Wall clock time and date at job start Tue Mar 31 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 O 1.42899 * 109.46829 * 240.00381 * 2 1 3 5 5 C 1.42902 * 114.00480 * 90.00125 * 4 2 1 6 6 C 1.50700 * 109.47161 * 179.97438 * 5 4 2 7 7 C 1.38653 * 120.78677 * 90.00068 * 6 5 4 8 8 C 1.38202 * 119.15801 * 180.02562 * 7 6 5 9 9 N 1.31871 * 120.76412 * 0.02562 * 8 7 6 10 10 C 1.31870 * 121.72756 * 359.97325 * 9 8 7 11 11 C 1.38194 * 120.76541 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.47190 * 120.00343 * 2 1 3 13 13 O 1.21278 * 120.00175 * 104.25169 * 12 2 1 14 14 N 1.34780 * 119.99677 * 284.24746 * 12 2 1 15 15 C 1.46919 * 120.63126 * 4.41687 * 14 12 2 16 16 C 1.53200 * 108.77492 * 126.36735 * 15 14 12 17 17 C 1.53039 * 109.31261 * 54.63464 * 16 15 14 18 18 C 1.53039 * 109.54045 * 298.63589 * 17 16 15 19 19 H 1.09000 * 109.49482 * 301.38204 * 18 17 16 20 20 C 1.50698 * 109.50344 * 181.31620 * 18 17 16 21 21 H 1.08000 * 120.00317 * 240.00344 * 20 18 17 22 22 C 1.37880 * 119.99795 * 59.99663 * 20 18 17 23 23 N 1.31515 * 119.99841 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99848 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47264 * 59.99890 * 24 22 20 26 26 H 1.48503 * 109.46930 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46910 * 299.99989 * 24 22 20 28 28 C 1.46926 * 120.62647 * 184.13634 * 14 12 2 29 29 H 1.08998 * 109.47022 * 181.54850 * 1 2 3 30 30 H 1.09002 * 109.47086 * 301.55457 * 1 2 3 31 31 H 1.09005 * 109.47322 * 61.55056 * 1 2 3 32 32 H 1.09002 * 109.46895 * 59.99584 * 5 4 2 33 33 H 1.09000 * 109.46878 * 300.00047 * 5 4 2 34 34 H 1.07994 * 120.42203 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.61837 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.61437 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.42348 * 179.97438 * 11 10 9 38 38 H 1.09005 * 109.58744 * 246.15175 * 15 14 12 39 39 H 1.08998 * 109.59092 * 6.43937 * 15 14 12 40 40 H 1.09000 * 109.49655 * 174.58499 * 16 15 14 41 41 H 1.09001 * 109.49591 * 294.68257 * 16 15 14 42 42 H 1.09009 * 109.46130 * 58.65228 * 17 16 15 43 43 H 1.08995 * 109.46483 * 178.62822 * 17 16 15 44 44 H 0.96996 * 119.99519 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.58737 * 353.41925 * 28 14 12 46 46 H 1.08999 * 109.58645 * 113.84948 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2942 6 6 2.7013 -0.6282 -3.4611 7 6 1.8145 -1.2090 -4.3548 8 6 2.3111 -1.9465 -5.4129 9 7 3.6104 -2.1006 -5.5767 10 6 4.4827 -1.5628 -4.7467 11 6 4.0602 -0.8122 -3.6660 12 6 2.0323 -0.7105 1.2304 13 8 2.4782 -1.8348 1.1418 14 7 1.9861 -0.0963 2.4292 15 6 1.3614 1.2261 2.5692 16 6 0.3062 1.1580 3.6779 17 6 0.9529 0.6294 4.9603 18 6 1.4906 -0.7828 4.7179 19 1 0.6746 -1.4339 4.4044 20 6 2.0983 -1.3150 5.9900 21 1 3.1411 -1.5952 6.0144 22 6 1.3232 -1.4440 7.1230 23 7 0.0533 -1.1032 7.0932 24 14 2.0767 -2.1031 8.7001 25 1 3.1890 -1.2161 9.1256 26 1 1.0412 -2.1444 9.7637 27 1 2.5986 -3.4732 8.4644 28 6 2.5541 -0.7392 3.6220 29 1 -0.3633 -1.0273 0.0278 30 1 -0.3633 0.5378 0.8757 31 1 -0.3634 0.4896 -0.9036 32 1 2.9319 0.9514 -2.0450 33 1 1.2538 0.6548 -2.5589 34 1 0.7493 -1.0874 -4.2252 35 1 1.6270 -2.4025 -6.1132 36 1 5.5395 -1.7112 -4.9131 37 1 4.7794 -0.3746 -2.9895 38 1 2.1205 1.9629 2.8320 39 1 0.8884 1.5083 1.6287 40 1 -0.0971 2.1545 3.8579 41 1 -0.4985 0.4888 3.3736 42 1 1.7736 1.2856 5.2503 43 1 0.2100 0.6030 5.7574 44 1 -0.4921 -1.1943 7.8901 45 1 2.8657 -1.7544 3.3765 46 1 3.4124 -0.1659 3.9724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601665194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:20 Heat of formation + Delta-G solvation = -67.544455 kcal Electronic energy + Delta-G solvation = -26562.277748 eV Core-core repulsion = 22837.003170 eV Total energy + Delta-G solvation = -3725.274578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45584 -41.04216 -39.11036 -38.11021 -35.49810 -34.44138 -33.21795 -32.51510 -32.14973 -31.36006 -27.88910 -27.14593 -26.61205 -24.47563 -24.36627 -23.33909 -22.94956 -21.64213 -19.85057 -18.82911 -18.29605 -17.86188 -17.51768 -17.41692 -16.66875 -16.57906 -16.39399 -16.31214 -15.59358 -15.22823 -15.15531 -14.81805 -14.64783 -14.57280 -14.52512 -14.05323 -13.93074 -13.71358 -13.37882 -13.26016 -12.96639 -12.85949 -12.67602 -12.61640 -12.48096 -12.29840 -11.93029 -11.84292 -11.59258 -11.27275 -11.00137 -10.82235 -10.74970 -10.47782 -10.46942 -10.39130 -10.09085 -9.51829 -8.11514 -6.26517 0.13467 0.19714 1.40496 1.42206 1.49284 1.56754 1.83103 2.41950 2.67236 3.07144 3.14982 3.42692 3.58381 3.72692 3.77515 3.88794 4.04206 4.08270 4.12227 4.20396 4.25386 4.33693 4.40229 4.44151 4.52426 4.59551 4.64770 4.69968 4.78722 4.80621 4.87267 4.88423 4.96982 4.98697 5.10872 5.21059 5.30129 5.34976 5.46400 5.55846 5.61004 5.75277 5.93548 6.01864 6.15506 6.34276 6.53564 6.82715 6.99555 7.18867 7.41459 8.91898 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.002486 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.062594 B =11259.020850 C =11810.720546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 H 0.125 0.875 4 O -0.383 6.383 5 C 0.093 3.907 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.160 4.160 12 C 0.500 3.500 13 O -0.587 6.587 14 N -0.603 5.603 15 C 0.101 3.899 16 C -0.128 4.128 17 C -0.107 4.107 18 C 0.041 3.959 19 H -0.016 1.016 20 C -0.540 4.540 21 H 0.051 0.949 22 C 0.018 3.982 23 N -0.912 5.912 24 Si 0.954 3.046 25 H -0.267 1.267 26 H -0.282 1.282 27 H -0.278 1.278 28 C 0.131 3.869 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.047 0.953 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 11.204 -21.510 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.022 3.978 3 H 0.142 0.858 4 O -0.302 6.302 5 C 0.018 3.982 6 C -0.069 4.069 7 C -0.174 4.174 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.180 4.180 12 C 0.288 3.712 13 O -0.468 6.468 14 N -0.335 5.335 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.145 4.145 18 C 0.022 3.978 19 H 0.002 0.998 20 C -0.578 4.578 21 H 0.069 0.931 22 C -0.182 4.182 23 N -0.551 5.551 24 Si 0.779 3.221 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.204 1.204 28 C 0.008 3.992 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.176 0.824 35 H 0.196 0.804 36 H 0.192 0.808 37 H 0.166 0.834 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.234 9.956 -22.154 24.320 hybrid contribution 0.003 -0.350 2.091 2.120 sum 1.237 9.607 -20.063 22.279 Atomic orbital electron populations 1.22347 0.91768 1.03259 1.05436 1.21969 0.96260 0.96685 0.82882 0.85787 1.88104 1.86934 1.35556 1.19580 1.21667 1.02121 0.91329 0.83103 1.20285 0.94027 0.97222 0.95318 1.22374 1.02131 0.97566 0.95293 1.23222 0.91912 0.95416 0.96771 1.67686 1.04366 1.20449 1.29572 1.23139 1.00631 0.93050 0.90527 1.22347 0.96425 0.99986 0.99222 1.21284 0.78190 0.86179 0.85514 1.90659 1.48548 1.21036 1.86507 1.48316 1.57534 1.20522 1.07176 1.22197 0.96257 0.82552 1.00951 1.21919 0.97535 1.01806 0.95292 1.21429 0.99804 0.95719 0.97543 1.18793 0.92708 0.94388 0.91903 0.99805 1.21411 0.96571 1.43398 0.96432 0.93092 1.25671 0.95249 0.95444 1.01794 1.69993 1.06794 1.48468 1.29828 0.85682 0.78321 0.78898 0.79180 1.19167 1.20705 1.20377 1.21464 0.96669 0.96628 0.84415 0.93595 0.89330 0.87562 0.90006 0.88786 0.82428 0.80369 0.80758 0.83428 0.89443 0.86395 0.88731 0.93545 0.94222 0.91913 0.92904 0.93465 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.17 71.98 0.66 -2.57 16 2 C 0.08 1.93 2.28 29.85 0.07 1.99 16 3 H 0.12 1.83 6.93 -2.39 -0.02 1.81 16 4 O -0.38 -9.95 9.55 -130.43 -1.25 -11.19 16 5 C 0.09 1.49 5.92 71.24 0.42 1.91 16 6 C -0.06 -1.12 5.55 -19.67 -0.11 -1.23 16 7 C -0.15 -2.58 9.82 22.36 0.22 -2.36 16 8 C 0.08 1.49 11.18 84.68 0.95 2.44 16 9 N -0.51 -11.13 10.36 -195.85 -2.03 -13.16 16 10 C 0.08 1.59 11.18 84.68 0.95 2.53 16 11 C -0.16 -2.99 9.82 22.36 0.22 -2.77 16 12 C 0.50 17.96 7.00 87.66 0.61 18.58 16 13 O -0.59 -27.81 15.99 15.53 0.25 -27.56 16 14 N -0.60 -21.15 2.98 -819.72 -2.44 -23.59 16 15 C 0.10 2.54 5.70 86.37 0.49 3.03 16 16 C -0.13 -3.96 6.08 30.67 0.19 -3.78 16 17 C -0.11 -4.64 4.96 30.62 0.15 -4.49 16 18 C 0.04 2.07 2.24 -11.60 -0.03 2.05 16 19 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 20 C -0.54 -29.98 8.56 25.60 0.22 -29.77 16 21 H 0.05 2.80 7.75 -2.91 -0.02 2.78 16 22 C 0.02 0.98 5.30 84.66 0.45 1.43 16 23 N -0.91 -51.96 11.31 21.45 0.24 -51.71 16 24 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.13 5.76 5.64 86.22 0.49 6.25 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.53 6.07 -2.39 -0.01 1.52 16 31 H 0.11 1.20 7.84 -2.38 -0.02 1.19 16 32 H 0.08 0.99 8.05 -2.39 -0.02 0.97 16 33 H 0.09 0.93 7.80 -2.39 -0.02 0.91 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.12 1.92 4.34 -2.39 -0.01 1.91 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.06 3.16 6.04 -2.39 -0.01 3.15 16 44 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 45 H 0.05 2.35 7.00 -2.39 -0.02 2.33 16 46 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -78.16 370.78 3.72 -74.44 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.97 Total: 13.85 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.95 Total: -6.77 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -4.23 Total: -88.46 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.00 Total: -38.75 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.16 3.72 -74.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601665194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.897 kcal (2) G-P(sol) polarization free energy of solvation -78.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds