Wall clock time and date at job start Tue Mar 31 2020 13:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46844 * 60.00490 * 9 7 5 11 11 H 1.48496 * 109.47153 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47045 * 300.00555 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.47167 * 111.00008 * 189.05915 * 16 15 13 18 18 C 1.52887 * 108.50325 * 165.35285 * 17 16 15 19 19 C 1.50712 * 109.94917 * 50.41430 * 18 17 16 20 20 C 1.39169 * 118.48959 * 163.23639 * 19 18 17 21 21 O 1.35899 * 119.88137 * 359.57619 * 20 19 18 22 22 C 1.38531 * 120.23107 * 179.59864 * 20 19 18 23 23 C 1.38173 * 119.76255 * 359.97438 * 22 20 19 24 24 C 1.38037 * 119.93190 * 0.08979 * 23 22 20 25 25 C 1.37738 * 121.69090 * 342.99686 * 19 18 17 26 26 C 1.46628 * 111.00545 * 66.04704 * 16 15 13 27 27 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 31 31 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 32 32 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 33 33 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 34 34 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 36 36 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 37 37 H 1.08997 * 109.63259 * 285.05471 * 17 16 15 38 38 H 1.09005 * 109.62924 * 45.64381 * 17 16 15 39 39 H 1.08995 * 109.39833 * 290.26754 * 18 17 16 40 40 H 1.08994 * 109.30655 * 170.50756 * 18 17 16 41 41 H 0.96703 * 114.00038 * 90.00022 * 21 20 19 42 42 H 1.08002 * 120.11772 * 180.02562 * 22 20 19 43 43 H 1.08004 * 120.02842 * 180.11568 * 23 22 20 44 44 H 1.07997 * 119.74659 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.26556 * 296.17875 * 26 16 15 46 46 H 1.08998 * 109.26525 * 55.64414 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.8412 2.6187 2.3821 11 1 6.1607 2.7965 4.7032 12 1 6.1400 0.6397 3.5955 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.8651 1.6322 -4.8709 18 6 1.8732 2.7365 -5.9282 19 6 3.1952 3.4599 -5.9061 20 6 3.5397 4.2467 -7.0011 21 8 2.6935 4.3407 -8.0603 22 6 4.7424 4.9340 -7.0153 23 6 5.6009 4.8366 -5.9370 24 6 5.2582 4.0547 -4.8523 25 6 4.0556 3.3624 -4.8350 26 6 3.7318 2.5188 -3.6298 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0955 3.1411 1.1383 33 1 1.5816 1.6877 2.0284 34 1 3.6753 3.5170 4.4435 35 1 2.6203 0.4232 -2.5321 36 1 0.9397 1.0094 -2.5279 37 1 2.5512 0.8382 -5.1656 38 1 0.8571 1.2301 -4.7689 39 1 1.0704 3.4436 -5.7193 40 1 1.7190 2.2943 -6.9123 41 1 2.0550 5.0637 -7.9907 42 1 5.0078 5.5444 -7.8659 43 1 6.5388 5.3721 -5.9427 44 1 5.9316 3.9804 -4.0112 45 1 4.0088 3.0614 -2.7259 46 1 4.2988 1.5891 -3.6786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599644895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:52 Heat of formation + Delta-G solvation = -68.214824 kcal Electronic energy + Delta-G solvation = -27035.501719 eV Core-core repulsion = 23310.198071 eV Total energy + Delta-G solvation = -3725.303648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50620 -40.62572 -38.63541 -37.27715 -36.80830 -34.92581 -33.67321 -32.25059 -31.59190 -30.06787 -29.42063 -27.98800 -25.58623 -24.66893 -24.24028 -23.54551 -23.00210 -20.64187 -19.86049 -19.00156 -18.61242 -17.96023 -17.42805 -17.17397 -16.99775 -16.62064 -16.21817 -16.02762 -15.58519 -15.49405 -15.03335 -14.67462 -14.63875 -14.44835 -14.21187 -14.10353 -13.60902 -13.51630 -13.29507 -13.15487 -13.09810 -13.04586 -12.67536 -12.64319 -12.55758 -12.43697 -12.22602 -12.12490 -12.00882 -11.80514 -11.71028 -11.18537 -10.64186 -10.48629 -9.67922 -9.49162 -9.39856 -9.22342 -8.21866 -6.36965 0.27089 0.35812 1.35365 1.39489 1.46826 1.88666 2.22323 2.40623 2.62339 2.93789 3.07315 3.30654 3.63854 3.73564 3.83548 4.05370 4.10730 4.12449 4.22864 4.31668 4.35825 4.38827 4.46185 4.48490 4.54835 4.66172 4.69688 4.77840 4.89887 4.93983 4.96535 5.00155 5.02317 5.07501 5.20282 5.24145 5.41130 5.42745 5.46531 5.57323 5.59718 5.85287 5.88459 5.98322 6.06509 6.08005 6.71478 6.85704 6.85972 7.29590 7.56312 8.84822 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.003508 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.366221 B = 7979.531240 C = 9460.418563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.266 3.734 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.260 1.260 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.051 3.949 16 N -0.533 5.533 17 C 0.052 3.948 18 C -0.065 4.065 19 C -0.110 4.110 20 C 0.099 3.901 21 O -0.500 6.500 22 C -0.153 4.153 23 C -0.107 4.107 24 C -0.143 4.143 25 C -0.072 4.072 26 C 0.092 3.908 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.070 0.930 32 H -0.006 1.006 33 H 0.020 0.980 34 H 0.267 0.733 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.045 0.955 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.407 0.593 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 -5.182 -22.006 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.283 3.717 14 O -0.459 6.459 15 C -0.080 4.080 16 N -0.257 5.257 17 C -0.075 4.075 18 C -0.102 4.102 19 C -0.111 4.111 20 C 0.055 3.945 21 O -0.313 6.313 22 C -0.171 4.171 23 C -0.124 4.124 24 C -0.162 4.162 25 C -0.073 4.073 26 C -0.036 4.036 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.012 0.988 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.266 0.734 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.138 0.862 45 H 0.092 0.908 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.248 -4.550 -21.954 22.654 hybrid contribution 1.163 0.094 1.180 1.660 sum -2.085 -4.456 -20.774 21.348 Atomic orbital electron populations 1.22157 0.94515 1.03490 1.01724 1.21744 0.95367 0.81354 1.03816 1.48290 1.64299 1.15015 1.06134 1.18635 0.95118 0.91392 0.80456 1.21685 0.97915 1.31943 1.06494 0.92902 1.25854 1.02319 0.94494 0.96468 1.70052 1.37809 1.34209 1.14804 0.85499 0.79110 0.79039 0.77362 1.20356 1.20370 1.18411 1.21192 0.77452 0.86718 0.86297 1.90616 1.47308 1.20318 1.87688 1.22075 1.04820 0.93708 0.87381 1.61864 1.16299 1.44241 1.03329 1.22325 1.02125 0.95623 0.87401 1.20412 0.93189 0.97149 0.99419 1.20098 0.97777 1.00523 0.92709 1.18423 0.91653 0.97556 0.86909 1.84722 1.49205 1.57413 1.39952 1.21605 0.94803 1.00864 0.99807 1.21181 1.00428 0.98228 0.92607 1.21278 0.96771 0.98399 0.99719 1.19589 0.94752 0.98421 0.94508 1.20982 0.88394 0.97674 0.96529 0.88582 0.94496 0.91914 0.88222 0.91147 0.98823 0.96243 0.92447 0.90127 0.84926 0.93650 0.87419 0.89925 0.88323 0.73424 0.83355 0.83345 0.86164 0.90836 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.95 5.93 86.38 0.51 3.46 16 3 N -0.61 -25.55 2.46 -826.13 -2.03 -27.58 16 4 C 0.27 14.51 5.17 85.63 0.44 14.95 16 5 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 13 C 0.50 20.63 7.42 87.66 0.65 21.28 16 14 O -0.58 -30.48 13.87 -3.03 -0.04 -30.52 16 15 C 0.05 1.42 3.99 85.56 0.34 1.76 16 16 N -0.53 -15.58 4.42 -905.76 -4.01 -19.59 16 17 C 0.05 1.07 5.57 86.21 0.48 1.55 16 18 C -0.06 -1.32 5.54 29.81 0.17 -1.15 16 19 C -0.11 -2.80 5.78 -19.76 -0.11 -2.91 16 20 C 0.10 2.21 6.67 22.56 0.15 2.36 16 21 O -0.50 -8.73 12.63 -92.42 -1.17 -9.90 16 22 C -0.15 -3.17 9.99 22.32 0.22 -2.95 16 23 C -0.11 -2.38 10.04 22.21 0.22 -2.15 16 24 C -0.14 -3.95 9.64 22.35 0.22 -3.74 16 25 C -0.07 -2.13 5.79 -19.88 -0.12 -2.25 16 26 C 0.09 2.99 4.83 85.59 0.41 3.41 16 27 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.35 7.20 -2.39 -0.02 1.34 16 30 H 0.10 2.21 6.45 -2.39 -0.02 2.20 16 31 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 32 H -0.01 -0.41 7.41 -2.39 -0.02 -0.42 16 33 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.08 1.92 7.34 -2.39 -0.02 1.90 16 36 H 0.13 2.82 6.93 -2.39 -0.02 2.81 16 37 H 0.05 0.88 8.05 -2.39 -0.02 0.86 16 38 H 0.11 1.62 7.87 -2.38 -0.02 1.60 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 1.67 7.85 -2.39 -0.02 1.65 16 41 H 0.41 3.56 9.06 -74.06 -0.67 2.89 16 42 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 45 H 0.07 3.06 5.92 -2.39 -0.01 3.05 16 46 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 Total: -1.00 -79.71 372.00 0.41 -79.30 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.31 Total: 17.53 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.03 Total: 0.16 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -5.75 Total: -103.84 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.21 Total: -40.42 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -79.71 0.41 -79.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599644895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.084 kcal (2) G-P(sol) polarization free energy of solvation -79.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds