Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 N 1.46495 * 109.47058 * 119.99878 * 2 1 3 5 5 C 1.34784 * 119.99758 * 85.00086 * 4 2 1 6 6 O 1.21275 * 120.00090 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99800 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47255 * 59.99832 * 7 5 4 9 9 C 1.53002 * 109.47087 * 299.99906 * 7 5 4 10 10 N 1.46497 * 109.46862 * 180.02562 * 7 5 4 11 11 C 1.34780 * 119.99887 * 204.99845 * 10 7 5 12 12 O 1.21276 * 119.99901 * 0.02562 * 11 10 7 13 13 C 1.50700 * 119.99976 * 179.72266 * 11 10 7 14 14 C 1.50698 * 109.47242 * 179.97438 * 13 11 10 15 15 C 1.37641 * 120.13256 * 265.00387 * 14 13 11 16 16 C 1.38606 * 120.24913 * 179.97438 * 15 14 13 17 17 C 1.38663 * 120.50512 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.24335 * 0.02562 * 17 16 15 19 19 C 1.40700 * 120.12498 * 84.72937 * 14 13 11 20 20 C 1.41398 * 120.24589 * 359.97438 * 19 14 13 21 21 H 1.08004 * 119.99534 * 333.89952 * 20 19 14 22 22 C 1.39944 * 120.00279 * 153.89400 * 20 19 14 23 23 N 1.30828 * 119.99966 * 343.72466 * 22 20 19 24 24 Si 1.86800 * 120.00082 * 163.72015 * 22 20 19 25 25 H 1.48501 * 109.46929 * 60.00254 * 24 22 20 26 26 H 1.48494 * 109.46945 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46900 * 300.00320 * 24 22 20 28 28 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46943 * 300.00003 * 1 2 3 30 30 H 1.09001 * 109.47166 * 59.99993 * 1 2 3 31 31 H 1.08997 * 109.47203 * 240.00096 * 2 1 3 32 32 H 1.08999 * 109.47177 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47115 * 300.00038 * 3 2 1 34 34 H 1.08997 * 109.47012 * 59.99980 * 3 2 1 35 35 H 0.97003 * 120.00533 * 264.99865 * 4 2 1 36 36 H 1.09001 * 109.47114 * 60.00370 * 9 7 5 37 37 H 1.09001 * 109.46962 * 180.02562 * 9 7 5 38 38 H 1.08992 * 109.47425 * 300.00205 * 9 7 5 39 39 H 0.96999 * 120.00502 * 25.00405 * 10 7 5 40 40 H 1.08997 * 109.47383 * 300.00561 * 13 11 10 41 41 H 1.08999 * 109.46836 * 60.00392 * 13 11 10 42 42 H 1.07997 * 119.87377 * 0.02562 * 15 14 13 43 43 H 1.08004 * 119.74971 * 180.02562 * 16 15 14 44 44 H 1.07997 * 119.88011 * 180.02562 * 17 16 15 45 45 H 1.08004 * 120.12267 * 179.97438 * 18 17 16 46 46 H 0.96996 * 119.99922 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 8 1.8591 -2.6677 0.2023 7 6 2.6499 -2.7426 2.4246 8 1 1.9778 -2.5436 3.2593 9 6 4.0527 -2.2371 2.7678 10 7 2.6997 -4.1844 2.1699 11 6 2.6210 -5.0533 3.1972 12 8 2.5086 -4.6416 4.3324 13 6 2.6659 -6.5366 2.9347 14 6 2.5613 -7.2813 4.2406 15 6 3.7004 -7.6956 4.8928 16 6 3.6070 -8.3803 6.0944 17 6 2.3682 -8.6563 6.6528 18 6 1.2162 -8.2526 6.0178 19 6 1.2991 -7.5507 4.8007 20 6 0.1222 -7.1244 4.1429 21 1 0.1523 -6.2711 3.4815 22 6 -1.0813 -7.8082 4.3488 23 7 -1.0716 -9.0049 4.8775 24 14 -2.7016 -7.0123 3.8688 25 1 -2.6984 -6.7223 2.4124 26 1 -3.8202 -7.9354 4.1877 27 1 -2.8743 -5.7461 4.6253 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2491 -0.1823 1.9895 36 1 4.0161 -1.1643 2.9572 37 1 4.4166 -2.7513 3.6574 38 1 4.7248 -2.4360 1.9332 39 1 2.7893 -4.5138 1.2620 40 1 1.8338 -6.8166 2.2886 41 1 3.6066 -6.7907 2.4462 42 1 4.6705 -7.4857 4.4672 43 1 4.5060 -8.7013 6.5995 44 1 2.3072 -9.1901 7.5897 45 1 0.2523 -8.4690 6.4543 46 1 -1.9058 -9.4786 5.0205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839904466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -92.089998 kcal Electronic energy + Delta-G solvation = -26650.067022 eV Core-core repulsion = 22923.728069 eV Total energy + Delta-G solvation = -3726.338953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49507 -40.42914 -39.08913 -37.13170 -35.91849 -35.49868 -33.64673 -32.88247 -31.36203 -30.98436 -28.39523 -28.10926 -26.88137 -25.59975 -22.86360 -22.72601 -21.83783 -21.33636 -21.03912 -19.12168 -18.71226 -17.77676 -17.32664 -17.20536 -16.62789 -16.41229 -16.12084 -15.91500 -15.36655 -15.25174 -15.06842 -14.86635 -14.52532 -14.37375 -13.96585 -13.66914 -13.52060 -13.37939 -13.33557 -13.16612 -13.07453 -12.92488 -12.77142 -12.74292 -12.55083 -12.48221 -12.30165 -12.12917 -11.92872 -11.31504 -11.21773 -11.03673 -10.99403 -10.78964 -10.23089 -10.08696 -9.21514 -9.15468 -8.60026 -6.29587 0.99573 1.13917 1.32963 1.43045 1.45103 1.52389 1.73950 1.93788 2.18421 2.47726 2.78369 3.54975 3.76396 3.94885 4.00095 4.06879 4.16657 4.19329 4.31346 4.41532 4.45571 4.62130 4.65210 4.71113 4.72829 4.74260 4.80611 4.82774 4.92977 4.99992 5.07293 5.18032 5.20074 5.26003 5.31536 5.38041 5.44339 5.49492 5.55701 5.78039 6.04680 6.17434 6.22674 6.42722 6.43178 6.59036 6.74984 6.99586 7.10419 7.11781 7.38016 8.36266 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.003674 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.724369 B = 7619.358441 C = 9298.477703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 C -0.151 4.151 4 N -0.708 5.708 5 C 0.517 3.483 6 O -0.570 6.570 7 C 0.121 3.879 8 H 0.099 0.901 9 C -0.148 4.148 10 N -0.716 5.716 11 C 0.524 3.476 12 O -0.565 6.565 13 C -0.070 4.070 14 C -0.186 4.186 15 C -0.090 4.090 16 C -0.240 4.240 17 C -0.117 4.117 18 C -0.193 4.193 19 C 0.096 3.904 20 C -0.484 4.484 21 H 0.067 0.933 22 C 0.038 3.962 23 N -0.825 5.825 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.263 1.263 27 H -0.269 1.269 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 18.996 -9.571 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 C -0.209 4.209 4 N -0.361 5.361 5 C 0.303 3.697 6 O -0.449 6.449 7 C 0.012 3.988 8 H 0.117 0.883 9 C -0.206 4.206 10 N -0.371 5.371 11 C 0.312 3.688 12 O -0.442 6.442 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.108 4.108 16 C -0.259 4.259 17 C -0.135 4.135 18 C -0.213 4.213 19 C 0.094 3.906 20 C -0.514 4.514 21 H 0.085 0.915 22 C -0.176 4.176 23 N -0.452 5.452 24 Si 0.789 3.211 25 H -0.184 1.184 26 H -0.187 1.187 27 H -0.194 1.194 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.796 18.664 -9.422 21.696 hybrid contribution -0.967 -0.164 0.068 0.983 sum 4.829 18.500 -9.354 21.285 Atomic orbital electron populations 1.22194 0.95474 1.01129 1.03425 1.21079 0.94065 0.94361 0.87614 1.22025 1.02055 0.92583 1.04213 1.45987 1.66437 1.05672 1.17964 1.20653 0.76862 0.83470 0.88717 1.90685 1.51438 1.66763 1.35981 1.20837 1.00465 0.81650 0.95809 0.88309 1.22069 0.93157 1.02873 1.02496 1.45786 1.75735 1.04891 1.10674 1.21046 0.74134 0.89310 0.84278 1.90649 1.49569 1.80305 1.23701 1.20266 1.04396 0.89225 0.97109 1.19504 0.93217 1.07945 0.98119 1.20735 0.96833 0.97897 0.95337 1.20731 0.96458 1.09280 0.99480 1.20957 0.93348 1.00134 0.99058 1.21303 0.97084 1.05857 0.97015 1.17714 0.92612 0.89595 0.90683 1.19573 0.93540 1.12842 1.25456 0.91519 1.26601 1.03840 0.94099 0.93069 1.69868 1.30434 1.10719 1.34163 0.85482 0.76929 0.79027 0.79691 1.18439 1.18717 1.19400 0.95182 0.91466 0.89948 0.91078 0.91298 0.89734 0.90730 0.74658 0.88146 0.92424 0.91126 0.75047 0.89056 0.86896 0.86386 0.86512 0.87577 0.88514 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16 2 C 0.13 1.94 3.18 44.99 0.14 2.08 16 3 C -0.15 -1.12 9.38 71.98 0.68 -0.44 16 4 N -0.71 -11.37 4.97 -442.53 -2.20 -13.57 16 5 C 0.52 12.52 7.19 87.66 0.63 13.15 16 6 O -0.57 -17.93 15.50 -3.01 -0.05 -17.98 16 7 C 0.12 3.11 2.99 44.25 0.13 3.24 16 8 H 0.10 2.85 7.58 -2.39 -0.02 2.83 16 9 C -0.15 -2.85 9.38 71.98 0.68 -2.18 16 10 N -0.72 -22.30 4.95 -446.10 -2.21 -24.51 16 11 C 0.52 20.75 7.40 87.66 0.65 21.40 16 12 O -0.56 -26.89 15.70 -3.02 -0.05 -26.93 16 13 C -0.07 -2.83 5.18 29.10 0.15 -2.68 16 14 C -0.19 -9.15 4.43 -19.40 -0.09 -9.23 16 15 C -0.09 -4.08 9.66 22.22 0.21 -3.87 16 16 C -0.24 -10.99 10.05 22.46 0.23 -10.77 16 17 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 18 C -0.19 -10.86 8.69 22.73 0.20 -10.66 16 19 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 20 C -0.48 -27.10 8.14 23.46 0.19 -26.91 16 21 H 0.07 3.69 6.67 -2.91 -0.02 3.67 16 22 C 0.04 2.03 5.16 85.26 0.44 2.47 16 23 N -0.83 -44.91 10.96 21.83 0.24 -44.67 16 24 Si 0.97 40.86 29.59 68.60 2.03 42.88 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.42 4.21 8.02 -92.71 -0.74 3.46 16 36 H 0.10 1.21 7.56 -2.39 -0.02 1.19 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.41 11.78 7.79 -92.71 -0.72 11.06 16 40 H 0.09 3.78 7.08 -2.39 -0.02 3.77 16 41 H 0.11 3.62 8.05 -2.39 -0.02 3.61 16 42 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 43 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 45 H 0.10 5.69 6.20 -2.91 -0.02 5.67 16 46 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 Total: -1.00 -74.06 383.03 2.32 -71.73 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.47 Total: 39.67 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 5.03 Total: -26.62 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -4.17 Total: -82.75 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -0.09 Total: -44.91 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -74.06 2.32 -71.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839904466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.359 kcal (2) G-P(sol) polarization free energy of solvation -74.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds