Wall clock time and date at job start Tue Mar 31 2020 13:18:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46502 * 109.47063 * 2 1
4 4 C 1.46497 * 119.99938 * 270.00002 * 3 2 1
5 5 C 1.50697 * 109.46978 * 270.00036 * 4 3 2
6 6 H 1.08006 * 119.99917 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99967 * 180.02562 * 5 4 3
8 8 N 1.31512 * 119.99975 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00053 * 180.02562 * 7 5 4
10 10 H 1.48498 * 109.47226 * 89.99365 * 9 7 5
11 11 H 1.48497 * 109.47064 * 209.99685 * 9 7 5
12 12 H 1.48510 * 109.46950 * 329.99476 * 9 7 5
13 13 C 1.34781 * 119.99463 * 89.99668 * 3 2 1
14 14 O 1.21285 * 119.99427 * 179.97438 * 13 3 2
15 15 C 1.50698 * 120.00542 * 0.02562 * 13 3 2
16 16 N 1.46894 * 109.47128 * 186.03731 * 15 13 3
17 17 C 1.48061 * 110.99932 * 176.68759 * 16 15 13
18 18 C 1.51194 * 105.74145 * 268.28081 * 17 16 15
19 19 C 1.38221 * 131.74608 * 162.49384 * 18 17 16
20 20 C 1.38240 * 120.15281 * 179.97438 * 19 18 17
21 21 C 1.38171 * 120.06260 * 0.02959 * 20 19 18
22 22 C 1.38722 * 119.93796 * 359.97438 * 21 20 19
23 23 O 1.35896 * 120.03994 * 180.02562 * 22 21 20
24 24 C 1.42901 * 117.00495 * 0.02562 * 23 22 21
25 25 C 1.38352 * 108.25645 * 342.45546 * 18 17 16
26 26 C 1.48259 * 111.02393 * 61.80597 * 16 15 13
27 27 H 1.09003 * 109.46692 * 59.99807 * 1 2 3
28 28 H 1.08999 * 109.47109 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47203 * 300.00011 * 1 2 3
30 30 H 1.08995 * 109.47203 * 239.99989 * 2 1 3
31 31 H 1.09003 * 109.46692 * 120.00193 * 2 1 3
32 32 H 1.08997 * 109.47627 * 30.00116 * 4 3 2
33 33 H 1.09001 * 109.46473 * 150.00146 * 4 3 2
34 34 H 0.97001 * 120.00127 * 180.02562 * 8 7 5
35 35 H 1.09001 * 109.46894 * 66.03412 * 15 13 3
36 36 H 1.09004 * 109.46905 * 306.04023 * 15 13 3
37 37 H 1.09000 * 110.20686 * 149.19086 * 17 16 15
38 38 H 1.09004 * 110.20714 * 27.36613 * 17 16 15
39 39 H 1.08001 * 119.92524 * 359.94822 * 19 18 17
40 40 H 1.07998 * 119.97148 * 180.02562 * 20 19 18
41 41 H 1.08005 * 120.02983 * 180.02562 * 21 20 19
42 42 H 1.09010 * 109.46534 * 299.99702 * 24 23 22
43 43 H 1.08992 * 109.47355 * 59.99541 * 24 23 22
44 44 H 1.08995 * 109.47446 * 180.02562 * 24 23 22
45 45 H 1.08991 * 110.19462 * 332.66358 * 26 16 15
46 46 H 1.09002 * 110.27231 * 210.80744 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.6858 1.8350 -1.7037
6 1 4.3429 1.2309 -1.0956
7 6 4.1494 2.3905 -2.8774
8 7 3.3495 3.1265 -3.6175
9 14 5.9134 2.0963 -3.4170
10 1 5.9761 0.8758 -4.2605
11 1 6.3930 3.2639 -4.1993
12 1 6.7736 1.9155 -2.2200
13 6 2.2429 2.0165 1.1673
14 8 2.6476 3.1599 1.1673
15 6 1.9922 1.3060 2.4724
16 7 2.1707 2.2482 3.5851
17 6 1.8551 1.6051 4.8808
18 6 0.3896 1.8813 5.1297
19 6 -0.5262 1.2929 5.9816
20 6 -1.8322 1.7445 6.0162
21 6 -2.2264 2.7860 5.1982
22 6 -1.3100 3.3788 4.3420
23 8 -1.6953 4.4036 3.5370
24 6 -3.0595 4.8200 3.6246
25 6 -0.0001 2.9251 4.3094
26 6 1.1980 3.3638 3.4986
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 1.8934 -0.5138 -0.8899
31 1 1.8933 -0.5139 0.8900
32 1 1.5818 1.6878 -2.0284
33 1 2.0956 3.1410 -1.1383
34 1 3.6755 3.5170 -4.4434
35 1 2.6969 0.4811 2.5781
36 1 0.9738 0.9176 2.4848
37 1 2.4607 2.0414 5.6751
38 1 2.0308 0.5309 4.8207
39 1 -0.2207 0.4781 6.6213
40 1 -2.5452 1.2829 6.6832
41 1 -3.2469 3.1387 5.2260
42 1 -3.7114 3.9849 3.3679
43 1 -3.2743 5.1494 4.6411
44 1 -3.2336 5.6427 2.9312
45 1 0.9094 3.5318 2.4610
46 1 1.6267 4.2723 3.9215
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000599643992.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:18:45
Heat of formation + Delta-G solvation = -21.786942 kcal
Electronic energy + Delta-G solvation = -27309.043900 eV
Core-core repulsion = 23585.753517 eV
Total energy + Delta-G solvation = -3723.290384 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.96582 -39.33529 -38.31575 -36.26957 -35.13331 -32.78320 -31.32398 -30.82555
-30.04101 -28.31737 -27.48108 -27.29752 -26.17195 -23.23784 -22.93267 -21.99547
-21.37707 -21.07023 -18.27653 -17.79333 -16.80322 -16.42250 -16.25396 -16.01207
-15.83992 -15.44612 -15.35684 -14.62854 -14.44089 -14.21554 -13.82222 -13.47666
-13.32357 -13.31013 -13.03067 -12.62124 -12.54681 -12.33476 -12.07331 -11.96900
-11.76408 -11.60004 -11.55348 -11.33774 -11.14914 -11.14485 -10.97162 -10.85779
-10.69491 -10.48031 -10.07562 -9.57029 -8.94518 -8.69791 -8.50786 -8.38574
-8.26954 -7.58903 -5.99276 -4.03575 1.09451 1.28045 3.15195 3.33754
3.40381 3.44166 3.51289 3.54010 3.72539 4.15071 4.32778 4.50229
4.59620 4.73539 4.88690 4.95272 5.03548 5.09761 5.15909 5.25465
5.30864 5.32024 5.35192 5.40842 5.46060 5.55320 5.61512 5.69144
5.77460 5.81509 5.90411 6.04393 6.08012 6.15569 6.23744 6.25751
6.39834 6.50498 6.58562 6.79155 6.90860 7.16751 7.25511 7.50494
7.61854 7.97713 8.29382 8.48847 8.96418 9.18031 9.61440 11.08781
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.018116 B = 0.003344 C = 0.003206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1545.242101 B = 8371.894016 C = 8730.801533
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.107 3.893
3 N -0.599 5.599
4 C 0.248 3.752
5 C -0.524 4.524
6 H 0.057 0.943
7 C 0.060 3.940
8 N -0.896 5.896
9 Si 0.898 3.102
10 H -0.281 1.281
11 H -0.286 1.286
12 H -0.274 1.274
13 C 0.507 3.493
14 O -0.523 6.523
15 C 0.022 3.978
16 N -0.479 5.479
17 C 0.076 3.924
18 C -0.089 4.089
19 C -0.137 4.137
20 C -0.083 4.083
21 C -0.209 4.209
22 C 0.148 3.852
23 O -0.311 6.311
24 C 0.027 3.973
25 C -0.153 4.153
26 C 0.091 3.909
27 H 0.061 0.939
28 H 0.059 0.941
29 H 0.048 0.952
30 H 0.083 0.917
31 H 0.062 0.938
32 H 0.031 0.969
33 H 0.043 0.957
34 H 0.262 0.738
35 H 0.102 0.898
36 H 0.059 0.941
37 H 0.103 0.897
38 H 0.083 0.917
39 H 0.123 0.877
40 H 0.126 0.874
41 H 0.129 0.871
42 H 0.054 0.946
43 H 0.053 0.947
44 H 0.101 0.899
45 H 0.093 0.907
46 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.580 -5.316 19.038 23.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.017 4.017
3 N -0.332 5.332
4 C 0.129 3.871
5 C -0.563 4.563
6 H 0.075 0.925
7 C -0.141 4.141
8 N -0.535 5.535
9 Si 0.725 3.275
10 H -0.207 1.207
11 H -0.211 1.211
12 H -0.198 1.198
13 C 0.292 3.708
14 O -0.399 6.399
15 C -0.110 4.110
16 N -0.199 5.199
17 C -0.052 4.052
18 C -0.091 4.091
19 C -0.156 4.156
20 C -0.101 4.101
21 C -0.228 4.228
22 C 0.102 3.898
23 O -0.224 6.224
24 C -0.068 4.068
25 C -0.155 4.155
26 C -0.037 4.037
27 H 0.080 0.920
28 H 0.078 0.922
29 H 0.067 0.933
30 H 0.101 0.899
31 H 0.081 0.919
32 H 0.049 0.951
33 H 0.061 0.939
34 H 0.072 0.928
35 H 0.120 0.880
36 H 0.077 0.923
37 H 0.121 0.879
38 H 0.102 0.898
39 H 0.141 0.859
40 H 0.144 0.856
41 H 0.147 0.853
42 H 0.072 0.928
43 H 0.072 0.928
44 H 0.119 0.881
45 H 0.111 0.889
46 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -12.650 -4.289 18.627 22.921
hybrid contribution -0.363 -0.606 -0.247 0.748
sum -13.012 -4.895 18.380 23.046
Atomic orbital electron populations
1.22222 0.96971 1.01298 1.02217 1.21391 0.93357 0.84389 1.02572
1.48251 1.64043 1.13208 1.07673 1.19241 0.96198 0.93612 0.78052
1.21449 0.96937 1.31737 1.06158 0.92454 1.24933 0.97815 0.94941
0.96443 1.69934 1.35681 1.33546 1.14328 0.86503 0.84794 0.77591
0.78578 1.20726 1.21134 1.19842 1.20033 0.78922 0.87136 0.84682
1.90683 1.44591 1.17759 1.86831 1.22373 1.01391 0.96029 0.91159
1.65088 1.46771 1.07808 1.00264 1.21871 0.89771 1.00256 0.93300
1.21121 0.96896 0.95497 0.95558 1.20378 0.92758 1.01706 1.00778
1.20827 0.95787 0.95652 0.97872 1.21160 0.99555 1.01207 1.00905
1.18469 0.91980 0.88481 0.90868 1.86171 1.29038 1.47982 1.59196
1.23062 0.80877 1.00425 1.02411 1.20636 0.93416 0.99215 1.02236
1.21680 0.86170 0.95101 1.00734 0.92019 0.92236 0.93320 0.89888
0.91938 0.95140 0.93936 0.92792 0.88041 0.92312 0.87938 0.89837
0.85920 0.85636 0.85331 0.92751 0.92794 0.88096 0.88854 0.88478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.38 10.18 37.16 0.38 -2.00 16
2 C 0.11 1.76 5.85 -4.04 -0.02 1.74 16
3 N -0.60 -12.91 2.46 -175.06 -0.43 -13.34 16
4 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16
5 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16
6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16
7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
8 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16
9 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16
10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16
12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16
13 C 0.51 10.88 6.90 -10.98 -0.08 10.80 16
14 O -0.52 -13.48 14.36 5.55 0.08 -13.40 16
15 C 0.02 0.35 3.63 -4.98 -0.02 0.33 16
16 N -0.48 -7.59 5.31 -236.17 -1.25 -8.84 16
17 C 0.08 0.90 6.64 -4.09 -0.03 0.87 16
18 C -0.09 -1.09 6.16 -104.34 -0.64 -1.73 16
19 C -0.14 -1.40 10.04 -39.59 -0.40 -1.79 16
20 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16
21 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16
22 C 0.15 1.98 6.68 -39.24 -0.26 1.72 16
23 O -0.31 -4.22 10.48 -19.41 -0.20 -4.42 16
24 C 0.03 0.24 9.81 101.05 0.99 1.23 16
25 C -0.15 -2.20 6.13 -104.19 -0.64 -2.83 16
26 C 0.09 1.50 5.84 -3.99 -0.02 1.48 16
27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.05 0.68 7.12 -51.93 -0.37 0.31 16
30 H 0.08 1.40 8.07 -51.93 -0.42 0.99 16
31 H 0.06 0.85 6.61 -51.93 -0.34 0.51 16
32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16
33 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16
34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
35 H 0.10 1.44 7.70 -51.93 -0.40 1.04 16
36 H 0.06 0.87 6.79 -51.93 -0.35 0.52 16
37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16
38 H 0.08 0.82 7.80 -51.93 -0.41 0.42 16
39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16
40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16
41 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16
42 H 0.05 0.41 7.66 -51.92 -0.40 0.01 16
43 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16
44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
45 H 0.09 1.83 6.03 -51.93 -0.31 1.51 16
46 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16
LS Contribution 373.88 15.07 5.63 5.63
Total: -1.00 -34.91 373.88 -9.44 -44.34
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: -7.04 Total: 0.24 kcal
Atomic # 6 Polarization: 0.79 SS G_CDS: -1.94 Total: -1.15 kcal
Atomic # 7 Polarization: -47.49 SS G_CDS: -0.95 Total: -48.44 kcal
Atomic # 8 Polarization: -17.70 SS G_CDS: -0.12 Total: -17.83 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -34.91 -9.44 -44.34 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599643992.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.557 kcal
(2) G-P(sol) polarization free energy of solvation -34.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds