Wall clock time and date at job start Tue Mar 31 2020 13:18:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46502 * 109.47063 * 2 1
4 4 C 1.46497 * 119.99938 * 270.00002 * 3 2 1
5 5 C 1.50697 * 109.46978 * 270.00036 * 4 3 2
6 6 H 1.08006 * 119.99917 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99967 * 180.02562 * 5 4 3
8 8 N 1.31512 * 119.99975 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00053 * 180.02562 * 7 5 4
10 10 H 1.48498 * 109.47226 * 89.99365 * 9 7 5
11 11 H 1.48497 * 109.47064 * 209.99685 * 9 7 5
12 12 H 1.48510 * 109.46950 * 329.99476 * 9 7 5
13 13 C 1.34781 * 119.99463 * 89.99668 * 3 2 1
14 14 O 1.21285 * 119.99427 * 179.97438 * 13 3 2
15 15 C 1.50698 * 120.00542 * 0.02562 * 13 3 2
16 16 N 1.46894 * 109.47128 * 186.03731 * 15 13 3
17 17 C 1.48061 * 110.99932 * 176.68759 * 16 15 13
18 18 C 1.51194 * 105.74145 * 268.28081 * 17 16 15
19 19 C 1.38221 * 131.74608 * 162.49384 * 18 17 16
20 20 C 1.38240 * 120.15281 * 179.97438 * 19 18 17
21 21 C 1.38171 * 120.06260 * 0.02959 * 20 19 18
22 22 C 1.38722 * 119.93796 * 359.97438 * 21 20 19
23 23 O 1.35896 * 120.03994 * 180.02562 * 22 21 20
24 24 C 1.42901 * 117.00495 * 0.02562 * 23 22 21
25 25 C 1.38352 * 108.25645 * 342.45546 * 18 17 16
26 26 C 1.48259 * 111.02393 * 61.80597 * 16 15 13
27 27 H 1.09003 * 109.46692 * 59.99807 * 1 2 3
28 28 H 1.08999 * 109.47109 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47203 * 300.00011 * 1 2 3
30 30 H 1.08995 * 109.47203 * 239.99989 * 2 1 3
31 31 H 1.09003 * 109.46692 * 120.00193 * 2 1 3
32 32 H 1.08997 * 109.47627 * 30.00116 * 4 3 2
33 33 H 1.09001 * 109.46473 * 150.00146 * 4 3 2
34 34 H 0.97001 * 120.00127 * 180.02562 * 8 7 5
35 35 H 1.09001 * 109.46894 * 66.03412 * 15 13 3
36 36 H 1.09004 * 109.46905 * 306.04023 * 15 13 3
37 37 H 1.09000 * 110.20686 * 149.19086 * 17 16 15
38 38 H 1.09004 * 110.20714 * 27.36613 * 17 16 15
39 39 H 1.08001 * 119.92524 * 359.94822 * 19 18 17
40 40 H 1.07998 * 119.97148 * 180.02562 * 20 19 18
41 41 H 1.08005 * 120.02983 * 180.02562 * 21 20 19
42 42 H 1.09010 * 109.46534 * 299.99702 * 24 23 22
43 43 H 1.08992 * 109.47355 * 59.99541 * 24 23 22
44 44 H 1.08995 * 109.47446 * 180.02562 * 24 23 22
45 45 H 1.08991 * 110.19462 * 332.66358 * 26 16 15
46 46 H 1.09002 * 110.27231 * 210.80744 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.6858 1.8350 -1.7037
6 1 4.3429 1.2309 -1.0956
7 6 4.1494 2.3905 -2.8774
8 7 3.3495 3.1265 -3.6175
9 14 5.9134 2.0963 -3.4170
10 1 5.9761 0.8758 -4.2605
11 1 6.3930 3.2639 -4.1993
12 1 6.7736 1.9155 -2.2200
13 6 2.2429 2.0165 1.1673
14 8 2.6476 3.1599 1.1673
15 6 1.9922 1.3060 2.4724
16 7 2.1707 2.2482 3.5851
17 6 1.8551 1.6051 4.8808
18 6 0.3896 1.8813 5.1297
19 6 -0.5262 1.2929 5.9816
20 6 -1.8322 1.7445 6.0162
21 6 -2.2264 2.7860 5.1982
22 6 -1.3100 3.3788 4.3420
23 8 -1.6953 4.4036 3.5370
24 6 -3.0595 4.8200 3.6246
25 6 -0.0001 2.9251 4.3094
26 6 1.1980 3.3638 3.4986
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 1.8934 -0.5138 -0.8899
31 1 1.8933 -0.5139 0.8900
32 1 1.5818 1.6878 -2.0284
33 1 2.0956 3.1410 -1.1383
34 1 3.6755 3.5170 -4.4434
35 1 2.6969 0.4811 2.5781
36 1 0.9738 0.9176 2.4848
37 1 2.4607 2.0414 5.6751
38 1 2.0308 0.5309 4.8207
39 1 -0.2207 0.4781 6.6213
40 1 -2.5452 1.2829 6.6832
41 1 -3.2469 3.1387 5.2260
42 1 -3.7114 3.9849 3.3679
43 1 -3.2743 5.1494 4.6411
44 1 -3.2336 5.6427 2.9312
45 1 0.9094 3.5318 2.4610
46 1 1.6267 4.2723 3.9215
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000599643992.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:18:44
Heat of formation + Delta-G solvation = -46.257631 kcal
Electronic energy + Delta-G solvation = -27310.105029 eV
Core-core repulsion = 23585.753517 eV
Total energy + Delta-G solvation = -3724.351512 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.97380 -40.71633 -39.48398 -37.33632 -36.77902 -34.92166 -32.44745 -31.76931
-31.55013 -29.75301 -28.49366 -28.37124 -27.61228 -25.02813 -24.27687 -23.23198
-22.39825 -22.01847 -19.89796 -18.66768 -18.63089 -18.06761 -17.51528 -17.19544
-17.02529 -16.61492 -16.53521 -16.22886 -15.57368 -15.48688 -15.18106 -14.73332
-14.62948 -14.40056 -14.24857 -13.99212 -13.76047 -13.64057 -13.36717 -13.30076
-13.11368 -12.95249 -12.82997 -12.68611 -12.65915 -12.50460 -12.26007 -12.17308
-11.93627 -11.91015 -11.83765 -11.70608 -10.64125 -10.54942 -9.81214 -9.57847
-9.42468 -9.15051 -8.21992 -6.37024 0.24998 0.43905 1.36041 1.39858
1.50299 1.83869 2.20526 2.37118 2.42188 2.70749 2.94732 3.07254
3.35417 3.67119 3.69470 4.01285 4.04952 4.10928 4.19376 4.27488
4.33205 4.33594 4.38249 4.40965 4.47451 4.52599 4.59755 4.65634
4.67318 4.77305 4.88891 4.89180 4.94200 5.02184 5.03042 5.20035
5.26607 5.33149 5.44697 5.46540 5.58037 5.66192 5.77954 5.84699
5.91456 6.06900 6.43278 6.70719 6.80295 7.28898 7.50772 8.85238
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.018116 B = 0.003344 C = 0.003206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1545.242101 B = 8371.894016 C = 8730.801533
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.100 3.900
3 N -0.605 5.605
4 C 0.265 3.735
5 C -0.541 4.541
6 H 0.054 0.946
7 C 0.006 3.994
8 N -0.930 5.930
9 Si 0.970 3.030
10 H -0.261 1.261
11 H -0.282 1.282
12 H -0.273 1.273
13 C 0.496 3.504
14 O -0.580 6.580
15 C 0.041 3.959
16 N -0.501 5.501
17 C 0.078 3.922
18 C -0.089 4.089
19 C -0.133 4.133
20 C -0.074 4.074
21 C -0.209 4.209
22 C 0.126 3.874
23 O -0.348 6.348
24 C 0.020 3.980
25 C -0.188 4.188
26 C 0.100 3.900
27 H 0.037 0.963
28 H 0.099 0.901
29 H 0.048 0.952
30 H 0.076 0.924
31 H 0.101 0.899
32 H 0.020 0.980
33 H -0.009 1.009
34 H 0.267 0.733
35 H 0.132 0.868
36 H 0.078 0.922
37 H 0.114 0.886
38 H 0.113 0.887
39 H 0.156 0.844
40 H 0.163 0.837
41 H 0.153 0.847
42 H 0.067 0.933
43 H 0.072 0.928
44 H 0.107 0.893
45 H 0.048 0.952
46 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.283 -8.683 21.657 27.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.022 4.022
3 N -0.337 5.337
4 C 0.144 3.856
5 C -0.580 4.580
6 H 0.073 0.927
7 C -0.193 4.193
8 N -0.570 5.570
9 Si 0.794 3.206
10 H -0.186 1.186
11 H -0.207 1.207
12 H -0.197 1.197
13 C 0.284 3.716
14 O -0.460 6.460
15 C -0.090 4.090
16 N -0.222 5.222
17 C -0.049 4.049
18 C -0.091 4.091
19 C -0.152 4.152
20 C -0.092 4.092
21 C -0.228 4.228
22 C 0.080 3.920
23 O -0.262 6.262
24 C -0.075 4.075
25 C -0.191 4.191
26 C -0.029 4.029
27 H 0.056 0.944
28 H 0.117 0.883
29 H 0.067 0.933
30 H 0.095 0.905
31 H 0.119 0.881
32 H 0.038 0.962
33 H 0.009 0.991
34 H 0.076 0.924
35 H 0.149 0.851
36 H 0.096 0.904
37 H 0.132 0.868
38 H 0.131 0.869
39 H 0.173 0.827
40 H 0.181 0.819
41 H 0.170 0.830
42 H 0.085 0.915
43 H 0.091 0.909
44 H 0.126 0.874
45 H 0.066 0.934
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -13.387 -7.708 21.268 26.286
hybrid contribution -0.251 0.488 -1.021 1.159
sum -13.637 -7.220 20.248 25.457
Atomic orbital electron populations
1.22136 0.95041 1.03446 1.01072 1.21745 0.94920 0.81416 1.04142
1.48281 1.64111 1.15166 1.06121 1.18654 0.95384 0.91252 0.80334
1.21710 0.97770 1.31985 1.06505 0.92748 1.25896 1.02556 0.94409
0.96431 1.70064 1.37874 1.34264 1.14793 0.85379 0.78799 0.78207
0.78201 1.18601 1.20710 1.19733 1.21087 0.77469 0.86715 0.86331
1.90646 1.47111 1.20436 1.87803 1.22248 1.03086 0.95721 0.87935
1.65036 1.47129 1.08107 1.01944 1.21982 0.89971 1.01709 0.91203
1.21219 0.97206 0.94934 0.95703 1.20769 0.92452 1.01913 1.00054
1.21327 0.96289 0.94471 0.97129 1.21484 1.00102 1.01168 1.00046
1.18802 0.92366 0.88995 0.91805 1.86124 1.31561 1.48561 1.59971
1.23319 0.79085 1.01178 1.03874 1.20570 0.93373 1.01327 1.03790
1.21318 0.87879 0.95288 0.98378 0.94377 0.88279 0.93297 0.90530
0.88067 0.96172 0.99057 0.92447 0.85065 0.90438 0.86828 0.86871
0.82659 0.81940 0.82989 0.91471 0.90943 0.87421 0.93383 0.90419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.27 10.18 71.98 0.73 -3.54 16
2 C 0.10 3.18 5.85 86.38 0.51 3.69 16
3 N -0.60 -27.06 2.46 -826.15 -2.03 -29.09 16
4 C 0.27 15.03 5.16 85.63 0.44 15.47 16
5 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16
6 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16
7 C 0.01 0.34 5.46 84.66 0.46 0.80 16
8 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16
9 Si 0.97 46.21 29.54 68.60 2.03 48.24 16
10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16
11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16
12 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16
13 C 0.50 22.22 6.90 87.66 0.60 22.83 16
14 O -0.58 -32.35 14.36 -3.05 -0.04 -32.39 16
15 C 0.04 1.28 3.63 85.56 0.31 1.60 16
16 N -0.50 -15.94 5.31 -901.10 -4.78 -20.72 16
17 C 0.08 1.68 6.64 85.49 0.57 2.25 16
18 C -0.09 -1.98 6.16 -19.68 -0.12 -2.10 16
19 C -0.13 -2.14 10.04 22.27 0.22 -1.92 16
20 C -0.07 -1.10 10.04 22.25 0.22 -0.87 16
21 C -0.21 -3.92 9.04 22.37 0.20 -3.72 16
22 C 0.13 3.37 6.68 22.49 0.15 3.52 16
23 O -0.35 -9.96 10.48 -92.38 -0.97 -10.92 16
24 C 0.02 0.34 9.81 113.37 1.11 1.45 16
25 C -0.19 -5.49 6.13 -19.58 -0.12 -5.61 16
26 C 0.10 3.56 5.84 85.45 0.50 4.05 16
27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16
29 H 0.05 1.31 7.12 -2.39 -0.02 1.29 16
30 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16
31 H 0.10 2.44 6.61 -2.39 -0.02 2.43 16
32 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16
33 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16
34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16
35 H 0.13 3.32 7.70 -2.39 -0.02 3.30 16
36 H 0.08 2.15 6.79 -2.38 -0.02 2.13 16
37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16
38 H 0.11 1.74 7.80 -2.39 -0.02 1.72 16
39 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16
40 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16
41 H 0.15 2.00 6.30 -2.91 -0.02 1.98 16
42 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16
43 H 0.07 0.93 7.66 -2.39 -0.02 0.92 16
44 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16
45 H 0.05 2.10 6.03 -2.39 -0.01 2.09 16
46 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16
Total: -1.00 -83.65 373.88 1.49 -82.15
By element:
Atomic # 1 Polarization: 13.72 SS G_CDS: 0.97 Total: 14.69 kcal
Atomic # 6 Polarization: -0.23 SS G_CDS: 6.04 Total: 5.81 kcal
Atomic # 7 Polarization: -101.05 SS G_CDS: -6.53 Total: -107.57 kcal
Atomic # 8 Polarization: -42.30 SS G_CDS: -1.01 Total: -43.32 kcal
Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal
Total: -83.65 1.49 -82.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599643992.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.893 kcal
(2) G-P(sol) polarization free energy of solvation -83.646 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.752 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds