Wall clock time and date at job start Tue Mar 31 2020 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99803 * 2 1 4 4 C 1.52999 * 109.46743 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47317 * 64.99983 * 4 3 2 6 6 C 1.37110 * 119.99976 * 94.59588 * 5 4 3 7 7 H 1.07998 * 119.99946 * 212.24899 * 6 5 4 8 8 C 1.38944 * 119.99683 * 32.24453 * 6 5 4 9 9 N 1.31414 * 120.00336 * 26.24179 * 8 6 5 10 10 Si 1.86807 * 119.99773 * 206.23688 * 8 6 5 11 11 H 1.48498 * 109.46861 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46910 * 120.00073 * 10 8 6 13 13 H 1.48494 * 109.47332 * 240.00140 * 10 8 6 14 14 C 1.34773 * 120.00226 * 274.59475 * 5 4 3 15 15 O 1.21292 * 119.99899 * 5.68446 * 14 5 4 16 16 C 1.50705 * 120.00290 * 185.68789 * 14 5 4 17 17 H 1.08998 * 109.46927 * 318.99072 * 16 14 5 18 18 C 1.53001 * 109.46749 * 78.98718 * 16 14 5 19 19 N 1.46893 * 109.47324 * 198.98794 * 16 14 5 20 20 C 1.47900 * 110.99959 * 155.91246 * 19 16 14 21 21 C 1.54604 * 102.63015 * 94.66196 * 20 19 16 22 22 C 1.51580 * 102.81527 * 25.60732 * 21 20 19 23 23 C 1.37911 * 131.57370 * 163.76872 * 22 21 20 24 24 C 1.38306 * 120.08551 * 180.28319 * 23 22 21 25 25 C 1.38307 * 119.87889 * 0.03797 * 24 23 22 26 26 C 1.37903 * 120.26394 * 359.84717 * 25 24 23 27 27 C 1.38964 * 107.94451 * 343.81180 * 22 21 20 28 28 H 1.08994 * 109.46520 * 299.99948 * 1 2 3 29 29 H 1.09002 * 109.46970 * 59.99742 * 1 2 3 30 30 H 1.08997 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47003 * 60.00448 * 3 2 1 32 32 H 1.09001 * 109.46961 * 300.00095 * 3 2 1 33 33 H 1.09001 * 109.47093 * 304.99712 * 4 3 2 34 34 H 1.09006 * 109.46779 * 184.99985 * 4 3 2 35 35 H 0.97004 * 119.99804 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47058 * 187.41613 * 18 16 14 37 37 H 1.08999 * 109.47541 * 307.41274 * 18 16 14 38 38 H 1.08997 * 109.47359 * 67.41811 * 18 16 14 39 39 H 1.09004 * 110.78011 * 212.94865 * 20 19 16 40 40 H 1.08995 * 110.78017 * 336.18639 * 20 19 16 41 41 H 1.08997 * 110.74441 * 143.93518 * 21 20 19 42 42 H 1.09001 * 110.74221 * 267.27896 * 21 20 19 43 43 H 1.08003 * 119.95965 * 0.29688 * 23 22 21 44 44 H 1.08001 * 120.06073 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.86833 * 179.87325 * 25 24 23 46 46 H 1.08002 * 119.89855 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.3567 1.3499 -2.3100 7 1 4.1841 1.0142 -3.3218 8 6 4.9649 2.5777 -2.0795 9 7 5.6341 2.7810 -0.9669 10 14 4.8315 3.9395 -3.3513 11 1 4.0302 3.4611 -4.5064 12 1 4.1672 5.1206 -2.7439 13 1 6.1903 4.3194 -3.8142 14 6 4.0062 -0.7782 -1.3654 15 8 3.5728 -1.4720 -0.4698 16 6 4.5788 -1.4177 -2.6041 17 1 4.2567 -0.8595 -3.4831 18 6 6.1067 -1.4061 -2.5241 19 7 4.1042 -2.8043 -2.7034 20 6 4.1383 -3.2771 -4.1044 21 6 5.5079 -3.9896 -4.1874 22 6 5.7642 -4.3940 -2.7492 23 6 6.6473 -5.2975 -2.1962 24 6 6.6780 -5.4874 -0.8265 25 6 5.8207 -4.7700 -0.0121 26 6 4.9374 -3.8636 -0.5599 27 6 4.9027 -3.6642 -1.9392 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9785 2.1766 0.0889 35 1 6.0583 3.6384 -0.8058 36 1 6.5227 -1.7465 -3.4724 37 1 6.4522 -0.3929 -2.3187 38 1 6.4338 -2.0707 -1.7245 39 1 3.3257 -3.9778 -4.2960 40 1 4.0937 -2.4369 -4.7973 41 1 5.4480 -4.8676 -4.8305 42 1 6.2790 -3.3040 -4.5389 43 1 7.3159 -5.8574 -2.8333 44 1 7.3694 -6.1953 -0.3939 45 1 5.8434 -4.9199 1.0572 46 1 4.2709 -3.3063 0.0816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837234644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:11 Heat of formation + Delta-G solvation = -29.462126 kcal Electronic energy + Delta-G solvation = -28566.885004 eV Core-core repulsion = 24843.261799 eV Total energy + Delta-G solvation = -3723.623205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.13117 -40.12999 -38.47036 -37.58718 -36.48122 -33.73047 -33.46117 -31.92559 -30.54432 -30.03687 -29.11485 -27.19502 -26.70804 -25.19267 -23.86971 -23.38046 -21.99798 -21.70001 -20.62370 -18.88313 -17.98729 -17.34841 -17.17334 -16.91615 -16.48174 -16.39673 -16.11424 -16.00573 -15.93541 -15.55081 -15.21775 -14.69962 -14.50534 -14.13503 -13.93465 -13.54850 -13.46322 -13.38822 -13.25068 -13.10768 -13.01907 -12.87481 -12.68608 -12.55436 -12.51863 -12.22703 -12.09645 -12.07230 -11.87754 -11.82769 -11.56534 -10.94532 -10.47592 -10.35185 -9.78420 -9.60311 -9.38697 -8.67985 -8.26476 -5.91093 0.49110 0.60216 1.42307 1.50789 1.61675 2.23027 2.33388 2.64671 2.93637 3.02288 3.17123 3.28244 3.72685 3.95635 4.08993 4.16838 4.26448 4.28266 4.29741 4.34167 4.38259 4.42002 4.50735 4.56563 4.58792 4.65327 4.68362 4.74996 4.78403 4.81459 4.83753 4.96663 5.03248 5.10030 5.11300 5.20400 5.29113 5.32838 5.53279 5.58788 5.70903 5.73337 5.99215 6.08273 6.14283 6.43284 6.51516 6.55736 7.25268 7.77529 8.25415 8.76775 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.005236 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.700306 B = 5346.426113 C = 6362.757238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.392 6.392 3 C 0.058 3.942 4 C 0.124 3.876 5 N -0.454 5.454 6 C -0.346 4.346 7 H 0.092 0.908 8 C 0.007 3.993 9 N -0.888 5.888 10 Si 0.970 3.030 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.473 3.527 15 O -0.585 6.585 16 C 0.096 3.904 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.501 5.501 20 C 0.046 3.954 21 C -0.099 4.099 22 C -0.152 4.152 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.132 4.132 27 C 0.096 3.904 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.106 0.894 35 H 0.271 0.729 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.132 0.868 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -8.824 -5.606 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C -0.020 4.020 4 C -0.001 4.001 5 N -0.175 5.175 6 C -0.473 4.473 7 H 0.109 0.891 8 C -0.196 4.196 9 N -0.526 5.526 10 Si 0.794 3.206 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.261 3.739 15 O -0.469 6.469 16 C -0.013 4.013 17 H 0.117 0.883 18 C -0.206 4.206 19 N -0.219 5.219 20 C -0.081 4.081 21 C -0.136 4.136 22 C -0.154 4.154 23 C -0.117 4.117 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.152 4.152 27 C 0.000 4.000 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.150 0.850 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.782 -9.119 -4.903 10.383 hybrid contribution 0.319 1.455 -0.198 1.503 sum -0.463 -7.664 -5.101 9.218 Atomic orbital electron populations 1.22804 0.81246 1.02672 1.00117 1.88216 1.19944 1.27719 1.95258 1.22931 0.94694 0.84796 0.99531 1.21315 0.91498 1.00320 0.86930 1.43514 1.57458 1.03705 1.12787 1.19614 1.39047 1.01098 0.87566 0.89074 1.25966 0.93446 1.01174 0.99027 1.70086 1.29144 1.24910 1.28464 0.85237 0.78001 0.78342 0.78981 1.18377 1.20478 1.20763 1.20652 0.81410 0.82688 0.89109 1.90430 1.50651 1.62481 1.43292 1.21405 0.94467 0.87665 0.97800 0.88336 1.22116 0.94457 1.01986 1.02026 1.59844 1.51732 1.00881 1.09397 1.23343 0.97626 1.00314 0.86770 1.21747 0.97601 1.01757 0.92528 1.21345 0.97020 1.00311 0.96749 1.20674 0.98158 0.97561 0.95285 1.21336 0.99924 1.00774 0.93376 1.21175 0.96015 0.96314 1.00626 1.21116 1.00536 0.99327 0.94183 1.19439 0.92527 0.94776 0.93296 0.93088 0.94167 0.89841 0.92137 0.93923 0.94964 0.87623 0.91929 0.90191 0.92732 0.93905 0.88818 0.88668 0.87280 0.89340 0.83464 0.83061 0.85002 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.39 -17.62 8.74 -130.84 -1.14 -18.76 16 3 C 0.06 2.48 6.28 71.98 0.45 2.93 16 4 C 0.12 6.12 5.45 86.38 0.47 6.59 16 5 N -0.45 -23.13 2.56 -635.53 -1.63 -24.75 16 6 C -0.35 -17.09 7.98 84.04 0.67 -16.42 16 7 H 0.09 4.33 6.50 -2.91 -0.02 4.31 16 8 C 0.01 0.33 4.83 84.92 0.41 0.74 16 9 N -0.89 -45.80 11.47 21.66 0.25 -45.55 16 10 Si 0.97 38.16 29.63 68.60 2.03 40.20 16 11 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 12 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 14 C 0.47 23.86 6.50 87.66 0.57 24.43 16 15 O -0.59 -32.06 11.39 15.07 0.17 -31.89 16 16 C 0.10 4.01 2.01 44.17 0.09 4.10 16 17 H 0.10 4.01 5.82 -2.39 -0.01 3.99 16 18 C -0.15 -5.85 7.90 71.98 0.57 -5.28 16 19 N -0.50 -19.32 4.69 -669.01 -3.14 -22.45 16 20 C 0.05 1.27 6.98 86.66 0.60 1.88 16 21 C -0.10 -2.35 6.28 30.67 0.19 -2.15 16 22 C -0.15 -4.55 5.48 -19.49 -0.11 -4.65 16 23 C -0.10 -2.53 10.03 22.21 0.22 -2.31 16 24 C -0.14 -3.55 10.06 22.30 0.22 -3.33 16 25 C -0.12 -3.96 10.02 22.21 0.22 -3.74 16 26 C -0.13 -5.34 8.94 22.47 0.20 -5.14 16 27 C 0.10 3.62 3.61 38.28 0.14 3.75 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.03 1.71 7.65 -2.39 -0.02 1.69 16 34 H 0.11 5.39 5.38 -2.38 -0.01 5.38 16 35 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 36 H 0.08 2.62 6.13 -2.39 -0.01 2.61 16 37 H 0.05 2.46 7.46 -2.39 -0.02 2.44 16 38 H 0.04 1.81 6.05 -2.39 -0.01 1.80 16 39 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.09 2.37 7.37 -2.39 -0.02 2.35 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.09 1.98 6.64 -2.39 -0.02 1.96 16 43 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.11 5.27 5.70 -2.91 -0.02 5.25 16 Total: -1.00 -66.09 357.35 3.71 -62.39 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.98 Total: 37.25 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.18 Total: 3.58 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.52 Total: -92.76 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.97 Total: -50.65 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.20 kcal Total: -66.09 3.71 -62.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.924 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds