6 2.4584 3.4867 2.1566 26 8 1.3648 3.7305 1.2696 27 6 1.1414 5.1136 0.9886 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9313 33 1 3.9791 0.2006 -0.9048 34 1 5.0222 -2.0459 -1.5144 35 1 7.1600 -3.2492 -1.6793 36 1 9.1421 -2.4202 -0.4912 37 1 10.6076 -3.0487 1.8821 38 1 6.8206 0.8693 1.0415 39 1 0.5039 1.5871 2.1073 40 1 1.3717 0.3339 3.0262 41 1 0.9777 1.8899 3.7959 42 1 2.2712 3.9826 3.1090 43 1 3.3763 3.8777 1.7176 44 1 0.9268 5.6430 1.9169 45 1 2.0320 5.5387 0.5256 46 1 0.2950 5.2143 0.3093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596929532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:50 Heat of formation + Delta-G solvation = -20.909397 kcal Electronic energy + Delta-G solvation = -27101.934668 eV Core-core repulsion = 23378.682337 eV Total energy + Delta-G solvation = -3723.252331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.36400 -38.45586 -37.30138 -36.05160 -34.55690 -33.52867 -32.88413 -31.21157 -29.70919 -27.79503 -27.51378 -26.35200 -25.51363 -25.17707 -22.44040 -20.91066 -20.50502 -20.25452 -19.00925 -18.14126 -17.28414 -16.65309 -16.26492 -15.92473 -15.43870 -15.22739 -14.93668 -14.79051 -14.55488 -14.20015 -13.71213 -13.43410 -13.12369 -12.99637 -12.82224 -12.63334 -12.35978 -12.26531 -12.02513 -11.87844 -11.64142 -11.30412 -11.27083 -11.15988 -11.06353 -11.04461 -10.55692 -10.43113 -10.09063 -9.86538 -9.70764 -9.48522 -9.40360 -9.04189 -8.82733 -8.51300 -7.27411 -6.78451 -6.51744 -4.27239 2.08935 2.80534 2.93557 3.07398 3.16662 3.21942 3.26520 3.53578 3.76453 4.07806 4.29649 4.77316 4.80160 4.86338 4.99530 5.03935 5.12474 5.15294 5.23337 5.27692 5.37108 5.41083 5.51512 5.63338 5.73897 5.75863 5.93702 5.98580 6.22419 6.28787 6.44050 6.46342 6.53210 6.73528 6.84219 6.88347 7.00733 7.12155 7.20706 7.33680 7.41418 7.77139 7.86946 8.05203 8.20690 8.35066 8.47574 8.76932 8.99919 9.07463 9.12800 10.42729 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.003349 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.301050 B = 8358.308330 C = 9394.779147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.129 3.871 4 N -0.619 5.619 5 C 0.699 3.301 6 O -0.565 6.565 7 N -0.680 5.680 8 C 0.159 3.841 9 C -0.251 4.251 10 C -0.098 4.098 11 C -0.159 4.159 12 C 0.118 3.882 13 C -0.463 4.463 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.813 5.813 17 Si 0.912 3.088 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.197 4.197 22 C 0.159 3.841 23 H 0.115 0.885 24 C -0.155 4.155 25 C 0.050 3.950 26 O -0.386 6.386 27 C 0.030 3.970 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.276 0.724 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.040 0.960 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 9.601 -1.864 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.007 3.993 4 N -0.357 5.357 5 C 0.401 3.599 6 O -0.441 6.441 7 N -0.327 5.327 8 C 0.067 3.933 9 C -0.272 4.272 10 C -0.117 4.117 11 C -0.179 4.179 12 C 0.115 3.885 13 C -0.494 4.494 14 H 0.092 0.908 15 C -0.143 4.143 16 N -0.441 5.441 17 Si 0.738 3.262 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.219 4.219 22 C 0.055 3.945 23 H 0.133 0.867 24 C -0.213 4.213 25 C -0.027 4.027 26 O -0.305 6.305 27 C -0.067 4.067 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.519 9.270 -1.148 19.854 hybrid contribution 0.399 0.297 0.150 0.520 sum -17.120 9.567 -0.997 19.637 Atomic orbital electron populations 1.23793 0.95682 1.01707 1.00667 1.23484 0.96494 0.99248 0.99671 1.20820 0.93129 0.96517 0.88872 1.47156 1.14131 1.60075 1.14314 1.15994 0.81634 0.78727 0.83514 1.90966 1.50957 1.63450 1.38697 1.42691 1.21323 1.56225 1.12455 1.17280 0.83091 0.92425 1.00522 1.20086 0.98052 0.98301 1.10769 1.20486 0.93257 0.98081 0.99916 1.21418 0.97873 0.99960 0.98659 1.17536 0.91278 0.91041 0.88657 1.19475 1.04686 0.94201 1.31081 0.90753 1.25816 0.98576 0.94555 0.95307 1.69782 1.34654 1.02265 1.37381 0.86238 0.80531 0.79593 0.79882 1.19721 1.20334 1.18717 1.21240 0.90949 1.03986 1.05721 1.20995 0.98241 0.88822 0.86488 0.86725 1.22079 0.96784 1.01182 1.01293 1.23080 0.89514 0.96883 0.93266 1.87812 1.51709 1.24323 1.66648 1.22729 1.01025 0.82852 1.00075 0.88424 0.88635 0.87374 0.87041 0.90975 0.77103 0.89375 0.89022 0.86231 0.91304 0.86916 0.91243 0.92290 0.91973 0.92278 0.92618 0.94208 0.94115 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 13.50 29.01 0.39 -1.24 16 2 C -0.17 -1.84 8.93 -36.03 -0.32 -2.16 16 3 C 0.13 1.46 4.63 -5.19 -0.02 1.44 16 4 N -0.62 -8.86 2.37 -173.17 -0.41 -9.28 16 5 C 0.70 13.42 8.06 -86.92 -0.70 12.71 16 6 O -0.57 -13.41 13.17 5.29 0.07 -13.34 16 7 N -0.68 -12.82 5.21 -14.27 -0.07 -12.89 16 8 C 0.16 3.71 6.28 -83.76 -0.53 3.18 16 9 C -0.25 -5.62 9.97 -39.10 -0.39 -6.01 16 10 C -0.10 -2.34 10.02 -39.69 -0.40 -2.73 16 11 C -0.16 -4.27 8.63 -38.84 -0.34 -4.60 16 12 C 0.12 3.31 5.51 -106.85 -0.59 2.72 16 13 C -0.46 -13.08 9.04 -37.75 -0.34 -13.42 16 14 H 0.07 2.04 7.85 -52.48 -0.41 1.63 16 15 C 0.07 1.92 5.36 -17.34 -0.09 1.83 16 16 N -0.81 -22.25 10.88 55.55 0.60 -21.65 16 17 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.20 -5.26 8.43 -38.68 -0.33 -5.58 16 22 C 0.16 2.01 3.15 -67.93 -0.21 1.80 16 23 H 0.11 1.69 6.93 -51.93 -0.36 1.33 16 24 C -0.16 -1.65 8.37 37.16 0.31 -1.34 16 25 C 0.05 0.53 5.74 37.16 0.21 0.74 16 26 O -0.39 -3.73 6.99 -35.23 -0.25 -3.98 16 27 C 0.03 0.21 11.01 101.05 1.11 1.32 16 28 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 29 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.16 4.62 -51.93 -0.24 0.92 16 32 H 0.07 0.78 6.62 -51.93 -0.34 0.44 16 33 H 0.39 6.04 6.60 -40.82 -0.27 5.77 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.12 3.30 6.42 -52.49 -0.34 2.96 16 37 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 38 H 0.11 3.12 6.28 -52.48 -0.33 2.79 16 39 H 0.07 0.71 5.71 -51.92 -0.30 0.41 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -31.95 372.48 -8.48 -40.43 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.78 Total: 11.47 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.23 Total: -11.34 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.12 Total: -43.82 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.18 Total: -17.31 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.95 -8.48 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596929532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.524 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds