Wall clock time and date at job start Tue Mar 31 2020 13:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21301 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.40102 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.28012 * 119.99751 * 179.97438 * 13 12 10 15 15 C 1.50698 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.46755 * 115.00463 * 16 14 13 18 18 C 1.53006 * 109.46605 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.46787 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99805 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00169 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46881 * 90.00135 * 23 21 19 25 25 H 1.48494 * 109.47384 * 210.00110 * 23 21 19 26 26 H 1.48496 * 109.47226 * 330.00290 * 23 21 19 27 27 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47081 * 89.99486 * 15 14 13 38 38 H 1.08991 * 109.47472 * 209.99841 * 15 14 13 39 39 H 1.09007 * 109.46969 * 329.99731 * 15 14 13 40 40 H 1.08998 * 109.47432 * 235.00180 * 16 14 13 41 41 H 1.09004 * 109.47487 * 355.00789 * 16 14 13 42 42 H 1.08998 * 109.47070 * 299.99498 * 17 16 14 43 43 H 1.08997 * 109.47112 * 60.00280 * 17 16 14 44 44 H 1.08998 * 109.47130 * 299.99624 * 18 17 16 45 45 H 1.08997 * 109.47024 * 60.00389 * 18 17 16 46 46 H 0.97010 * 119.99925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9255 0.1487 -2.3340 12 7 5.1295 -1.5889 -1.6603 13 7 5.2871 -2.0441 -2.9759 14 6 5.9578 -3.1094 -3.2085 15 6 6.5774 -3.8741 -2.0673 16 6 6.1279 -3.5987 -4.6237 17 6 7.6051 -3.5240 -5.0150 18 6 7.7778 -4.0214 -6.4516 19 6 9.2328 -3.9473 -6.8373 20 1 9.9614 -3.5825 -6.1286 21 6 9.6337 -4.3454 -8.0950 22 7 8.7463 -4.7893 -8.9582 23 14 11.4372 -4.2543 -8.5728 24 1 12.1065 -5.5338 -8.2259 25 1 11.5508 -4.0167 -10.0342 26 1 12.0883 -3.1400 -7.8382 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 5.5282 -2.0811 -0.9257 37 1 5.8694 -4.6179 -1.7016 38 1 7.4825 -4.3731 -2.4132 39 1 6.8282 -3.1842 -1.2615 40 1 5.7848 -4.6308 -4.6950 41 1 5.5416 -2.9735 -5.2972 42 1 7.9482 -2.4919 -4.9438 43 1 8.1914 -4.1491 -4.3415 44 1 7.4349 -5.0536 -6.5224 45 1 7.1915 -3.3967 -7.1253 46 1 9.0284 -5.0697 -9.8430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841619822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:32 Heat of formation + Delta-G solvation = -25.706855 kcal Electronic energy + Delta-G solvation = -25214.354501 eV Core-core repulsion = 21490.894137 eV Total energy + Delta-G solvation = -3723.460364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68964 -39.42380 -37.76739 -37.35925 -34.61159 -33.28409 -32.81834 -31.21803 -30.39483 -28.92292 -27.94972 -27.42535 -26.90595 -23.73670 -22.43713 -22.25927 -20.65380 -20.25719 -19.36561 -18.26051 -17.23018 -16.65286 -16.45193 -16.09195 -15.94064 -15.82660 -15.22597 -14.74472 -14.52016 -14.43232 -14.13493 -13.86278 -13.76100 -13.63945 -13.32059 -12.77319 -12.47889 -12.37209 -12.32607 -12.01481 -11.76504 -11.65883 -11.45445 -11.40119 -11.28110 -11.14473 -10.80625 -10.65618 -10.53028 -10.02536 -9.87538 -9.64379 -9.35010 -9.12391 -9.08556 -8.51622 -8.40600 -8.31784 -5.96995 -3.99190 1.01608 1.20365 1.99791 2.63257 2.94104 2.99231 3.33771 3.40241 3.43714 3.53006 4.32567 4.48260 4.49410 4.61987 4.68594 4.76957 4.79236 4.85644 4.94295 5.00872 5.03377 5.14000 5.17891 5.19506 5.25823 5.38803 5.39942 5.43242 5.71110 5.87509 5.90994 6.02803 6.04522 6.09265 6.13618 6.26616 6.49424 6.50617 6.71443 6.86223 7.08918 7.12374 7.21058 7.70636 7.72487 7.85689 8.03263 8.45269 8.55235 9.07814 9.64592 11.14293 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.001954 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.132695 B =14326.546329 C =14752.385589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.145 3.855 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.067 4.067 8 C -0.100 4.100 9 C -0.087 4.087 10 C 0.531 3.469 11 O -0.499 6.499 12 N -0.593 5.593 13 N -0.250 5.250 14 C 0.114 3.886 15 C -0.161 4.161 16 C -0.066 4.066 17 C -0.102 4.102 18 C 0.021 3.979 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.380 0.620 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 10.720 25.683 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.099 3.901 4 C -0.228 4.228 5 C -0.097 4.097 6 C -0.175 4.175 7 C -0.086 4.086 8 C -0.101 4.101 9 C -0.129 4.129 10 C 0.317 3.683 11 O -0.370 6.370 12 N -0.336 5.336 13 N -0.054 5.054 14 C -0.080 4.080 15 C -0.220 4.220 16 C -0.105 4.105 17 C -0.141 4.141 18 C -0.017 4.017 19 C -0.558 4.558 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.219 0.781 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.796 11.727 24.564 31.471 hybrid contribution 1.359 -0.677 0.491 1.596 sum -14.436 11.050 25.054 30.956 Atomic orbital electron populations 1.23059 0.78291 1.04032 1.01301 1.86058 1.21453 1.26851 1.88384 1.18764 0.91607 0.84344 0.95352 1.21184 0.99962 0.92338 1.09298 1.20938 0.94731 0.96908 0.97149 1.21011 0.93918 0.98331 1.04245 1.20872 0.99939 0.90998 0.96746 1.18549 0.90193 0.94415 1.06939 1.20440 1.01552 0.96663 0.94201 1.20406 0.77643 0.79101 0.91121 1.90729 1.45349 1.54844 1.46069 1.47059 1.54408 1.27328 1.04846 1.74674 1.17037 1.14185 0.99459 1.25461 0.92341 0.91334 0.98851 1.21397 1.03223 1.00670 0.96754 1.20692 1.00552 1.01271 0.88013 1.21631 0.91113 1.00845 1.00532 1.19112 0.96817 0.96457 0.89264 1.21243 0.93404 1.42731 0.98442 0.92728 1.25027 0.97435 0.95427 0.96645 1.69967 1.33373 1.43808 1.06275 0.86604 0.85492 0.78321 0.77639 1.20713 1.21248 1.19927 0.92513 0.88219 0.92696 0.85474 0.85817 0.85753 0.85338 0.87811 0.87509 0.78075 0.90050 0.88883 0.92090 0.89762 0.90102 0.93120 0.92994 0.96381 0.96335 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.45 9.63 -19.42 -0.19 -3.64 16 3 C 0.14 1.64 6.66 -39.22 -0.26 1.38 16 4 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 5 C -0.08 -0.70 10.04 -39.60 -0.40 -1.09 16 6 C -0.16 -1.42 10.04 -39.56 -0.40 -1.82 16 7 C -0.07 -0.67 9.68 -39.61 -0.38 -1.06 16 8 C -0.10 -1.11 4.39 -104.48 -0.46 -1.57 16 9 C -0.09 -0.85 5.55 -29.04 -0.16 -1.01 16 10 C 0.53 7.67 7.94 -10.98 -0.09 7.59 16 11 O -0.50 -9.67 16.37 5.54 0.09 -9.57 16 12 N -0.59 -8.07 6.09 31.22 0.19 -7.88 16 13 N -0.25 -4.24 10.93 35.60 0.39 -3.85 16 14 C 0.11 1.70 6.55 -78.91 -0.52 1.19 16 15 C -0.16 -1.74 9.46 36.00 0.34 -1.40 16 16 C -0.07 -1.11 5.60 -27.88 -0.16 -1.27 16 17 C -0.10 -2.05 5.03 -26.72 -0.13 -2.18 16 18 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 19 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 23 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.11 0.86 7.69 -51.93 -0.40 0.47 16 36 H 0.38 3.70 6.39 -182.60 -1.17 2.53 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.01 6.91 -51.93 -0.36 0.65 16 39 H 0.06 0.55 6.31 -51.92 -0.33 0.22 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.96 7.01 -51.93 -0.36 0.60 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -36.92 387.67 -8.41 -45.34 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.93 Total: -1.15 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.53 Total: -15.53 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 1.32 Total: -38.01 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.10 Total: -13.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.92 -8.41 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841619822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.632 kcal (2) G-P(sol) polarization free energy of solvation -36.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds