Wall clock time and date at job start Tue Mar 31 2020 13:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46716 * 2 1 4 4 C 1.34779 * 119.99430 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00552 * 355.45185 * 4 3 2 6 6 C 1.50704 * 119.99327 * 175.44802 * 4 3 2 7 7 H 1.08999 * 109.47464 * 32.32402 * 6 4 3 8 8 N 1.46508 * 109.46615 * 152.32022 * 6 4 3 9 9 C 1.34779 * 119.99479 * 204.99616 * 8 6 4 10 10 O 1.21603 * 120.00581 * 0.02562 * 9 8 6 11 11 C 1.47436 * 119.99454 * 179.97438 * 9 8 6 12 12 C 1.39220 * 120.28356 * 355.70499 * 11 9 8 13 13 C 1.38222 * 120.09343 * 180.29685 * 12 11 9 14 14 C 1.38827 * 120.67225 * 359.44367 * 13 12 11 15 15 C 1.37596 * 120.56956 * 0.55836 * 14 13 12 16 16 C 1.40698 * 119.88501 * 359.72614 * 15 14 13 17 17 C 1.40889 * 120.33227 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00120 * 214.94116 * 17 16 15 19 19 C 1.40274 * 120.00055 * 34.93132 * 17 16 15 20 20 N 1.30626 * 119.99731 * 8.42933 * 19 17 16 21 21 Si 1.86799 * 119.99852 * 188.42527 * 19 17 16 22 22 H 1.48502 * 109.47264 * 90.00671 * 21 19 17 23 23 H 1.48502 * 109.47133 * 210.00362 * 21 19 17 24 24 H 1.48501 * 109.47628 * 330.00038 * 21 19 17 25 25 C 1.52999 * 109.47120 * 272.31758 * 6 4 3 26 26 C 1.52999 * 109.47193 * 62.37609 * 25 6 4 27 27 C 1.53006 * 109.46874 * 182.37581 * 25 6 4 28 28 H 1.08993 * 109.47168 * 59.99921 * 1 2 3 29 29 H 1.09000 * 109.46773 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47023 * 299.99713 * 1 2 3 31 31 H 1.08999 * 109.47023 * 240.00287 * 2 1 3 32 32 H 1.08993 * 109.47168 * 120.00079 * 2 1 3 33 33 H 0.96998 * 120.00399 * 0.02562 * 3 2 1 34 34 H 0.96994 * 120.00106 * 25.00422 * 8 6 4 35 35 H 1.08004 * 119.95782 * 0.02562 * 12 11 9 36 36 H 1.07999 * 119.66317 * 179.70121 * 13 12 11 37 37 H 1.07998 * 119.71585 * 180.30311 * 14 13 12 38 38 H 1.08007 * 120.05880 * 179.74726 * 15 14 13 39 39 H 0.96999 * 119.99628 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.47412 * 302.37274 * 25 6 4 41 41 H 1.09010 * 109.46922 * 60.06264 * 26 25 6 42 42 H 1.08998 * 109.47407 * 180.02562 * 26 25 6 43 43 H 1.08994 * 109.47328 * 300.06475 * 26 25 6 44 44 H 1.08992 * 109.47082 * 60.00066 * 27 25 6 45 45 H 1.09003 * 109.46797 * 180.02562 * 27 25 6 46 46 H 1.09003 * 109.46851 * 300.00037 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1309 0.7091 0.0843 6 6 3.8464 3.0444 -0.1031 7 1 3.1410 3.7170 0.3849 8 7 5.1528 3.1478 0.5521 9 6 5.5722 4.3340 1.0353 10 8 4.8662 5.3183 0.9279 11 6 6.8865 4.4380 1.6951 12 6 7.6603 3.2992 1.9020 13 6 8.8892 3.4004 2.5265 14 6 9.3723 4.6332 2.9437 15 6 8.6305 5.7764 2.7531 16 6 7.3737 5.7000 2.1252 17 6 6.6066 6.8646 1.9248 18 1 5.5295 6.8200 1.9920 19 6 7.2416 8.0821 1.6382 20 7 8.5246 8.1080 1.3944 21 14 6.2523 9.6663 1.6051 22 1 6.2456 10.2741 2.9600 23 1 6.8670 10.6137 0.6407 24 1 4.8581 9.3708 1.1881 25 6 3.9832 3.4305 -1.5772 26 6 2.6087 3.3796 -2.2474 27 6 4.5498 4.8479 -1.6826 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3880 2.1186 0.0004 34 1 5.7158 2.3627 0.6380 35 1 7.2978 2.3348 1.5781 36 1 9.4815 2.5119 2.6878 37 1 10.3367 4.6951 3.4256 38 1 9.0125 6.7307 3.0846 39 1 8.9636 8.9498 1.1958 40 1 4.6562 2.7322 -2.0748 41 1 1.9360 4.0788 -1.7504 42 1 2.7062 3.6542 -3.2977 43 1 2.2045 2.3702 -2.1712 44 1 5.5289 4.8841 -1.2052 45 1 4.6468 5.1231 -2.7329 46 1 3.8768 5.5461 -1.1850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601602303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:54 Heat of formation + Delta-G solvation = -64.306122 kcal Electronic energy + Delta-G solvation = -27411.740359 eV Core-core repulsion = 23686.606205 eV Total energy + Delta-G solvation = -3725.134154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36820 -38.75835 -36.98770 -35.50095 -35.40834 -33.76375 -32.66211 -30.86779 -29.94674 -29.50198 -27.10717 -26.64570 -25.23636 -23.20231 -22.11860 -21.03883 -20.86215 -19.86602 -19.48383 -17.74480 -17.12806 -16.42261 -15.85325 -15.68089 -15.40245 -15.14237 -14.80303 -14.27074 -14.17420 -13.90166 -13.67073 -13.11228 -12.97501 -12.77387 -12.69767 -12.54620 -12.44059 -12.11682 -11.98415 -11.85891 -11.78379 -11.55164 -11.23635 -11.14433 -11.03332 -10.81100 -10.61351 -10.53764 -10.47012 -10.05274 -9.79915 -9.62658 -9.26091 -9.20853 -8.43097 -8.27823 -7.55581 -7.31370 -6.77692 -4.37585 2.36897 2.56068 2.83756 2.97122 3.10864 3.17219 3.25895 3.98016 3.99606 4.18470 4.58723 4.70409 4.78451 4.81631 4.99577 5.05537 5.09468 5.33582 5.47801 5.51981 5.62461 5.64399 5.72014 5.74597 5.93890 6.01743 6.07560 6.08880 6.16782 6.26857 6.30596 6.34292 6.54919 6.64933 6.91793 6.97945 7.04353 7.16930 7.23930 7.37576 7.49807 7.66626 7.92370 8.01868 8.11045 8.21175 8.40472 8.69928 8.85811 8.92763 9.41104 10.17826 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.004013 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.459072 B = 6976.380172 C = 8195.563029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.730 5.730 4 C 0.516 3.484 5 O -0.536 6.536 6 C 0.140 3.860 7 H 0.102 0.898 8 N -0.733 5.733 9 C 0.570 3.430 10 O -0.534 6.534 11 C -0.261 4.261 12 C -0.056 4.056 13 C -0.244 4.244 14 C -0.095 4.095 15 C -0.148 4.148 16 C 0.148 3.852 17 C -0.421 4.421 18 H 0.111 0.889 19 C 0.069 3.931 20 N -0.794 5.794 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.257 1.257 25 C -0.097 4.097 26 C -0.152 4.152 27 C -0.137 4.137 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.281 0.719 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -9.031 -4.542 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.384 5.384 4 C 0.302 3.698 5 O -0.412 6.412 6 C 0.031 3.969 7 H 0.120 0.880 8 N -0.389 5.389 9 C 0.365 3.635 10 O -0.413 6.413 11 C -0.266 4.266 12 C -0.075 4.075 13 C -0.263 4.263 14 C -0.114 4.114 15 C -0.167 4.167 16 C 0.144 3.856 17 C -0.449 4.449 18 H 0.129 0.871 19 C -0.149 4.149 20 N -0.419 5.419 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.181 1.181 25 C -0.117 4.117 26 C -0.210 4.210 27 C -0.194 4.194 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.204 -8.832 -4.628 15.759 hybrid contribution -0.212 0.518 -0.124 0.573 sum -12.416 -8.314 -4.751 15.680 Atomic orbital electron populations 1.22006 0.94453 1.03154 1.02639 1.21295 0.94191 0.83137 1.02415 1.46120 1.07114 1.08948 1.76228 1.20894 0.82256 0.91620 0.75028 1.90679 1.55343 1.46460 1.48681 1.20683 0.88818 0.92460 0.94974 0.87993 1.45870 1.18098 1.12912 1.62068 1.18334 0.86843 0.81258 0.77092 1.90646 1.56646 1.35521 1.58446 1.19409 0.96925 0.95375 1.14850 1.20716 0.94289 0.95694 0.96825 1.20302 0.98220 0.96459 1.11339 1.20809 0.97890 0.93343 0.99386 1.21359 0.96521 0.96944 1.01912 1.17470 0.90949 0.90948 0.86245 1.20313 0.96990 0.90795 1.36846 0.87086 1.26142 0.94829 1.01230 0.92703 1.69722 1.10510 1.28820 1.32880 0.86189 0.81230 0.79973 0.78717 1.19406 1.20426 1.18083 1.21441 0.97552 0.99539 0.93206 1.21949 0.96561 1.01490 1.01003 1.21866 1.02974 0.94253 1.00330 0.91919 0.90862 0.91872 0.91579 0.91452 0.76287 0.76197 0.89084 0.89094 0.89117 0.86532 0.90796 0.91015 0.92204 0.92145 0.92732 0.91383 0.93819 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 10.03 37.16 0.37 -0.56 16 2 C 0.11 0.99 6.40 -4.04 -0.03 0.96 16 3 N -0.73 -7.45 4.37 -60.29 -0.26 -7.72 16 4 C 0.52 7.32 6.32 -10.98 -0.07 7.25 16 5 O -0.54 -9.30 16.06 5.56 0.09 -9.21 16 6 C 0.14 2.15 2.23 -69.08 -0.15 2.00 16 7 H 0.10 1.57 7.58 -51.93 -0.39 1.17 16 8 N -0.73 -13.65 4.86 -56.00 -0.27 -13.92 16 9 C 0.57 12.82 5.99 -12.51 -0.07 12.74 16 10 O -0.53 -12.91 10.64 5.27 0.06 -12.85 16 11 C -0.26 -6.37 5.92 -104.37 -0.62 -6.99 16 12 C -0.06 -1.25 9.52 -39.22 -0.37 -1.62 16 13 C -0.24 -5.34 10.03 -39.37 -0.39 -5.73 16 14 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 15 C -0.15 -3.77 8.62 -38.89 -0.34 -4.11 16 16 C 0.15 3.93 5.50 -106.54 -0.59 3.35 16 17 C -0.42 -11.32 7.80 -37.81 -0.29 -11.61 16 18 H 0.11 3.06 5.71 -52.48 -0.30 2.76 16 19 C 0.07 1.75 5.26 -17.30 -0.09 1.66 16 20 N -0.79 -20.42 11.15 55.56 0.62 -19.80 16 21 Si 0.91 19.32 29.57 -169.99 -5.03 14.30 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.10 -1.38 2.67 -90.62 -0.24 -1.62 16 26 C -0.15 -1.62 8.74 37.16 0.32 -1.30 16 27 C -0.14 -2.31 7.69 37.16 0.29 -2.03 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 3.20 8.32 -40.82 -0.34 2.86 16 34 H 0.40 7.39 5.86 -40.82 -0.24 7.15 16 35 H 0.09 1.77 6.42 -52.48 -0.34 1.44 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 3.03 6.63 -52.48 -0.35 2.68 16 39 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.52 6.47 -51.93 -0.34 0.19 16 44 H 0.07 1.40 5.84 -51.93 -0.30 1.09 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.22 7.37 -51.93 -0.38 0.84 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -30.20 368.57 -8.68 -38.88 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.76 Total: 14.96 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.67 Total: -10.19 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.08 Total: -41.44 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.15 Total: -22.06 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.20 -8.68 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601602303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.424 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds