Wall clock time and date at job start Tue Mar 31 2020 12:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46851 * 2 1 4 4 O 1.42903 * 109.46953 * 119.99614 * 2 1 3 5 5 C 1.35897 * 117.00151 * 276.44793 * 4 2 1 6 6 C 1.38728 * 120.05494 * 3.88744 * 5 4 2 7 7 C 1.38152 * 119.94513 * 179.74543 * 6 5 4 8 8 C 1.38270 * 120.05001 * 0.50351 * 7 6 5 9 9 C 1.38263 * 120.11450 * 359.76719 * 8 7 6 10 10 C 1.38146 * 120.05557 * 359.97438 * 9 8 7 11 11 C 1.50692 * 109.47099 * 240.00006 * 2 1 3 12 12 O 1.21279 * 120.00006 * 244.99913 * 11 2 1 13 13 N 1.34776 * 120.00232 * 64.99958 * 11 2 1 14 14 C 1.46505 * 119.99933 * 180.02562 * 13 11 2 15 15 C 1.53041 * 109.45654 * 275.06215 * 14 13 11 16 16 C 1.53193 * 109.31221 * 178.61605 * 15 14 13 17 17 N 1.46921 * 108.77425 * 54.63744 * 16 15 14 18 18 C 1.36933 * 120.63332 * 126.41441 * 17 16 15 19 19 H 1.08003 * 119.99578 * 327.59400 * 18 17 16 20 20 C 1.38814 * 120.00727 * 147.58447 * 18 17 16 21 21 N 1.31617 * 119.99532 * 343.36727 * 20 18 17 22 22 Si 1.86800 * 120.00274 * 163.36043 * 20 18 17 23 23 H 1.48491 * 109.46966 * 90.00503 * 22 20 18 24 24 H 1.48497 * 109.46954 * 210.00707 * 22 20 18 25 25 H 1.48500 * 109.47102 * 330.00545 * 22 20 18 26 26 C 1.46926 * 118.74182 * 306.39004 * 17 16 15 27 27 C 1.53037 * 109.45913 * 154.99986 * 14 13 11 28 28 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47181 * 300.00182 * 1 2 3 30 30 H 1.08997 * 109.47511 * 60.00373 * 1 2 3 31 31 H 1.08000 * 120.03363 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.97712 * 180.22953 * 7 6 5 33 33 H 1.08004 * 119.94194 * 179.74463 * 8 7 6 34 34 H 1.07999 * 119.97279 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.03026 * 179.97438 * 10 9 8 36 36 H 0.96994 * 120.00069 * 359.97438 * 13 11 2 37 37 H 1.08997 * 109.45329 * 35.03230 * 14 13 11 38 38 H 1.08996 * 109.50054 * 298.56847 * 15 14 13 39 39 H 1.09000 * 109.49595 * 58.66930 * 15 14 13 40 40 H 1.09001 * 109.58707 * 294.85148 * 16 15 14 41 41 H 1.09001 * 109.70543 * 174.49564 * 16 15 14 42 42 H 0.96998 * 119.99885 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.58750 * 293.82671 * 26 17 16 44 44 H 1.08997 * 109.70703 * 173.46596 * 26 17 16 45 45 H 1.09003 * 109.50080 * 301.33229 * 27 14 13 46 46 H 1.09007 * 109.50014 * 61.43040 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0837 0.0550 2.3114 6 6 1.6337 1.3671 2.3316 7 6 1.7087 2.1039 3.4978 8 6 2.2413 1.5380 4.6414 9 6 2.6956 0.2323 4.6224 10 6 2.6180 -0.5104 3.4601 11 6 2.0323 -0.7104 -1.2304 12 8 2.6529 -1.7466 -1.1214 13 7 1.7919 -0.1942 -2.4520 14 6 2.2797 -0.8852 -3.6482 15 6 3.7287 -0.4739 -3.9191 16 6 4.2467 -1.2243 -5.1501 17 7 3.3304 -0.9808 -6.2725 18 6 3.8015 -0.5060 -7.4673 19 1 4.6504 0.1615 -7.4862 20 6 3.1882 -0.8825 -8.6543 21 7 2.3859 -1.9256 -8.6784 22 14 3.5014 0.0912 -10.2174 23 1 4.6719 -0.4804 -10.9304 24 1 2.3046 0.0194 -11.0935 25 1 3.7768 1.5087 -9.8708 26 6 1.8991 -1.2571 -6.0888 27 6 1.4075 -0.5063 -4.8472 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.2217 1.8110 1.4375 32 1 1.3550 3.1242 3.5151 33 1 2.3028 2.1170 5.5511 34 1 3.1116 -0.2074 5.5168 35 1 2.9734 -1.5302 3.4456 36 1 1.2952 0.6344 -2.5392 37 1 2.2315 -1.9625 -3.4901 38 1 3.7741 0.5997 -4.1018 39 1 4.3451 -0.7228 -3.0553 40 1 4.2873 -2.2924 -4.9366 41 1 5.2431 -0.8650 -5.4073 42 1 1.9570 -2.1885 -9.5077 43 1 1.7482 -2.3278 -5.9518 44 1 1.3442 -0.9189 -6.9638 45 1 0.3717 -0.7782 -4.6440 46 1 1.4747 0.5677 -5.0211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609330148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:08 Heat of formation + Delta-G solvation = -28.913439 kcal Electronic energy + Delta-G solvation = -26377.200198 eV Core-core repulsion = 22653.600787 eV Total energy + Delta-G solvation = -3723.599412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.82116 -39.54953 -37.81966 -37.04670 -34.50503 -32.87241 -31.82635 -31.06298 -30.15236 -29.90101 -29.28078 -25.53162 -24.56754 -23.14037 -22.59111 -22.24819 -21.62518 -20.20973 -19.32579 -18.66044 -17.52439 -16.61164 -16.45031 -15.94253 -15.88837 -15.39711 -14.85326 -14.68328 -14.48251 -14.09775 -13.82694 -13.69526 -13.59170 -13.39741 -13.07746 -12.86702 -12.68335 -12.56685 -12.41709 -12.09963 -11.86074 -11.48106 -11.35846 -11.19724 -11.07590 -10.88994 -10.73819 -10.53322 -10.31439 -10.09572 -9.91252 -9.72977 -9.48609 -9.30164 -8.79801 -8.49431 -8.47146 -6.65131 -5.82806 -3.28544 1.03029 1.15371 2.49204 2.60057 3.35067 3.42309 3.44431 3.49637 3.51783 4.34018 4.47081 4.51523 4.57502 4.58876 4.66083 4.82865 5.05442 5.07912 5.22215 5.27817 5.31483 5.36754 5.38990 5.46770 5.54870 5.70007 5.72799 5.82214 6.01688 6.03343 6.09859 6.21016 6.23214 6.27505 6.44645 6.47995 6.52419 6.53801 6.77911 6.84118 6.97719 7.12405 7.24184 7.49331 7.60928 7.78789 8.25717 8.44454 9.18264 9.80402 10.40398 11.26165 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.002245 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.442781 B =12471.525483 C =12492.169790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.066 3.934 3 H 0.097 0.903 4 O -0.284 6.284 5 C 0.133 3.867 6 C -0.214 4.214 7 C -0.080 4.080 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.151 4.151 11 C 0.515 3.485 12 O -0.517 6.517 13 N -0.719 5.719 14 C 0.153 3.847 15 C -0.140 4.140 16 C 0.147 3.853 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.178 3.822 27 C -0.146 4.146 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.396 0.604 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 8.587 23.537 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.006 3.994 3 H 0.114 0.886 4 O -0.196 6.196 5 C 0.087 3.913 6 C -0.233 4.233 7 C -0.098 4.098 8 C -0.181 4.181 9 C -0.098 4.098 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.391 6.391 13 N -0.371 5.371 14 C 0.050 3.950 15 C -0.180 4.180 16 C 0.020 3.980 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.731 3.269 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.051 3.949 27 C -0.186 4.186 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.229 0.771 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.913 7.525 23.409 25.074 hybrid contribution -0.247 1.118 -0.925 1.472 sum -5.160 8.643 22.484 24.634 Atomic orbital electron populations 1.22336 0.92636 1.04588 1.03784 1.22256 0.95758 0.97030 0.84394 0.88584 1.86236 1.80645 1.37498 1.15217 1.19121 0.95084 0.90395 0.86650 1.21328 1.07422 0.94380 1.00122 1.20954 0.97252 0.99402 0.92216 1.21071 1.02441 0.95894 0.98670 1.20986 0.97696 0.94044 0.97108 1.20506 1.03851 1.01574 0.90991 1.19962 0.80410 0.85693 0.84095 1.90750 1.39198 1.22956 1.86233 1.46240 1.57512 1.27695 1.05606 1.21090 0.94337 0.97244 0.82358 1.22389 0.95234 1.01016 0.99373 1.20884 0.93873 0.96103 0.87097 1.44034 1.01428 1.76291 1.09647 1.19113 1.15151 1.21365 0.83051 0.91895 1.25165 1.00299 0.96134 0.97690 1.70033 1.33691 1.24109 1.26487 0.86327 0.77338 0.79982 0.83282 1.21291 1.21548 1.20436 1.20654 0.85212 0.95567 0.93476 1.22543 0.97583 1.01871 0.96609 0.90531 0.90725 0.90091 0.85254 0.85798 0.85974 0.85349 0.84998 0.77060 0.89843 0.92270 0.92707 0.96141 0.92465 0.93561 0.95906 0.89836 0.92651 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.11 37.16 0.34 -1.13 16 2 C 0.07 0.72 2.64 -27.89 -0.07 0.65 16 3 H 0.10 0.84 6.32 -51.93 -0.33 0.51 16 4 O -0.28 -3.79 9.34 -39.28 -0.37 -4.15 16 5 C 0.13 1.50 6.58 -39.22 -0.26 1.25 16 6 C -0.21 -1.94 8.20 -39.43 -0.32 -2.27 16 7 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 8 C -0.16 -1.24 10.04 -39.56 -0.40 -1.64 16 9 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 10 C -0.15 -1.55 9.99 -39.43 -0.39 -1.95 16 11 C 0.51 7.53 7.14 -10.99 -0.08 7.45 16 12 O -0.52 -10.03 16.17 -14.30 -0.23 -10.26 16 13 N -0.72 -9.56 5.04 -53.77 -0.27 -9.83 16 14 C 0.15 2.59 2.42 -67.89 -0.16 2.42 16 15 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 16 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 17 N -0.59 -14.64 2.97 -172.32 -0.51 -15.15 16 18 C -0.26 -6.97 9.53 -15.06 -0.14 -7.12 16 19 H 0.06 1.68 7.88 -52.48 -0.41 1.27 16 20 C 0.01 0.18 4.89 -17.43 -0.09 0.09 16 21 N -0.90 -25.85 11.51 55.49 0.64 -25.21 16 22 Si 0.90 21.33 29.59 -169.99 -5.03 16.31 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.18 4.08 5.27 -3.71 -0.02 4.06 16 27 C -0.15 -2.56 5.55 -26.61 -0.15 -2.71 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.53 6.86 -51.93 -0.36 0.17 16 30 H 0.08 0.52 7.92 -51.93 -0.41 0.10 16 31 H 0.13 0.94 5.43 -52.49 -0.29 0.66 16 32 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.40 3.95 8.38 -40.82 -0.34 3.61 16 37 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 2.12 6.40 -51.93 -0.33 1.79 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -32.93 371.79 -9.95 -42.87 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.06 Total: 2.33 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.72 Total: -2.51 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.14 Total: -50.19 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.60 Total: -14.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.93 -9.95 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.957 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds