Wall clock time and date at job start Tue Mar 31 2020 12:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00402 * 2 1 4 4 N 1.46503 * 109.46908 * 124.99900 * 3 2 1 5 5 C 1.34777 * 120.00008 * 84.10286 * 4 3 2 6 6 O 1.21585 * 119.99845 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00045 * 359.97438 * 5 4 3 8 8 C 1.39950 * 120.00295 * 184.56832 * 7 5 4 9 9 C 1.39290 * 119.94891 * 144.32316 * 8 7 5 10 10 C 1.38485 * 120.42946 * 179.97438 * 9 8 7 11 11 C 1.37686 * 120.32111 * 0.02562 * 10 9 8 12 12 C 1.40740 * 119.88692 * 359.97438 * 11 10 9 13 13 C 1.41397 * 120.21090 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99875 * 144.62604 * 13 12 11 15 15 C 1.39926 * 120.00651 * 324.62829 * 13 12 11 16 16 N 1.30838 * 119.99739 * 358.09726 * 15 13 12 17 17 Si 1.86793 * 120.00669 * 178.09751 * 15 13 12 18 18 H 1.48500 * 109.47186 * 94.99583 * 17 15 13 19 19 H 1.48505 * 109.47365 * 214.99511 * 17 15 13 20 20 H 1.48503 * 109.47084 * 334.99570 * 17 15 13 21 21 C 1.38234 * 119.94577 * 324.05051 * 8 7 5 22 22 C 1.46505 * 119.99993 * 264.10393 * 4 3 2 23 23 H 1.09002 * 109.46730 * 173.42258 * 22 4 3 24 24 C 1.52997 * 109.47306 * 53.42232 * 22 4 3 25 25 C 1.52997 * 109.47036 * 293.42066 * 22 4 3 26 26 O 1.42902 * 109.47328 * 65.90006 * 25 22 4 27 27 C 1.42900 * 114.00257 * 179.97438 * 26 25 22 28 28 H 1.07999 * 119.99475 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00407 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99475 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46563 * 5.00289 * 3 2 1 32 32 H 1.08998 * 109.47498 * 244.99911 * 3 2 1 33 33 H 0.97002 * 119.99940 * 4.57090 * 7 5 4 34 34 H 1.07997 * 119.78235 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.83701 * 180.02562 * 10 9 8 36 36 H 1.07997 * 120.05170 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00001 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.16083 * 0.02785 * 21 8 7 39 39 H 1.09008 * 109.47109 * 300.00155 * 24 22 4 40 40 H 1.08997 * 109.47304 * 59.99575 * 24 22 4 41 41 H 1.09001 * 109.47296 * 180.02562 * 24 22 4 42 42 H 1.08998 * 109.47210 * 185.90153 * 25 22 4 43 43 H 1.09006 * 109.47299 * 305.90152 * 25 22 4 44 44 H 1.08997 * 109.47304 * 300.00400 * 27 26 25 45 45 H 1.09000 * 109.46958 * 60.00181 * 27 26 25 46 46 H 1.08996 * 109.47349 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 4.2087 0.7590 1.0188 6 8 4.9805 0.7808 1.9580 7 7 4.5675 0.1614 -0.1347 8 6 5.7891 -0.5159 -0.2214 9 6 5.8891 -1.6744 -0.9884 10 6 7.0931 -2.3521 -1.0815 11 6 8.2054 -1.8880 -0.4159 12 6 8.1196 -0.7188 0.3629 13 6 9.2574 -0.2363 1.0498 14 1 9.4153 0.8271 1.1528 15 6 10.1789 -1.1365 1.5961 16 7 9.9686 -2.4246 1.5038 17 14 11.7092 -0.4995 2.4572 18 1 11.4576 -0.4191 3.9186 19 1 12.8428 -1.4237 2.2003 20 1 12.0438 0.8508 1.9375 21 6 6.8961 -0.0311 0.4498 22 6 2.6036 1.9809 2.3855 23 1 3.3680 1.8003 3.1413 24 6 1.2683 1.4066 2.8631 25 6 2.4584 3.4867 2.1566 26 8 1.3648 3.7305 1.2696 27 6 1.1414 5.1136 0.9886 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9313 33 1 3.9791 0.2006 -0.9048 34 1 5.0222 -2.0459 -1.5144 35 1 7.1600 -3.2492 -1.6793 36 1 9.1421 -2.4202 -0.4912 37 1 10.6076 -3.0487 1.8821 38 1 6.8206 0.8693 1.0415 39 1 0.5039 1.5871 2.1073 40 1 1.3717 0.3339 3.0262 41 1 0.9777 1.8899 3.7959 42 1 2.2712 3.9826 3.1090 43 1 3.3763 3.8777 1.7176 44 1 0.9268 5.6430 1.9169 45 1 2.0320 5.5387 0.5256 46 1 0.2950 5.2143 0.3093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596929532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:49 Heat of formation + Delta-G solvation = -39.507857 kcal Electronic energy + Delta-G solvation = -27102.741157 eV Core-core repulsion = 23378.682337 eV Total energy + Delta-G solvation = -3724.058820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78050 -39.70565 -38.78183 -37.24804 -36.25027 -34.93860 -34.32839 -32.38095 -31.70868 -29.57031 -28.23286 -27.27926 -27.20956 -26.32661 -23.92855 -22.80065 -21.98760 -21.27831 -20.36917 -19.65768 -18.92011 -17.74619 -17.37450 -17.07007 -16.96137 -16.52380 -16.39008 -16.09086 -15.94128 -15.72954 -14.91812 -14.80643 -14.69324 -14.21172 -14.04632 -13.97336 -13.68691 -13.51911 -13.20304 -13.03995 -12.98763 -12.87178 -12.67899 -12.52914 -12.21339 -12.12900 -12.11334 -12.00883 -11.90680 -11.60085 -11.21937 -10.96076 -10.69575 -10.56398 -10.28957 -9.71997 -9.28145 -8.66122 -8.50430 -6.38672 0.93728 1.02907 1.22312 1.35879 1.48138 1.50683 1.78037 2.15463 2.24463 2.78938 2.81385 2.98915 3.71477 3.84424 3.96024 4.13180 4.23510 4.28119 4.40251 4.46820 4.48686 4.52213 4.60835 4.62295 4.64097 4.77731 4.89661 4.97266 5.02422 5.07307 5.11606 5.14695 5.15975 5.17058 5.34645 5.35447 5.52096 5.72830 5.77189 5.85776 5.90486 6.02923 6.09211 6.15969 6.19981 6.40700 6.71945 6.95228 6.98119 7.03414 7.58093 8.45007 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.003349 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.301050 B = 8358.308330 C = 9394.779147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.193 4.193 3 C 0.130 3.870 4 N -0.606 5.606 5 C 0.693 3.307 6 O -0.618 6.618 7 N -0.669 5.669 8 C 0.166 3.834 9 C -0.237 4.237 10 C -0.095 4.095 11 C -0.183 4.183 12 C 0.087 3.913 13 C -0.506 4.506 14 H 0.064 0.936 15 C 0.029 3.971 16 N -0.844 5.844 17 Si 0.986 3.014 18 H -0.269 1.269 19 H -0.260 1.260 20 H -0.260 1.260 21 C -0.222 4.222 22 C 0.150 3.850 23 H 0.086 0.914 24 C -0.143 4.143 25 C 0.060 3.940 26 O -0.392 6.392 27 C 0.025 3.975 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.284 0.716 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.800 9.982 -2.615 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.212 4.212 3 C 0.008 3.992 4 N -0.342 5.342 5 C 0.396 3.604 6 O -0.498 6.498 7 N -0.318 5.318 8 C 0.072 3.928 9 C -0.259 4.259 10 C -0.114 4.114 11 C -0.203 4.203 12 C 0.085 3.915 13 C -0.537 4.537 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.471 5.471 17 Si 0.807 3.193 18 H -0.194 1.194 19 H -0.185 1.185 20 H -0.184 1.184 21 C -0.244 4.244 22 C 0.046 3.954 23 H 0.104 0.896 24 C -0.201 4.201 25 C -0.017 4.017 26 O -0.312 6.312 27 C -0.071 4.071 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.321 9.673 -1.944 22.590 hybrid contribution 0.973 0.218 0.318 1.046 sum -19.348 9.891 -1.626 21.791 Atomic orbital electron populations 1.24000 0.94908 1.03040 0.97224 1.23265 0.97108 0.97999 1.02836 1.21023 0.92778 0.97654 0.87698 1.47224 1.12759 1.58436 1.15805 1.16238 0.82666 0.78733 0.82793 1.90938 1.53034 1.65404 1.40406 1.42457 1.20167 1.55779 1.13380 1.17351 0.83678 0.92592 0.99130 1.20497 0.98933 0.96976 1.09462 1.20854 0.92609 0.98905 0.99014 1.21366 0.98618 1.00124 1.00204 1.17852 0.91954 0.92211 0.89517 1.19696 1.06519 0.94182 1.33350 0.91812 1.26686 1.01435 0.94594 0.95491 1.69845 1.35935 1.03297 1.38067 0.85144 0.76526 0.79269 0.78368 1.19388 1.18463 1.18367 1.21167 0.92132 1.03897 1.07211 1.21160 0.98511 0.90537 0.85186 0.89625 1.21990 0.95462 1.00185 1.02481 1.22855 0.89364 0.95068 0.94461 1.87757 1.50867 1.26095 1.66430 1.22911 1.01615 0.81452 1.01113 0.86720 0.87565 0.89096 0.85468 0.90525 0.74794 0.85122 0.85678 0.87805 0.90540 0.89261 0.90117 0.93792 0.89986 0.90121 0.94409 0.93054 0.94468 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 13.50 67.78 0.91 -1.32 16 2 C -0.19 -3.73 8.93 25.65 0.23 -3.51 16 3 C 0.13 2.69 4.63 85.63 0.40 3.09 16 4 N -0.61 -17.20 2.37 -820.04 -1.95 -19.15 16 5 C 0.69 27.29 8.06 179.05 1.44 28.73 16 6 O -0.62 -31.06 13.17 -3.98 -0.05 -31.11 16 7 N -0.67 -25.15 5.21 -317.33 -1.65 -26.81 16 8 C 0.17 7.82 6.28 38.10 0.24 8.06 16 9 C -0.24 -10.27 9.97 22.58 0.23 -10.04 16 10 C -0.10 -4.44 10.02 22.20 0.22 -4.22 16 11 C -0.18 -10.13 8.63 22.75 0.20 -9.93 16 12 C 0.09 5.17 5.51 -21.31 -0.12 5.06 16 13 C -0.51 -30.37 9.04 23.46 0.21 -30.16 16 14 H 0.06 3.77 7.85 -2.91 -0.02 3.75 16 15 C 0.03 1.63 5.36 85.25 0.46 2.09 16 16 N -0.84 -47.71 10.88 21.82 0.24 -47.47 16 17 Si 0.99 42.22 29.56 68.60 2.03 44.24 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 C -0.22 -12.47 8.43 22.85 0.19 -12.27 16 22 C 0.15 3.75 3.15 44.99 0.14 3.90 16 23 H 0.09 2.67 6.93 -2.39 -0.02 2.65 16 24 C -0.14 -2.80 8.37 71.98 0.60 -2.20 16 25 C 0.06 1.20 5.74 71.98 0.41 1.62 16 26 O -0.39 -6.57 6.99 -148.98 -1.04 -7.62 16 27 C 0.02 0.29 11.01 113.37 1.25 1.54 16 28 H 0.11 1.31 7.84 -2.91 -0.02 1.29 16 29 H 0.11 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.09 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.13 2.27 4.62 -2.39 -0.01 2.26 16 32 H 0.08 1.51 6.62 -2.39 -0.02 1.49 16 33 H 0.41 12.07 6.60 -92.71 -0.61 11.46 16 34 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.10 5.98 6.42 -2.91 -0.02 5.96 16 37 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 38 H 0.09 5.34 6.28 -2.91 -0.02 5.32 16 39 H 0.08 1.39 5.71 -2.38 -0.01 1.38 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -74.48 372.48 4.96 -69.52 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 0.37 Total: 37.96 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 7.02 Total: -19.57 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -3.36 Total: -93.43 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.09 Total: -38.73 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -74.48 4.96 -69.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596929532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.017 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds