Wall clock time and date at job start Tue Mar 31 2020 12:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46851 * 2 1 4 4 O 1.42903 * 109.46953 * 119.99614 * 2 1 3 5 5 C 1.35897 * 117.00151 * 276.44793 * 4 2 1 6 6 C 1.38728 * 120.05494 * 3.88744 * 5 4 2 7 7 C 1.38152 * 119.94513 * 179.74543 * 6 5 4 8 8 C 1.38270 * 120.05001 * 0.50351 * 7 6 5 9 9 C 1.38263 * 120.11450 * 359.76719 * 8 7 6 10 10 C 1.38146 * 120.05557 * 359.97438 * 9 8 7 11 11 C 1.50692 * 109.47099 * 240.00006 * 2 1 3 12 12 O 1.21279 * 120.00006 * 244.99913 * 11 2 1 13 13 N 1.34776 * 120.00232 * 64.99958 * 11 2 1 14 14 C 1.46505 * 119.99933 * 180.02562 * 13 11 2 15 15 C 1.53041 * 109.45654 * 275.06215 * 14 13 11 16 16 C 1.53193 * 109.31221 * 178.61605 * 15 14 13 17 17 N 1.46921 * 108.77425 * 54.63744 * 16 15 14 18 18 C 1.36933 * 120.63332 * 126.41441 * 17 16 15 19 19 H 1.08003 * 119.99578 * 327.59400 * 18 17 16 20 20 C 1.38814 * 120.00727 * 147.58447 * 18 17 16 21 21 N 1.31617 * 119.99532 * 343.36727 * 20 18 17 22 22 Si 1.86800 * 120.00274 * 163.36043 * 20 18 17 23 23 H 1.48491 * 109.46966 * 90.00503 * 22 20 18 24 24 H 1.48497 * 109.46954 * 210.00707 * 22 20 18 25 25 H 1.48500 * 109.47102 * 330.00545 * 22 20 18 26 26 C 1.46926 * 118.74182 * 306.39004 * 17 16 15 27 27 C 1.53037 * 109.45913 * 154.99986 * 14 13 11 28 28 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47181 * 300.00182 * 1 2 3 30 30 H 1.08997 * 109.47511 * 60.00373 * 1 2 3 31 31 H 1.08000 * 120.03363 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.97712 * 180.22953 * 7 6 5 33 33 H 1.08004 * 119.94194 * 179.74463 * 8 7 6 34 34 H 1.07999 * 119.97279 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.03026 * 179.97438 * 10 9 8 36 36 H 0.96994 * 120.00069 * 359.97438 * 13 11 2 37 37 H 1.08997 * 109.45329 * 35.03230 * 14 13 11 38 38 H 1.08996 * 109.50054 * 298.56847 * 15 14 13 39 39 H 1.09000 * 109.49595 * 58.66930 * 15 14 13 40 40 H 1.09001 * 109.58707 * 294.85148 * 16 15 14 41 41 H 1.09001 * 109.70543 * 174.49564 * 16 15 14 42 42 H 0.96998 * 119.99885 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.58750 * 293.82671 * 26 17 16 44 44 H 1.08997 * 109.70703 * 173.46596 * 26 17 16 45 45 H 1.09003 * 109.50080 * 301.33229 * 27 14 13 46 46 H 1.09007 * 109.50014 * 61.43040 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0837 0.0550 2.3114 6 6 1.6337 1.3671 2.3316 7 6 1.7087 2.1039 3.4978 8 6 2.2413 1.5380 4.6414 9 6 2.6956 0.2323 4.6224 10 6 2.6180 -0.5104 3.4601 11 6 2.0323 -0.7104 -1.2304 12 8 2.6529 -1.7466 -1.1214 13 7 1.7919 -0.1942 -2.4520 14 6 2.2797 -0.8852 -3.6482 15 6 3.7287 -0.4739 -3.9191 16 6 4.2467 -1.2243 -5.1501 17 7 3.3304 -0.9808 -6.2725 18 6 3.8015 -0.5060 -7.4673 19 1 4.6504 0.1615 -7.4862 20 6 3.1882 -0.8825 -8.6543 21 7 2.3859 -1.9256 -8.6784 22 14 3.5014 0.0912 -10.2174 23 1 4.6719 -0.4804 -10.9304 24 1 2.3046 0.0194 -11.0935 25 1 3.7768 1.5087 -9.8708 26 6 1.8991 -1.2571 -6.0888 27 6 1.4075 -0.5063 -4.8472 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.2217 1.8110 1.4375 32 1 1.3550 3.1242 3.5151 33 1 2.3028 2.1170 5.5511 34 1 3.1116 -0.2074 5.5168 35 1 2.9734 -1.5302 3.4456 36 1 1.2952 0.6344 -2.5392 37 1 2.2315 -1.9625 -3.4901 38 1 3.7741 0.5997 -4.1018 39 1 4.3451 -0.7228 -3.0553 40 1 4.2873 -2.2924 -4.9366 41 1 5.2431 -0.8650 -5.4073 42 1 1.9570 -2.1885 -9.5077 43 1 1.7482 -2.3278 -5.9518 44 1 1.3442 -0.9189 -6.9638 45 1 0.3717 -0.7782 -4.6440 46 1 1.4747 0.5677 -5.0211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609330148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:07 Heat of formation + Delta-G solvation = -48.689570 kcal Electronic energy + Delta-G solvation = -26378.057756 eV Core-core repulsion = 22653.600787 eV Total energy + Delta-G solvation = -3724.456969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73125 -40.62260 -39.07162 -38.16274 -36.05919 -34.24792 -33.13331 -31.86463 -31.66663 -31.01811 -30.49700 -27.11510 -25.72524 -24.13984 -23.88177 -23.51526 -22.80469 -21.41854 -20.87671 -19.41051 -18.97135 -18.15144 -17.41688 -16.90896 -16.82922 -16.65472 -16.31894 -15.79917 -15.48449 -15.39524 -15.33865 -15.03732 -14.77200 -14.38402 -14.30571 -14.13099 -14.08350 -13.59730 -13.30237 -13.21656 -13.04671 -12.85243 -12.65069 -12.53337 -12.43526 -12.25148 -12.09283 -12.03915 -11.91362 -11.73066 -11.59757 -11.36434 -10.83556 -10.57815 -10.10647 -9.93278 -9.17862 -8.66915 -7.89800 -5.39551 0.40535 0.48956 1.46506 1.47727 1.48973 1.55181 1.59262 2.50899 2.56070 2.85950 3.26406 3.47075 3.64612 3.70209 3.84621 3.86772 3.95016 4.01331 4.03627 4.29718 4.30328 4.41490 4.43912 4.52866 4.62441 4.63128 4.65304 4.76628 4.78646 4.82824 4.99121 5.02786 5.09007 5.11565 5.13496 5.27169 5.36747 5.41605 5.45765 5.49568 5.62179 5.64397 5.67012 5.85611 6.35614 6.39520 6.53735 7.13643 7.16078 7.81249 8.37238 9.17245 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.002245 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.442781 B =12471.525483 C =12492.169790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.125 0.875 4 O -0.318 6.318 5 C 0.106 3.894 6 C -0.216 4.216 7 C -0.082 4.082 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.176 4.176 11 C 0.513 3.487 12 O -0.572 6.572 13 N -0.700 5.700 14 C 0.163 3.837 15 C -0.125 4.125 16 C 0.144 3.856 17 N -0.607 5.607 18 C -0.268 4.268 19 H 0.065 0.935 20 C -0.046 4.046 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.267 1.267 26 C 0.181 3.819 27 C -0.127 4.127 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.122 0.878 36 H 0.418 0.582 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.003 0.997 41 H 0.057 0.943 42 H 0.251 0.749 43 H -0.006 1.006 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 12.024 25.153 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.143 0.857 4 O -0.231 6.231 5 C 0.061 3.939 6 C -0.235 4.235 7 C -0.100 4.100 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.194 4.194 11 C 0.299 3.701 12 O -0.451 6.451 13 N -0.353 5.353 14 C 0.058 3.942 15 C -0.165 4.165 16 C 0.018 3.982 17 N -0.331 5.331 18 C -0.398 4.398 19 H 0.083 0.917 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.796 3.204 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.192 1.192 26 C 0.055 3.945 27 C -0.166 4.166 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.140 0.860 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.021 0.979 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.012 0.988 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.847 11.015 25.057 27.989 hybrid contribution 0.096 0.006 -1.331 1.335 sum -5.751 11.022 23.726 26.785 Atomic orbital electron populations 1.22353 0.90383 1.04113 1.05889 1.22318 0.97220 0.97221 0.82060 0.85718 1.86182 1.81533 1.39098 1.16303 1.19381 0.96824 0.91552 0.86160 1.21563 1.07013 0.93413 1.01474 1.21358 0.96435 1.00547 0.91663 1.21469 1.01186 0.95639 0.99761 1.21277 0.97368 0.94460 0.97016 1.20693 1.04967 1.01752 0.92034 1.20699 0.79185 0.85001 0.85255 1.90731 1.41741 1.25556 1.87052 1.45874 1.57152 1.28087 1.04209 1.20676 0.93749 0.96104 0.83633 1.22177 0.95872 1.01022 0.97392 1.20958 0.93789 0.95668 0.87785 1.44300 1.02542 1.76412 1.09860 1.19444 1.15124 1.21090 0.84149 0.91739 1.25944 1.00487 0.97042 1.00700 1.70188 1.34964 1.25713 1.27008 0.85269 0.76796 0.78998 0.79293 1.21355 1.21701 1.19167 1.20499 0.84455 0.94554 0.95030 1.22254 0.98711 1.01752 0.93910 0.92330 0.89015 0.87511 0.83373 0.83000 0.83385 0.83323 0.86041 0.74462 0.92645 0.90973 0.92604 0.97889 0.92430 0.93951 0.98812 0.92486 0.90043 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.11 71.98 0.66 -1.74 16 2 C 0.07 1.44 2.64 29.84 0.08 1.52 16 3 H 0.13 1.76 6.32 -2.39 -0.02 1.75 16 4 O -0.32 -8.46 9.34 -73.40 -0.69 -9.14 16 5 C 0.11 2.31 6.58 22.51 0.15 2.46 16 6 C -0.22 -3.36 8.20 22.37 0.18 -3.18 16 7 C -0.08 -1.01 10.04 22.26 0.22 -0.79 16 8 C -0.16 -2.00 10.04 22.28 0.22 -1.77 16 9 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 10 C -0.18 -3.63 9.99 22.37 0.22 -3.41 16 11 C 0.51 14.54 7.14 87.65 0.63 15.16 16 12 O -0.57 -22.77 16.17 15.96 0.26 -22.51 16 13 N -0.70 -17.16 5.04 -442.41 -2.23 -19.39 16 14 C 0.16 5.40 2.42 45.02 0.11 5.51 16 15 C -0.12 -4.43 5.65 30.67 0.17 -4.26 16 16 C 0.14 6.33 6.52 86.36 0.56 6.89 16 17 N -0.61 -30.58 2.97 -699.10 -2.07 -32.65 16 18 C -0.27 -14.65 9.53 84.03 0.80 -13.84 16 19 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 20 C -0.05 -2.53 4.89 84.86 0.41 -2.11 16 21 N -0.93 -55.02 11.51 21.65 0.25 -54.77 16 22 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 C 0.18 8.48 5.27 86.36 0.46 8.94 16 27 C -0.13 -4.27 5.55 30.67 0.17 -4.10 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.01 6.86 -2.39 -0.02 0.99 16 30 H 0.11 0.92 7.92 -2.39 -0.02 0.91 16 31 H 0.15 1.59 5.43 -2.91 -0.02 1.58 16 32 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.42 6.74 8.38 -92.71 -0.78 5.96 16 37 H 0.06 2.19 7.58 -2.39 -0.02 2.18 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 43 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.06 2.96 6.40 -2.39 -0.02 2.95 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -75.18 371.79 3.02 -72.16 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.20 Total: 15.93 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.27 Total: 4.25 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.05 Total: -106.81 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.43 Total: -31.66 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.18 3.02 -72.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.468 kcal (2) G-P(sol) polarization free energy of solvation -75.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds