Wall clock time and date at job start Tue Mar 31 2020 13:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46716 * 2 1 4 4 C 1.34779 * 119.99430 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00552 * 355.45185 * 4 3 2 6 6 C 1.50704 * 119.99327 * 175.44802 * 4 3 2 7 7 H 1.08999 * 109.47464 * 32.32402 * 6 4 3 8 8 N 1.46508 * 109.46615 * 152.32022 * 6 4 3 9 9 C 1.34779 * 119.99479 * 204.99616 * 8 6 4 10 10 O 1.21603 * 120.00581 * 0.02562 * 9 8 6 11 11 C 1.47436 * 119.99454 * 179.97438 * 9 8 6 12 12 C 1.39220 * 120.28356 * 355.70499 * 11 9 8 13 13 C 1.38222 * 120.09343 * 180.29685 * 12 11 9 14 14 C 1.38827 * 120.67225 * 359.44367 * 13 12 11 15 15 C 1.37596 * 120.56956 * 0.55836 * 14 13 12 16 16 C 1.40698 * 119.88501 * 359.72614 * 15 14 13 17 17 C 1.40889 * 120.33227 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00120 * 214.94116 * 17 16 15 19 19 C 1.40274 * 120.00055 * 34.93132 * 17 16 15 20 20 N 1.30626 * 119.99731 * 8.42933 * 19 17 16 21 21 Si 1.86799 * 119.99852 * 188.42527 * 19 17 16 22 22 H 1.48502 * 109.47264 * 90.00671 * 21 19 17 23 23 H 1.48502 * 109.47133 * 210.00362 * 21 19 17 24 24 H 1.48501 * 109.47628 * 330.00038 * 21 19 17 25 25 C 1.52999 * 109.47120 * 272.31758 * 6 4 3 26 26 C 1.52999 * 109.47193 * 62.37609 * 25 6 4 27 27 C 1.53006 * 109.46874 * 182.37581 * 25 6 4 28 28 H 1.08993 * 109.47168 * 59.99921 * 1 2 3 29 29 H 1.09000 * 109.46773 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47023 * 299.99713 * 1 2 3 31 31 H 1.08999 * 109.47023 * 240.00287 * 2 1 3 32 32 H 1.08993 * 109.47168 * 120.00079 * 2 1 3 33 33 H 0.96998 * 120.00399 * 0.02562 * 3 2 1 34 34 H 0.96994 * 120.00106 * 25.00422 * 8 6 4 35 35 H 1.08004 * 119.95782 * 0.02562 * 12 11 9 36 36 H 1.07999 * 119.66317 * 179.70121 * 13 12 11 37 37 H 1.07998 * 119.71585 * 180.30311 * 14 13 12 38 38 H 1.08007 * 120.05880 * 179.74726 * 15 14 13 39 39 H 0.96999 * 119.99628 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.47412 * 302.37274 * 25 6 4 41 41 H 1.09010 * 109.46922 * 60.06264 * 26 25 6 42 42 H 1.08998 * 109.47407 * 180.02562 * 26 25 6 43 43 H 1.08994 * 109.47328 * 300.06475 * 26 25 6 44 44 H 1.08992 * 109.47082 * 60.00066 * 27 25 6 45 45 H 1.09003 * 109.46797 * 180.02562 * 27 25 6 46 46 H 1.09003 * 109.46851 * 300.00037 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1309 0.7091 0.0843 6 6 3.8464 3.0444 -0.1031 7 1 3.1410 3.7170 0.3849 8 7 5.1528 3.1478 0.5521 9 6 5.5722 4.3340 1.0353 10 8 4.8662 5.3183 0.9279 11 6 6.8865 4.4380 1.6951 12 6 7.6603 3.2992 1.9020 13 6 8.8892 3.4004 2.5265 14 6 9.3723 4.6332 2.9437 15 6 8.6305 5.7764 2.7531 16 6 7.3737 5.7000 2.1252 17 6 6.6066 6.8646 1.9248 18 1 5.5295 6.8200 1.9920 19 6 7.2416 8.0821 1.6382 20 7 8.5246 8.1080 1.3944 21 14 6.2523 9.6663 1.6051 22 1 6.2456 10.2741 2.9600 23 1 6.8670 10.6137 0.6407 24 1 4.8581 9.3708 1.1881 25 6 3.9832 3.4305 -1.5772 26 6 2.6087 3.3796 -2.2474 27 6 4.5498 4.8479 -1.6826 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3880 2.1186 0.0004 34 1 5.7158 2.3627 0.6380 35 1 7.2978 2.3348 1.5781 36 1 9.4815 2.5119 2.6878 37 1 10.3367 4.6951 3.4256 38 1 9.0125 6.7307 3.0846 39 1 8.9636 8.9498 1.1958 40 1 4.6562 2.7322 -2.0748 41 1 1.9360 4.0788 -1.7504 42 1 2.7062 3.6542 -3.2977 43 1 2.2045 2.3702 -2.1712 44 1 5.5289 4.8841 -1.2052 45 1 4.6468 5.1231 -2.7329 46 1 3.8768 5.5461 -1.1850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601602303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:53 Heat of formation + Delta-G solvation = -83.172008 kcal Electronic energy + Delta-G solvation = -27412.558445 eV Core-core repulsion = 23686.606205 eV Total energy + Delta-G solvation = -3725.952240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.66356 -40.32901 -38.68886 -36.85239 -36.41606 -35.60778 -34.19844 -31.82095 -31.66611 -31.25756 -28.40728 -27.86355 -27.01887 -24.18436 -23.64622 -22.70846 -22.08838 -21.20920 -21.04106 -19.44964 -18.67615 -17.66490 -17.19777 -17.06104 -16.86502 -16.57206 -15.98661 -15.92955 -15.60577 -15.27680 -14.92193 -14.81294 -14.47611 -14.29920 -14.00302 -13.71013 -13.51667 -13.37909 -13.27051 -13.01523 -12.84071 -12.81801 -12.67962 -12.58409 -12.40810 -12.30741 -12.29747 -11.99943 -11.92417 -11.75399 -11.48662 -11.11801 -10.98289 -10.18735 -10.13829 -9.89745 -9.40277 -9.20856 -8.64764 -6.34503 0.52447 1.02062 1.36527 1.40026 1.48272 1.53722 1.91749 2.23348 2.34773 2.61808 2.82930 3.58137 3.71282 3.83153 3.92322 4.13719 4.19843 4.24300 4.28290 4.36697 4.47235 4.53929 4.60224 4.65067 4.80024 4.88869 4.91827 4.95943 4.99806 5.07796 5.10201 5.13803 5.25479 5.28776 5.33878 5.35461 5.40668 5.49720 5.59736 5.63473 5.83274 6.05923 6.12233 6.35224 6.41252 6.64675 6.80224 6.93695 7.01465 7.07914 7.66735 8.32933 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.004013 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.459072 B = 6976.380172 C = 8195.563029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.110 3.890 3 N -0.711 5.711 4 C 0.521 3.479 5 O -0.570 6.570 6 C 0.136 3.864 7 H 0.103 0.897 8 N -0.723 5.723 9 C 0.570 3.430 10 O -0.556 6.556 11 C -0.280 4.280 12 C -0.058 4.058 13 C -0.239 4.239 14 C -0.092 4.092 15 C -0.176 4.176 16 C 0.119 3.881 17 C -0.456 4.456 18 H 0.093 0.907 19 C 0.032 3.968 20 N -0.824 5.824 21 Si 0.979 3.021 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.091 4.091 26 C -0.144 4.144 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.416 0.584 34 H 0.403 0.597 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.288 0.712 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 -10.509 -5.290 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.364 5.364 4 C 0.306 3.694 5 O -0.449 6.449 6 C 0.027 3.973 7 H 0.120 0.880 8 N -0.378 5.378 9 C 0.364 3.636 10 O -0.437 6.437 11 C -0.284 4.284 12 C -0.077 4.077 13 C -0.258 4.258 14 C -0.111 4.111 15 C -0.195 4.195 16 C 0.115 3.885 17 C -0.485 4.485 18 H 0.111 0.889 19 C -0.183 4.183 20 N -0.450 5.450 21 Si 0.800 3.200 22 H -0.182 1.182 23 H -0.191 1.191 24 H -0.191 1.191 25 C -0.111 4.111 26 C -0.202 4.202 27 C -0.187 4.187 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.240 0.760 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.834 -10.337 -5.381 18.088 hybrid contribution 0.290 0.779 0.102 0.838 sum -13.544 -9.558 -5.279 17.397 Atomic orbital electron populations 1.21969 0.91665 1.04327 1.03409 1.21462 0.96377 0.81702 1.01791 1.46032 1.05844 1.10421 1.74129 1.20563 0.83373 0.90306 0.75148 1.90668 1.56500 1.46973 1.50749 1.20905 0.87127 0.93795 0.95457 0.87957 1.45674 1.19344 1.11536 1.61230 1.18156 0.86316 0.82018 0.77108 1.90625 1.57154 1.36567 1.59311 1.19824 0.98235 0.95609 1.14781 1.21040 0.94272 0.96144 0.96259 1.20754 0.98132 0.97307 1.09584 1.21156 0.98617 0.92894 0.98438 1.21327 0.97155 0.97442 1.03588 1.17830 0.91845 0.91928 0.86864 1.20288 0.96261 0.92309 1.39602 0.88874 1.26843 0.95817 1.03729 0.91921 1.69758 1.11619 1.29849 1.33823 0.85244 0.79048 0.76323 0.79369 1.18179 1.19064 1.19104 1.21385 0.99736 0.97357 0.92656 1.21896 0.94119 1.02817 1.01335 1.21747 1.00370 0.95930 1.00654 0.90737 0.89519 0.91480 0.91736 0.92634 0.74693 0.75996 0.86323 0.85473 0.86263 0.88058 0.90124 0.91515 0.91068 0.90956 0.91222 0.95622 0.92096 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.03 71.98 0.72 -0.55 16 2 C 0.11 1.67 6.40 86.38 0.55 2.22 16 3 N -0.71 -12.91 4.37 -463.05 -2.02 -14.93 16 4 C 0.52 14.06 6.32 87.66 0.55 14.61 16 5 O -0.57 -19.22 16.06 -3.01 -0.05 -19.27 16 6 C 0.14 4.10 2.23 44.24 0.10 4.19 16 7 H 0.10 3.10 7.58 -2.39 -0.02 3.08 16 8 N -0.72 -27.13 4.86 -449.34 -2.18 -29.31 16 9 C 0.57 26.47 5.99 86.67 0.52 26.99 16 10 O -0.56 -28.10 10.64 -4.04 -0.04 -28.15 16 11 C -0.28 -14.03 5.92 -19.70 -0.12 -14.14 16 12 C -0.06 -2.55 9.52 22.50 0.21 -2.34 16 13 C -0.24 -10.02 10.03 22.41 0.22 -9.79 16 14 C -0.09 -4.17 10.01 22.26 0.22 -3.95 16 15 C -0.18 -9.23 8.62 22.72 0.20 -9.03 16 16 C 0.12 6.60 5.50 -21.11 -0.12 6.48 16 17 C -0.46 -25.81 7.80 23.41 0.18 -25.62 16 18 H 0.09 5.47 5.71 -2.91 -0.02 5.45 16 19 C 0.03 1.67 5.26 85.37 0.45 2.12 16 20 N -0.82 -43.98 11.15 21.88 0.24 -43.74 16 21 Si 0.98 40.92 29.57 68.60 2.03 42.95 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 C -0.09 -2.51 2.67 -10.79 -0.03 -2.54 16 26 C -0.14 -2.69 8.74 71.98 0.63 -2.06 16 27 C -0.13 -4.43 7.69 71.98 0.55 -3.88 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.42 5.42 8.32 -92.71 -0.77 4.65 16 34 H 0.40 14.75 5.86 -92.71 -0.54 14.20 16 35 H 0.12 4.44 6.42 -2.91 -0.02 4.42 16 36 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.10 5.51 6.63 -2.91 -0.02 5.50 16 39 H 0.29 13.92 8.29 -92.71 -0.77 13.15 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.10 6.47 -2.39 -0.02 1.09 16 44 H 0.02 1.07 5.84 -2.39 -0.01 1.06 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.98 7.37 -2.39 -0.02 1.97 16 Total: -1.00 -69.11 368.57 2.53 -66.58 By element: Atomic # 1 Polarization: 43.45 SS G_CDS: -0.30 Total: 43.15 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 4.86 Total: -17.28 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.96 Total: -87.98 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.09 Total: -47.41 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -69.11 2.53 -66.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601602303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.596 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds