Wall clock time and date at job start Tue Mar 31 2020 12:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47363 * 2 1 4 4 C 1.53009 * 109.47115 * 120.00067 * 2 1 3 5 5 O 1.42900 * 109.47000 * 54.99508 * 4 2 1 6 6 C 1.35892 * 117.00016 * 179.97438 * 5 4 2 7 7 C 1.38734 * 120.05540 * 359.73179 * 6 5 4 8 8 C 1.38147 * 119.94201 * 179.74004 * 7 6 5 9 9 C 1.38269 * 120.05601 * 0.50935 * 8 7 6 10 10 C 1.38266 * 120.11251 * 359.76515 * 9 8 7 11 11 C 1.38139 * 120.05246 * 359.97438 * 10 9 8 12 12 N 1.46505 * 109.47313 * 239.99925 * 2 1 3 13 13 C 1.34775 * 119.99961 * 85.00094 * 12 2 1 14 14 O 1.21593 * 119.99813 * 4.80411 * 13 12 2 15 15 N 1.34778 * 119.99576 * 184.79859 * 13 12 2 16 16 C 1.46506 * 119.99478 * 184.95523 * 15 13 12 17 17 C 1.52995 * 109.46756 * 184.43448 * 16 15 13 18 18 C 1.50700 * 115.55168 * 294.90525 * 17 16 15 19 19 H 1.08001 * 119.99553 * 119.11612 * 18 17 16 20 20 C 1.37877 * 120.00417 * 298.84363 * 18 17 16 21 21 N 1.31511 * 119.99890 * 173.45142 * 20 18 17 22 22 Si 1.86793 * 119.99798 * 353.45288 * 20 18 17 23 23 H 1.48502 * 109.47317 * 93.71949 * 22 20 18 24 24 H 1.48502 * 109.47339 * 213.71954 * 22 20 18 25 25 H 1.48500 * 109.47285 * 333.71872 * 22 20 18 26 26 C 1.52997 * 117.51942 * 80.61198 * 17 16 15 27 27 C 1.53001 * 60.00292 * 107.47740 * 26 17 16 28 28 H 1.09001 * 109.46847 * 59.99990 * 1 2 3 29 29 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47030 * 300.00243 * 1 2 3 31 31 H 1.09001 * 109.47151 * 174.99973 * 4 2 1 32 32 H 1.09005 * 109.46559 * 295.00141 * 4 2 1 33 33 H 1.07999 * 120.02762 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.97165 * 180.27640 * 8 7 6 35 35 H 1.07997 * 119.94185 * 179.74364 * 9 8 7 36 36 H 1.07995 * 119.96865 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.02888 * 179.97438 * 11 10 9 38 38 H 0.97002 * 119.99931 * 265.00224 * 12 2 1 39 39 H 0.96992 * 120.00416 * 4.95911 * 15 13 12 40 40 H 1.09007 * 109.46665 * 64.43815 * 16 15 13 41 41 H 1.09000 * 109.47364 * 304.43608 * 16 15 13 42 42 H 0.97009 * 120.00084 * 179.97438 * 21 20 18 43 43 H 1.08999 * 117.49817 * 214.96758 * 26 17 16 44 44 H 1.09001 * 117.49655 * 359.97438 * 26 17 16 45 45 H 1.08994 * 117.50206 * 252.51543 * 27 26 17 46 46 H 1.09005 * 117.51531 * 107.47750 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.4701 -2.0304 1.3095 6 6 1.8233 -2.8090 2.3658 7 6 2.7047 -2.3252 3.3217 8 6 3.0579 -3.1167 4.3973 9 6 2.5421 -4.3941 4.5162 10 6 1.6679 -4.8807 3.5618 11 6 1.3074 -4.0911 2.4872 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.9420 1.1797 -2.3918 15 7 2.5034 -0.6739 -3.4795 16 6 2.7492 0.0717 -4.7165 17 6 3.0269 -0.9098 -5.8568 18 6 4.2843 -1.7287 -5.7178 19 1 4.2244 -2.8060 -5.6686 20 6 5.5116 -1.1031 -5.6591 21 7 6.5957 -1.8043 -5.4091 22 14 5.6343 0.7403 -5.9347 23 1 5.5809 1.4410 -4.6265 24 1 6.9173 1.0551 -6.6129 25 1 4.5021 1.1903 -6.7838 26 6 1.8224 -1.5731 -6.5278 27 6 2.6098 -0.4898 -7.2677 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1263 -0.7995 1.2057 32 1 1.7516 -0.1583 2.1370 33 1 3.1113 -1.3291 3.2269 34 1 3.7406 -2.7389 5.1441 35 1 2.8227 -5.0128 5.3556 36 1 1.2667 -5.8789 3.6567 37 1 0.6248 -4.4718 1.7417 38 1 2.2491 -1.6318 -1.1526 39 1 2.5970 -1.6392 -3.4684 40 1 3.6111 0.7252 -4.5816 41 1 1.8723 0.6720 -4.9593 42 1 7.4593 -1.3642 -5.3681 43 1 1.9395 -2.6018 -6.8686 44 1 0.8318 -1.3106 -6.1565 45 1 2.1372 0.4855 -7.3834 46 1 3.2451 -0.8056 -8.0953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797434811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:41 Heat of formation + Delta-G solvation = -40.077172 kcal Electronic energy + Delta-G solvation = -26238.371225 eV Core-core repulsion = 22514.287718 eV Total energy + Delta-G solvation = -3724.083508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36861 -40.81007 -38.96405 -38.43140 -36.33261 -34.98202 -34.28413 -32.22356 -31.77978 -30.54700 -28.44512 -27.87668 -26.87895 -23.84914 -23.30806 -23.20120 -22.22470 -21.48299 -21.08213 -19.52864 -19.11985 -18.41772 -17.59985 -17.09269 -16.91705 -16.69495 -16.51000 -16.21516 -15.73041 -15.41390 -15.34481 -14.98829 -14.87103 -14.46066 -14.35480 -14.28168 -14.08244 -13.86479 -13.46311 -13.34688 -13.00995 -12.73010 -12.62343 -12.44968 -12.18100 -12.11910 -12.06504 -11.92912 -11.70795 -11.51406 -11.30771 -11.01708 -10.70787 -10.37762 -10.29334 -9.92039 -9.66711 -9.14067 -8.32146 -6.34776 0.42523 0.52602 1.31450 1.37641 1.47969 1.75194 2.11148 2.24527 2.33945 2.88200 2.94397 3.26013 3.50189 3.59744 3.93737 3.97649 4.02580 4.03974 4.23626 4.28533 4.31284 4.35590 4.46560 4.47789 4.53704 4.54591 4.61482 4.72905 4.78181 4.81835 4.92453 4.96447 5.07750 5.11598 5.26286 5.28905 5.39796 5.50695 5.51527 5.54627 5.63778 5.63983 5.69142 5.88302 6.07433 6.29613 6.45178 6.71194 7.14422 7.33174 7.61303 8.82239 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002883 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.440713 B = 9708.319558 C =10253.665473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.097 0.903 4 C 0.058 3.942 5 O -0.320 6.320 6 C 0.112 3.888 7 C -0.221 4.221 8 C -0.089 4.089 9 C -0.167 4.167 10 C -0.086 4.086 11 C -0.170 4.170 12 N -0.732 5.732 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.720 5.720 16 C 0.180 3.820 17 C -0.042 4.042 18 C -0.476 4.476 19 H 0.045 0.955 20 C 0.035 3.965 21 N -0.939 5.939 22 Si 0.919 3.081 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.226 1.226 26 C -0.155 4.155 27 C -0.182 4.182 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.407 0.593 39 H 0.407 0.593 40 H 0.028 0.972 41 H 0.059 0.941 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -2.058 19.453 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.115 0.885 4 C -0.018 4.018 5 O -0.234 6.234 6 C 0.067 3.933 7 C -0.239 4.239 8 C -0.107 4.107 9 C -0.185 4.185 10 C -0.104 4.104 11 C -0.189 4.189 12 N -0.389 5.389 13 C 0.399 3.601 14 O -0.522 6.522 15 N -0.373 5.373 16 C 0.055 3.945 17 C -0.043 4.043 18 C -0.513 4.513 19 H 0.063 0.937 20 C -0.164 4.164 21 N -0.578 5.578 22 Si 0.746 3.254 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.149 1.149 26 C -0.192 4.192 27 C -0.220 4.220 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.150 0.850 38 H 0.243 0.757 39 H 0.243 0.757 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.965 -1.004 19.259 22.695 hybrid contribution 1.075 0.022 -0.236 1.100 sum -10.890 -0.983 19.023 21.942 Atomic orbital electron populations 1.22051 0.94042 1.02707 1.02325 1.20994 0.95409 0.96294 0.81478 0.88502 1.23163 0.98383 0.81820 0.98418 1.86046 1.67384 1.26619 1.43369 1.19257 0.95004 0.91565 0.87444 1.21519 1.02573 1.02589 0.97269 1.21302 0.98359 0.94088 0.96933 1.21421 0.99568 0.96615 1.00866 1.21299 0.96347 1.00055 0.92705 1.20704 1.04434 0.92422 1.01322 1.45098 1.71434 1.14310 1.08016 1.16141 0.77835 0.84896 0.81191 1.90827 1.60594 1.14628 1.86112 1.44940 1.72691 1.11142 1.08554 1.20729 0.97963 0.92806 0.83012 1.19445 0.95384 0.98899 0.90589 1.20377 0.88864 0.92848 1.49215 0.93686 1.25546 0.95453 1.01477 0.93907 1.70014 0.99418 1.38029 1.50372 0.86213 0.78439 0.82098 0.78689 1.21656 1.22311 1.14889 1.22807 0.94929 0.97378 1.04064 1.23091 1.03983 0.98891 0.96061 0.93996 0.91692 0.89671 0.91006 0.87957 0.84431 0.83876 0.83829 0.83333 0.85011 0.75726 0.75745 0.95432 0.92272 0.92665 0.89627 0.88353 0.88908 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.29 71.98 0.67 -2.63 16 2 C 0.16 3.80 3.02 44.99 0.14 3.94 16 3 H 0.10 2.48 7.51 -2.39 -0.02 2.46 16 4 C 0.06 1.04 4.48 71.99 0.32 1.37 16 5 O -0.32 -6.70 8.99 -92.33 -0.83 -7.53 16 6 C 0.11 2.29 6.69 22.51 0.15 2.44 16 7 C -0.22 -3.91 9.04 22.37 0.20 -3.70 16 8 C -0.09 -1.36 10.04 22.26 0.22 -1.13 16 9 C -0.17 -2.39 10.04 22.28 0.22 -2.17 16 10 C -0.09 -1.33 10.04 22.25 0.22 -1.10 16 11 C -0.17 -3.23 9.99 22.37 0.22 -3.01 16 12 N -0.73 -21.00 5.06 -457.78 -2.32 -23.32 16 13 C 0.70 26.28 8.52 179.05 1.53 27.80 16 14 O -0.64 -28.11 15.96 -4.01 -0.06 -28.18 16 15 N -0.72 -27.90 5.48 -478.51 -2.62 -30.53 16 16 C 0.18 7.65 5.11 86.38 0.44 8.09 16 17 C -0.04 -1.81 0.85 -52.93 -0.04 -1.85 16 18 C -0.48 -25.18 9.17 25.60 0.23 -24.95 16 19 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 20 C 0.03 1.96 5.46 84.66 0.46 2.42 16 21 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 22 Si 0.92 44.60 24.80 68.60 1.70 46.31 16 23 H -0.29 -14.51 6.97 99.48 0.69 -13.82 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.23 -9.97 5.97 99.48 0.59 -9.37 16 26 C -0.15 -5.58 9.96 30.59 0.30 -5.28 16 27 C -0.18 -6.97 8.44 30.60 0.26 -6.72 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.41 7.56 -2.39 -0.02 1.39 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.31 7.65 -2.39 -0.02 1.29 16 32 H 0.10 1.35 7.68 -2.38 -0.02 1.33 16 33 H 0.14 2.01 6.30 -2.91 -0.02 1.99 16 34 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.41 10.61 8.41 -92.71 -0.78 9.83 16 39 H 0.41 14.93 8.36 -92.71 -0.78 14.16 16 40 H 0.03 1.32 4.55 -2.38 -0.01 1.30 16 41 H 0.06 2.39 8.06 -2.39 -0.02 2.37 16 42 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 Total: -1.00 -69.26 377.96 1.03 -68.22 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.69 Total: 37.98 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.56 Total: -6.49 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.64 Total: -110.32 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.89 Total: -35.70 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.70 Total: 46.31 kcal Total: -69.26 1.03 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797434811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds