Wall clock time and date at job start Tue Mar 31 2020 12:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 O 1.42904 * 109.47375 * 119.99455 * 2 1 3 5 5 C 1.42897 * 113.99863 * 270.00414 * 4 2 1 6 6 C 1.53003 * 109.46749 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.49804 * 243.74860 * 6 5 4 8 8 C 1.53004 * 117.49779 * 175.08827 * 6 5 4 9 9 C 1.50699 * 109.47423 * 239.99823 * 2 1 3 10 10 O 1.21279 * 120.00220 * 253.11487 * 9 2 1 11 11 N 1.34776 * 120.00047 * 73.10917 * 9 2 1 12 12 C 1.46505 * 119.99759 * 355.17215 * 11 9 2 13 13 C 1.50701 * 109.46869 * 264.14188 * 12 11 9 14 14 H 1.08001 * 120.00338 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99703 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99749 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47366 * 89.99897 * 17 15 13 19 19 H 1.48496 * 109.47049 * 210.00170 * 17 15 13 20 20 H 1.48501 * 109.47094 * 330.00096 * 17 15 13 21 21 C 1.46497 * 120.00291 * 175.16762 * 11 9 2 22 22 C 1.50707 * 109.46927 * 90.00004 * 21 11 9 23 23 C 1.38226 * 119.61435 * 94.98219 * 22 21 11 24 24 C 1.38633 * 119.15822 * 179.79224 * 23 22 21 25 25 C 1.38677 * 118.41948 * 0.46700 * 24 23 22 26 26 C 1.38177 * 119.15977 * 359.51167 * 25 24 23 27 27 N 1.31846 * 119.62093 * 275.00313 * 22 21 11 28 28 H 1.08999 * 109.46994 * 292.95078 * 1 2 3 29 29 H 1.08996 * 109.46842 * 52.95443 * 1 2 3 30 30 H 1.08998 * 109.46839 * 172.95498 * 1 2 3 31 31 H 1.08999 * 109.46939 * 299.99483 * 5 4 2 32 32 H 1.08997 * 109.47705 * 59.99994 * 5 4 2 33 33 H 1.09000 * 115.55271 * 29.41006 * 6 5 4 34 34 H 1.09006 * 117.49762 * 359.97438 * 7 6 5 35 35 H 1.08995 * 117.50515 * 145.01696 * 7 6 5 36 36 H 1.09007 * 117.49201 * 214.97316 * 8 6 5 37 37 H 1.08990 * 117.50128 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.47479 * 24.14457 * 12 11 9 39 39 H 1.08997 * 109.47198 * 144.14802 * 12 11 9 40 40 H 0.97006 * 119.99900 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47267 * 330.00513 * 21 11 9 42 42 H 1.09003 * 109.47380 * 209.99890 * 21 11 9 43 43 H 1.07998 * 120.42198 * 359.97438 * 23 22 21 44 44 H 1.07997 * 120.78944 * 180.23122 * 24 23 22 45 45 H 1.07992 * 120.41586 * 179.77964 * 25 24 23 46 46 H 1.08005 * 119.61179 * 180.24557 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2001 0.1831 2.2940 6 6 2.7092 -0.6403 3.4788 7 6 1.8125 -0.7280 4.7155 8 6 3.0891 0.1159 4.7535 9 6 2.0324 -0.7104 -1.2304 10 8 2.5222 -1.8158 -1.1349 11 7 1.9374 -0.1175 -2.4370 12 6 1.2512 1.1703 -2.5682 13 6 -0.1766 0.9379 -2.9908 14 1 -0.5370 -0.0684 -3.1456 15 6 -1.0231 2.0099 -3.1786 16 7 -0.5844 3.2352 -2.9896 17 14 -2.7931 1.7217 -3.7017 18 1 -3.6481 1.5762 -2.4963 19 1 -3.2654 2.8764 -4.5071 20 1 -2.8728 0.4835 -4.5175 21 6 2.5202 -0.7605 -3.6172 22 6 1.4938 -1.6586 -4.2583 23 6 0.7252 -1.1807 -5.3030 24 6 -0.2132 -2.0163 -5.8887 25 6 -0.3508 -3.3041 -5.3929 26 6 0.4533 -3.7120 -4.3458 27 7 1.3390 -2.8910 -3.8159 28 1 -0.3633 0.4007 0.9463 29 1 -0.3633 0.6191 -0.8202 30 1 -0.3633 -1.0199 -0.1260 31 1 2.9320 0.9515 2.0449 32 1 1.2538 0.6548 2.5588 33 1 3.2985 -1.5204 3.2212 34 1 0.8601 -0.1986 4.6851 35 1 1.8122 -1.6654 5.2716 36 1 3.9282 -0.2669 5.3346 37 1 2.9768 1.2000 4.7479 38 1 1.2666 1.6896 -1.6100 39 1 1.7579 1.7772 -3.3186 40 1 -1.1801 3.9894 -3.1214 41 1 3.3851 -1.3527 -3.3184 42 1 2.8313 0.0028 -4.3305 43 1 0.8561 -0.1700 -5.6605 44 1 -0.8252 -1.6714 -6.7089 45 1 -1.0743 -3.9810 -5.8226 46 1 0.3551 -4.7147 -3.9567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:41 Heat of formation + Delta-G solvation = -16.364938 kcal Electronic energy + Delta-G solvation = -27461.302007 eV Core-core repulsion = 23738.246739 eV Total energy + Delta-G solvation = -3723.055268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.91272 -39.11506 -37.89175 -36.24992 -35.06454 -32.90028 -31.97764 -31.60977 -30.34862 -27.63826 -26.78547 -26.21801 -23.31622 -23.06316 -22.71974 -22.41696 -21.45615 -20.67102 -18.49660 -17.07824 -16.69359 -16.34041 -16.21349 -15.61164 -15.52805 -15.14538 -14.89773 -14.73858 -14.50719 -14.09914 -13.87372 -13.31961 -13.06473 -12.74089 -12.68161 -12.46061 -12.37507 -11.98597 -11.72411 -11.58927 -11.48311 -11.33136 -11.25713 -11.15912 -10.95566 -10.74721 -10.52621 -10.45704 -10.23055 -10.14065 -9.82743 -9.37765 -9.28339 -8.91265 -8.78955 -8.65712 -8.38413 -7.74123 -6.26364 -4.31041 1.55993 1.80106 3.16026 3.24485 3.27261 3.40945 3.45671 3.80064 4.20300 4.25857 4.52290 4.80500 4.83524 4.87998 5.05623 5.12924 5.21405 5.23977 5.34855 5.40030 5.47618 5.50292 5.55311 5.63845 5.66702 5.71651 5.82789 5.84531 5.90885 5.99577 6.04449 6.21045 6.22157 6.24849 6.38065 6.48944 6.59174 6.65522 6.68243 7.01250 7.14443 7.18095 7.42695 7.61776 7.69816 7.97825 8.30714 8.57100 8.75232 9.07804 9.35092 10.79689 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.004571 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.267964 B = 6124.585133 C = 7650.361614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.080 0.920 4 O -0.362 6.362 5 C 0.091 3.909 6 C -0.147 4.147 7 C -0.179 4.179 8 C -0.176 4.176 9 C 0.519 3.481 10 O -0.530 6.530 11 N -0.594 5.594 12 C 0.232 3.768 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.175 3.825 22 C 0.124 3.876 23 C -0.130 4.130 24 C -0.086 4.086 25 C -0.182 4.182 26 C 0.086 3.914 27 N -0.459 5.459 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -4.120 3.209 6.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.021 3.979 3 H 0.098 0.902 4 O -0.280 6.280 5 C 0.014 3.986 6 C -0.165 4.165 7 C -0.215 4.215 8 C -0.213 4.213 9 C 0.305 3.695 10 O -0.406 6.406 11 N -0.327 5.327 12 C 0.112 3.888 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C 0.051 3.949 22 C -0.015 4.015 23 C -0.151 4.151 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.071 4.071 27 N -0.168 5.168 28 H 0.070 0.930 29 H 0.138 0.862 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.155 0.845 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.951 -4.977 3.965 7.490 hybrid contribution -2.053 0.621 -1.021 2.376 sum 1.897 -4.355 2.944 5.589 Atomic orbital electron populations 1.22526 0.92961 1.03960 1.04412 1.21861 0.95880 0.95496 0.84636 0.90234 1.87976 1.86750 1.34274 1.19014 1.22023 0.98835 0.91990 0.85730 1.22133 1.03709 1.02301 0.88396 1.23064 0.94959 1.01935 1.01589 1.22970 0.99197 0.98834 1.00346 1.20163 0.78898 0.86023 0.84387 1.90660 1.44716 1.18982 1.86218 1.48081 1.56065 1.23477 1.05060 1.19591 0.91996 0.78674 0.98540 1.21438 0.95180 0.93311 1.46593 0.91871 1.24891 0.98560 0.94933 0.95130 1.69912 1.36156 0.98098 1.48498 0.86646 0.84932 0.77956 0.79000 1.20478 1.21086 1.19675 1.20071 0.93279 0.94058 0.87518 1.21640 0.96593 0.91128 0.92146 1.21998 0.95833 1.00443 0.96804 1.21489 0.96974 0.93601 0.99139 1.22024 1.01433 0.97279 0.99460 1.22636 0.92161 0.99060 0.93270 1.67579 1.18553 1.03989 1.26650 0.93048 0.86164 0.92673 0.93096 0.93212 0.86803 0.88703 0.88788 0.88604 0.88722 0.94106 0.94593 0.92483 0.89521 0.89340 0.84497 0.85562 0.85743 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 9.22 37.16 0.34 -3.25 16 2 C 0.08 1.62 2.29 -27.88 -0.06 1.55 16 3 H 0.08 1.47 6.53 -51.93 -0.34 1.13 16 4 O -0.36 -6.99 9.55 -54.79 -0.52 -7.52 16 5 C 0.09 1.37 6.03 37.16 0.22 1.59 16 6 C -0.15 -1.92 6.05 -90.62 -0.55 -2.47 16 7 C -0.18 -1.96 10.18 -26.69 -0.27 -2.24 16 8 C -0.18 -1.80 10.26 -26.69 -0.27 -2.07 16 9 C 0.52 11.44 7.00 -10.99 -0.08 11.36 16 10 O -0.53 -13.09 16.18 -14.00 -0.23 -13.32 16 11 N -0.59 -12.36 2.45 -176.43 -0.43 -12.80 16 12 C 0.23 5.10 4.70 -5.19 -0.02 5.08 16 13 C -0.53 -12.52 6.17 -34.44 -0.21 -12.73 16 14 H 0.06 1.60 6.91 -52.49 -0.36 1.24 16 15 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -22.79 13.29 55.43 0.74 -22.06 16 17 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.17 3.29 5.71 -5.19 -0.03 3.26 16 22 C 0.12 2.39 5.79 -82.59 -0.48 1.91 16 23 C -0.13 -2.30 8.57 -39.44 -0.34 -2.64 16 24 C -0.09 -1.36 10.18 -39.27 -0.40 -1.76 16 25 C -0.18 -2.73 10.11 -39.44 -0.40 -3.13 16 26 C 0.09 1.45 11.18 -17.55 -0.20 1.26 16 27 N -0.46 -9.21 10.27 -9.47 -0.10 -9.30 16 28 H 0.05 0.90 7.76 -51.93 -0.40 0.49 16 29 H 0.12 2.64 4.38 -51.93 -0.23 2.41 16 30 H 0.05 1.15 8.13 -51.93 -0.42 0.72 16 31 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.05 0.70 7.49 -51.93 -0.39 0.31 16 33 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.93 5.48 -51.93 -0.28 0.64 16 39 H 0.04 0.82 7.98 -51.93 -0.41 0.40 16 40 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 41 H 0.09 1.65 7.49 -51.93 -0.39 1.26 16 42 H 0.09 1.43 7.85 -51.93 -0.41 1.02 16 43 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 44 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 46 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -29.87 380.74 -9.66 -39.53 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.99 Total: 7.75 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.84 Total: -2.69 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.21 Total: -44.15 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.75 Total: -20.83 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.87 -9.66 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.165 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds