Wall clock time and date at job start Tue Mar 31 2020 13:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.46740 * 2 1 4 4 C 1.46902 * 110.99946 * 298.48684 * 3 2 1 5 5 C 1.53005 * 109.46819 * 160.50805 * 4 3 2 6 6 H 1.08995 * 109.47409 * 56.07426 * 5 4 3 7 7 O 1.42898 * 109.46981 * 296.07409 * 5 4 3 8 8 C 1.50702 * 109.46781 * 176.08082 * 5 4 3 9 9 H 1.07995 * 120.00029 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99631 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00139 * 359.97438 * 10 8 5 12 12 Si 1.86799 * 119.99811 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46610 * 90.00376 * 12 10 8 14 14 H 1.48499 * 109.47224 * 210.00010 * 12 10 8 15 15 H 1.48502 * 109.47206 * 330.00288 * 12 10 8 16 16 C 1.46901 * 110.99457 * 174.53761 * 3 2 1 17 17 H 1.09001 * 110.53685 * 170.41946 * 16 3 2 18 18 C 1.54624 * 110.48816 * 293.02730 * 16 3 2 19 19 C 1.54484 * 101.79667 * 93.90277 * 18 16 3 20 20 N 1.46759 * 105.47557 * 25.39692 * 19 18 16 21 21 C 1.39918 * 124.35280 * 162.99887 * 20 19 18 22 22 C 1.38869 * 120.07066 * 175.37344 * 21 20 19 23 23 C 1.38119 * 119.92703 * 179.70493 * 22 21 20 24 24 C 1.38285 * 120.06879 * 0.57610 * 23 22 21 25 25 C 1.38283 * 120.14291 * 359.72373 * 24 23 22 26 26 C 1.38111 * 120.06954 * 359.97438 * 25 24 23 27 27 C 1.34428 * 111.29666 * 342.98676 * 20 19 18 28 28 O 1.21288 * 124.93586 * 180.38022 * 27 20 19 29 29 H 1.08997 * 109.47385 * 306.63602 * 1 2 3 30 30 H 1.09004 * 109.47171 * 66.63104 * 1 2 3 31 31 H 1.09001 * 109.47268 * 186.63296 * 1 2 3 32 32 H 1.08999 * 109.47130 * 240.00174 * 2 1 3 33 33 H 1.08997 * 109.46756 * 119.99517 * 2 1 3 34 34 H 1.08996 * 109.47179 * 280.50327 * 4 3 2 35 35 H 1.08997 * 109.46983 * 40.51142 * 4 3 2 36 36 H 0.96695 * 114.00715 * 304.72028 * 7 5 4 37 37 H 0.97000 * 119.99964 * 179.97438 * 11 10 8 38 38 H 1.09004 * 110.96876 * 335.76844 * 18 16 3 39 39 H 1.08999 * 110.97477 * 212.03724 * 18 16 3 40 40 H 1.08995 * 110.24581 * 144.40375 * 19 18 16 41 41 H 1.09001 * 110.24658 * 266.39732 * 19 18 16 42 42 H 1.07993 * 120.04306 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.96463 * 180.29943 * 23 22 21 44 44 H 1.08000 * 119.93011 * 179.74378 * 24 23 22 45 45 H 1.07998 * 119.96342 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.03697 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5783 2.0994 -1.2054 5 6 1.6685 3.6079 -0.9659 6 1 2.6851 3.8690 -0.6719 7 8 0.7615 3.9802 0.0737 8 6 1.3081 4.3400 -2.2329 9 1 1.0418 3.7849 -3.1202 10 6 1.3184 5.7185 -2.2592 11 7 1.6421 6.3945 -1.1785 12 14 0.8723 6.6260 -3.8298 13 1 -0.5899 6.8840 -3.8541 14 1 1.6037 7.9175 -3.8800 15 1 1.2485 5.7981 -5.0038 16 6 3.4822 1.4263 0.1306 17 1 3.8529 2.4372 -0.0389 18 6 3.9157 0.9177 1.5249 19 6 4.1907 -0.5764 1.2447 20 7 4.5194 -0.6529 -0.1835 21 6 5.1584 -1.7402 -0.7895 22 6 5.3411 -1.7611 -2.1659 23 6 5.9777 -2.8331 -2.7603 24 6 6.4222 -3.8903 -1.9877 25 6 6.2362 -3.8754 -0.6175 26 6 5.6059 -2.8036 -0.0163 27 6 4.1276 0.4558 -0.8348 28 8 4.2713 0.6506 -2.0233 29 1 -0.3634 0.6132 0.8246 30 1 -0.3634 0.4076 -0.9434 31 1 -0.3634 -1.0208 0.1187 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2180 1.8259 -2.0445 35 1 0.5470 1.8284 -1.4312 36 1 -0.1534 3.7124 -0.0879 37 1 1.6497 7.3643 -1.1971 38 1 3.1114 1.0368 2.2510 39 1 4.8202 1.4244 1.8612 40 1 5.0316 -0.9241 1.8446 41 1 3.3022 -1.1703 1.4596 42 1 4.9899 -0.9382 -2.7706 43 1 6.1245 -2.8478 -3.8302 44 1 6.9159 -4.7294 -2.4553 45 1 6.5841 -4.7028 -0.0169 46 1 5.4613 -2.7923 1.0539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:16 Heat of formation + Delta-G solvation = -57.059005 kcal Electronic energy + Delta-G solvation = -27797.547535 eV Core-core repulsion = 24072.727640 eV Total energy + Delta-G solvation = -3724.819895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.60604 -39.95036 -38.66031 -37.80214 -36.55301 -34.23216 -33.62205 -31.91796 -31.83168 -30.14099 -29.53251 -27.75769 -26.32657 -24.26789 -24.06697 -23.19197 -22.35607 -21.72905 -20.31120 -19.04487 -18.78807 -18.06968 -17.38932 -17.01567 -16.66532 -16.58977 -16.11788 -15.84592 -15.48353 -15.41925 -15.24628 -15.01047 -14.71566 -14.56964 -14.35503 -14.31576 -13.83863 -13.59901 -13.25385 -13.11897 -12.97569 -12.85630 -12.78018 -12.64429 -12.50493 -12.30713 -12.21789 -12.08576 -11.96797 -11.72440 -11.14360 -11.09456 -10.99112 -10.70010 -10.10927 -9.93759 -9.24306 -8.95035 -8.14128 -6.39192 0.22191 0.41315 1.36449 1.37760 1.39146 1.48587 1.70335 2.36452 2.79389 2.89299 3.11402 3.19233 3.40222 3.83609 3.95280 3.97101 3.99235 4.06126 4.18253 4.27864 4.30520 4.36574 4.40525 4.50102 4.54068 4.57572 4.61002 4.64161 4.72143 4.85319 4.86095 5.05539 5.07644 5.10065 5.14319 5.20635 5.32136 5.43565 5.56039 5.59071 5.60203 5.71159 5.85184 5.95901 6.07288 6.12346 6.14388 6.71551 6.87694 7.33987 7.63480 8.90105 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.003583 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.976748 B = 7813.666183 C = 8517.254154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 N -0.490 5.490 4 C 0.036 3.964 5 C 0.250 3.750 6 H 0.017 0.983 7 O -0.563 6.563 8 C -0.591 4.591 9 H 0.048 0.952 10 C 0.030 3.970 11 N -0.894 5.894 12 Si 0.955 3.045 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.048 3.952 17 H 0.088 0.912 18 C -0.112 4.112 19 C 0.090 3.910 20 N -0.553 5.553 21 C 0.146 3.854 22 C -0.196 4.196 23 C -0.103 4.103 24 C -0.148 4.148 25 C -0.088 4.088 26 C -0.154 4.154 27 C 0.482 3.518 28 O -0.551 6.551 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.003 0.997 33 H 0.109 0.891 34 H 0.017 0.983 35 H 0.078 0.922 36 H 0.351 0.649 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 -23.020 8.391 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 N -0.214 5.214 4 C -0.092 4.092 5 C 0.192 3.808 6 H 0.035 0.965 7 O -0.366 6.366 8 C -0.630 4.630 9 H 0.066 0.934 10 C -0.173 4.173 11 N -0.531 5.531 12 Si 0.780 3.220 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.198 1.198 16 C -0.064 4.064 17 H 0.106 0.894 18 C -0.150 4.150 19 C -0.030 4.030 20 N -0.277 5.277 21 C 0.052 3.948 22 C -0.216 4.216 23 C -0.121 4.121 24 C -0.166 4.166 25 C -0.106 4.106 26 C -0.174 4.174 27 C 0.270 3.730 28 O -0.428 6.428 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.021 0.979 33 H 0.126 0.874 34 H 0.035 0.965 35 H 0.096 0.904 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.180 0.820 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.013 -22.240 8.542 24.835 hybrid contribution -0.273 0.600 -2.568 2.652 sum 6.740 -21.640 5.974 23.440 Atomic orbital electron populations 1.21799 0.93398 1.02843 1.02087 1.22490 0.97642 0.88120 1.00568 1.62564 1.05982 1.14392 1.38471 1.22881 0.99847 0.96721 0.89740 1.18956 0.89122 0.87211 0.85505 0.96513 1.86522 1.19804 1.83346 1.46945 1.22013 1.49869 0.92650 0.98438 0.93405 1.25812 0.93890 0.98509 0.99044 1.70197 1.46575 1.07090 1.29225 0.85634 0.78783 0.77869 0.79743 1.19239 1.20476 1.19819 1.22711 0.89170 0.98136 0.96402 0.89382 1.22751 1.04484 0.93633 0.94130 1.22779 1.03995 0.98202 0.78042 1.46039 1.54697 1.15224 1.11692 1.18138 0.96094 0.88426 0.92137 1.21611 1.04188 1.01419 0.94381 1.21246 0.96879 0.93206 1.00781 1.21480 1.01594 0.98964 0.94602 1.21401 0.96440 0.97882 0.94902 1.21127 1.02273 0.93200 1.00825 1.22599 0.77497 0.84250 0.88633 1.90598 1.56001 1.78787 1.17393 0.90982 0.94229 0.89953 0.97904 0.87354 0.96467 0.90382 0.80438 0.92914 0.85865 0.87722 0.86001 0.87908 0.86722 0.85112 0.83261 0.82000 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.60 71.98 0.69 -2.92 16 2 C 0.04 1.08 4.57 86.30 0.39 1.48 16 3 N -0.49 -17.18 4.35 -870.92 -3.79 -20.97 16 4 C 0.04 1.59 4.32 86.30 0.37 1.97 16 5 C 0.25 13.38 2.91 29.85 0.09 13.46 16 6 H 0.02 1.03 6.69 -2.39 -0.02 1.01 16 7 O -0.56 -29.58 12.67 -148.98 -1.89 -31.46 16 8 C -0.59 -34.60 8.79 25.60 0.22 -34.37 16 9 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 10 C 0.03 1.77 5.40 84.65 0.46 2.22 16 11 N -0.89 -54.82 12.84 21.45 0.28 -54.54 16 12 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 16 C 0.05 1.63 3.01 44.92 0.14 1.76 16 17 H 0.09 3.61 6.59 -2.39 -0.02 3.60 16 18 C -0.11 -2.31 6.37 31.65 0.20 -2.11 16 19 C 0.09 1.47 5.60 86.83 0.49 1.96 16 20 N -0.55 -14.67 3.02 -627.62 -1.90 -16.57 16 21 C 0.15 3.81 6.60 38.15 0.25 4.06 16 22 C -0.20 -5.98 9.29 22.39 0.21 -5.78 16 23 C -0.10 -2.41 10.04 22.25 0.22 -2.19 16 24 C -0.15 -2.52 10.04 22.29 0.22 -2.30 16 25 C -0.09 -1.29 10.04 22.25 0.22 -1.07 16 26 C -0.15 -2.70 9.41 22.39 0.21 -2.49 16 27 C 0.48 17.31 5.44 87.91 0.48 17.79 16 28 O -0.55 -25.08 13.61 -3.06 -0.04 -25.13 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.13 6.41 -2.38 -0.02 1.11 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.00 0.09 7.11 -2.39 -0.02 0.07 16 33 H 0.11 2.27 4.84 -2.39 -0.01 2.26 16 34 H 0.02 0.86 6.53 -2.39 -0.02 0.84 16 35 H 0.08 3.30 5.74 -2.39 -0.01 3.28 16 36 H 0.35 16.28 9.02 -74.06 -0.67 15.61 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.12 2.23 8.08 -2.38 -0.02 2.21 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.12 1.17 7.29 -2.39 -0.02 1.15 16 41 H 0.10 1.30 6.10 -2.39 -0.01 1.29 16 42 H 0.11 4.43 5.23 -2.91 -0.02 4.41 16 43 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.16 1.67 6.77 -2.91 -0.02 1.66 16 Total: -1.00 -79.18 359.83 -0.10 -79.28 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.34 Total: 30.39 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 4.87 Total: -8.51 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -5.41 Total: -92.08 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -1.93 Total: -56.59 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -79.18 -0.10 -79.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.220 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds