Wall clock time and date at job start Tue Mar 31 2020 12:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 O 1.42904 * 109.47375 * 119.99455 * 2 1 3 5 5 C 1.42897 * 113.99863 * 270.00414 * 4 2 1 6 6 C 1.53003 * 109.46749 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.49804 * 243.74860 * 6 5 4 8 8 C 1.53004 * 117.49779 * 175.08827 * 6 5 4 9 9 C 1.50699 * 109.47423 * 239.99823 * 2 1 3 10 10 O 1.21279 * 120.00220 * 253.11487 * 9 2 1 11 11 N 1.34776 * 120.00047 * 73.10917 * 9 2 1 12 12 C 1.46505 * 119.99759 * 355.17215 * 11 9 2 13 13 C 1.50701 * 109.46869 * 264.14188 * 12 11 9 14 14 H 1.08001 * 120.00338 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99703 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99749 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47366 * 89.99897 * 17 15 13 19 19 H 1.48496 * 109.47049 * 210.00170 * 17 15 13 20 20 H 1.48501 * 109.47094 * 330.00096 * 17 15 13 21 21 C 1.46497 * 120.00291 * 175.16762 * 11 9 2 22 22 C 1.50707 * 109.46927 * 90.00004 * 21 11 9 23 23 C 1.38226 * 119.61435 * 94.98219 * 22 21 11 24 24 C 1.38633 * 119.15822 * 179.79224 * 23 22 21 25 25 C 1.38677 * 118.41948 * 0.46700 * 24 23 22 26 26 C 1.38177 * 119.15977 * 359.51167 * 25 24 23 27 27 N 1.31846 * 119.62093 * 275.00313 * 22 21 11 28 28 H 1.08999 * 109.46994 * 292.95078 * 1 2 3 29 29 H 1.08996 * 109.46842 * 52.95443 * 1 2 3 30 30 H 1.08998 * 109.46839 * 172.95498 * 1 2 3 31 31 H 1.08999 * 109.46939 * 299.99483 * 5 4 2 32 32 H 1.08997 * 109.47705 * 59.99994 * 5 4 2 33 33 H 1.09000 * 115.55271 * 29.41006 * 6 5 4 34 34 H 1.09006 * 117.49762 * 359.97438 * 7 6 5 35 35 H 1.08995 * 117.50515 * 145.01696 * 7 6 5 36 36 H 1.09007 * 117.49201 * 214.97316 * 8 6 5 37 37 H 1.08990 * 117.50128 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.47479 * 24.14457 * 12 11 9 39 39 H 1.08997 * 109.47198 * 144.14802 * 12 11 9 40 40 H 0.97006 * 119.99900 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47267 * 330.00513 * 21 11 9 42 42 H 1.09003 * 109.47380 * 209.99890 * 21 11 9 43 43 H 1.07998 * 120.42198 * 359.97438 * 23 22 21 44 44 H 1.07997 * 120.78944 * 180.23122 * 24 23 22 45 45 H 1.07992 * 120.41586 * 179.77964 * 25 24 23 46 46 H 1.08005 * 119.61179 * 180.24557 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2001 0.1831 2.2940 6 6 2.7092 -0.6403 3.4788 7 6 1.8125 -0.7280 4.7155 8 6 3.0891 0.1159 4.7535 9 6 2.0324 -0.7104 -1.2304 10 8 2.5222 -1.8158 -1.1349 11 7 1.9374 -0.1175 -2.4370 12 6 1.2512 1.1703 -2.5682 13 6 -0.1766 0.9379 -2.9908 14 1 -0.5370 -0.0684 -3.1456 15 6 -1.0231 2.0099 -3.1786 16 7 -0.5844 3.2352 -2.9896 17 14 -2.7931 1.7217 -3.7017 18 1 -3.6481 1.5762 -2.4963 19 1 -3.2654 2.8764 -4.5071 20 1 -2.8728 0.4835 -4.5175 21 6 2.5202 -0.7605 -3.6172 22 6 1.4938 -1.6586 -4.2583 23 6 0.7252 -1.1807 -5.3030 24 6 -0.2132 -2.0163 -5.8887 25 6 -0.3508 -3.3041 -5.3929 26 6 0.4533 -3.7120 -4.3458 27 7 1.3390 -2.8910 -3.8159 28 1 -0.3633 0.4007 0.9463 29 1 -0.3633 0.6191 -0.8202 30 1 -0.3633 -1.0199 -0.1260 31 1 2.9320 0.9515 2.0449 32 1 1.2538 0.6548 2.5588 33 1 3.2985 -1.5204 3.2212 34 1 0.8601 -0.1986 4.6851 35 1 1.8122 -1.6654 5.2716 36 1 3.9282 -0.2669 5.3346 37 1 2.9768 1.2000 4.7479 38 1 1.2666 1.6896 -1.6100 39 1 1.7579 1.7772 -3.3186 40 1 -1.1801 3.9894 -3.1214 41 1 3.3851 -1.3527 -3.3184 42 1 2.8313 0.0028 -4.3305 43 1 0.8561 -0.1700 -5.6605 44 1 -0.8252 -1.6714 -6.7089 45 1 -1.0743 -3.9810 -5.8226 46 1 0.3551 -4.7147 -3.9567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:40 Heat of formation + Delta-G solvation = -31.600369 kcal Electronic energy + Delta-G solvation = -27461.962665 eV Core-core repulsion = 23738.246739 eV Total energy + Delta-G solvation = -3723.715926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40349 -40.59158 -39.14640 -37.45070 -36.82653 -34.66541 -33.41224 -33.05398 -31.81248 -29.39754 -28.01423 -27.75668 -25.03735 -24.53869 -24.20489 -23.25108 -22.85225 -21.72076 -20.10758 -18.71088 -18.34373 -17.82122 -17.65267 -16.96436 -16.91843 -16.55947 -16.37162 -16.27248 -15.91641 -15.48991 -15.13760 -14.72373 -14.44285 -14.32295 -14.10060 -14.04108 -13.87157 -13.49818 -13.34348 -13.08790 -12.90573 -12.72909 -12.61908 -12.58113 -12.39904 -12.37516 -12.02632 -11.90887 -11.68295 -11.38815 -11.27018 -10.74103 -10.66813 -10.53812 -10.33701 -10.27478 -9.81873 -9.44133 -8.15665 -6.23760 0.24585 0.50190 1.39782 1.45341 1.51497 1.73519 1.97197 2.42673 2.73211 2.97063 3.13680 3.16063 3.48922 3.65801 3.86851 3.93757 3.95994 3.97556 4.06868 4.10891 4.22107 4.28437 4.31599 4.34171 4.51999 4.52918 4.62017 4.67313 4.77273 4.80466 4.83598 4.86699 4.92730 4.95870 5.00581 5.20580 5.21790 5.25167 5.30680 5.36859 5.45449 5.70398 5.82302 5.90354 6.11047 6.17820 6.57138 6.85802 7.23495 7.33346 7.46404 8.89886 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.004571 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.267964 B = 6124.585133 C = 7650.361614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 H 0.091 0.909 4 O -0.384 6.384 5 C 0.085 3.915 6 C -0.175 4.175 7 C -0.176 4.176 8 C -0.154 4.154 9 C 0.511 3.489 10 O -0.563 6.563 11 N -0.589 5.589 12 C 0.244 3.756 13 C -0.514 4.514 14 H 0.047 0.953 15 C 0.035 3.965 16 N -0.913 5.913 17 Si 0.934 3.066 18 H -0.282 1.282 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.170 3.830 22 C 0.103 3.897 23 C -0.141 4.141 24 C -0.089 4.089 25 C -0.169 4.169 26 C 0.071 3.929 27 N -0.498 5.498 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.266 0.734 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.164 0.836 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -4.105 3.312 5.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 H 0.109 0.891 4 O -0.303 6.303 5 C 0.009 3.991 6 C -0.193 4.193 7 C -0.212 4.212 8 C -0.191 4.191 9 C 0.299 3.701 10 O -0.442 6.442 11 N -0.321 5.321 12 C 0.124 3.876 13 C -0.553 4.553 14 H 0.065 0.935 15 C -0.166 4.166 16 N -0.553 5.553 17 Si 0.761 3.239 18 H -0.208 1.208 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.047 3.953 22 C -0.036 4.036 23 C -0.162 4.162 24 C -0.115 4.115 25 C -0.189 4.189 26 C -0.086 4.086 27 N -0.208 5.208 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.156 0.844 44 H 0.173 0.827 45 H 0.182 0.818 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.805 -4.953 4.057 6.990 hybrid contribution -1.684 0.548 -1.048 2.058 sum 1.122 -4.405 3.008 5.451 Atomic orbital electron populations 1.22366 0.93027 1.02482 1.04808 1.21752 0.95648 0.95640 0.84285 0.89103 1.87962 1.86757 1.35818 1.19760 1.22281 0.99669 0.92163 0.84975 1.22075 1.05678 1.02736 0.88843 1.23170 0.95433 1.02750 0.99883 1.23091 0.99162 0.99347 0.97488 1.20645 0.78418 0.85781 0.85302 1.90630 1.46392 1.20413 1.86744 1.48086 1.55457 1.23025 1.05577 1.19371 0.91349 0.78974 0.97921 1.21354 0.95766 0.92347 1.45848 0.93461 1.25353 1.01077 0.94764 0.95371 1.69974 1.37098 0.98580 1.49618 0.85911 0.81745 0.77801 0.78469 1.20797 1.20818 1.19502 1.20231 0.93142 0.94661 0.87290 1.21588 0.97477 0.91272 0.93244 1.22088 0.96384 1.00932 0.96764 1.21904 0.96428 0.93684 0.99516 1.22418 1.00916 0.97476 0.98083 1.23125 0.91935 0.99680 0.93900 1.67521 1.20338 1.04830 1.28142 0.90723 0.88121 0.94347 0.92329 0.92243 0.88376 0.88319 0.87846 0.86999 0.87558 0.94590 0.95092 0.92439 0.90502 0.87194 0.84377 0.82691 0.81818 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.73 9.22 71.98 0.66 -6.07 16 2 C 0.09 3.49 2.29 29.85 0.07 3.56 16 3 H 0.09 3.37 6.53 -2.39 -0.02 3.36 16 4 O -0.38 -15.00 9.55 -130.28 -1.24 -16.25 16 5 C 0.09 2.50 6.03 71.98 0.43 2.94 16 6 C -0.17 -4.44 6.05 -10.79 -0.07 -4.50 16 7 C -0.18 -3.56 10.18 30.62 0.31 -3.24 16 8 C -0.15 -2.79 10.26 30.62 0.31 -2.48 16 9 C 0.51 23.10 7.00 87.66 0.61 23.71 16 10 O -0.56 -28.79 16.18 15.68 0.25 -28.53 16 11 N -0.59 -25.03 2.45 -830.49 -2.04 -27.07 16 12 C 0.24 10.82 4.70 85.63 0.40 11.23 16 13 C -0.51 -24.40 6.17 25.60 0.16 -24.24 16 14 H 0.05 2.40 6.91 -2.91 -0.02 2.38 16 15 C 0.04 1.71 5.46 84.66 0.46 2.17 16 16 N -0.91 -46.40 13.29 21.45 0.28 -46.12 16 17 Si 0.93 39.60 29.54 68.60 2.03 41.63 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 21 C 0.17 6.57 5.71 85.64 0.49 7.06 16 22 C 0.10 3.99 5.79 42.56 0.25 4.24 16 23 C -0.14 -4.89 8.57 22.36 0.19 -4.69 16 24 C -0.09 -2.63 10.18 22.47 0.23 -2.40 16 25 C -0.17 -4.64 10.11 22.36 0.23 -4.42 16 26 C 0.07 2.31 11.18 84.67 0.95 3.26 16 27 N -0.50 -20.20 10.27 -183.89 -1.89 -22.09 16 28 H 0.07 2.55 7.76 -2.39 -0.02 2.53 16 29 H 0.10 4.43 4.38 -2.39 -0.01 4.42 16 30 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 32 H 0.06 1.60 7.49 -2.39 -0.02 1.58 16 33 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.10 1.92 8.03 -2.38 -0.02 1.90 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.64 5.48 -2.39 -0.01 1.63 16 39 H 0.03 1.41 7.98 -2.39 -0.02 1.39 16 40 H 0.27 13.02 8.31 -92.70 -0.77 12.25 16 41 H 0.08 3.07 7.49 -2.39 -0.02 3.05 16 42 H 0.11 3.62 7.85 -2.39 -0.02 3.60 16 43 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 44 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 46 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -64.44 380.74 4.06 -60.39 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.97 Total: 31.93 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.69 Total: 6.12 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -3.64 Total: -95.28 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.99 Total: -44.78 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -64.44 4.06 -60.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.788 kcal (2) G-P(sol) polarization free energy of solvation -64.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds