Wall clock time and date at job start Tue Mar 31 2020 13:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21301 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.40102 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.28012 * 119.99751 * 179.97438 * 13 12 10 15 15 C 1.50698 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.46755 * 115.00463 * 16 14 13 18 18 C 1.53006 * 109.46605 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.46787 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99805 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00169 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46881 * 90.00135 * 23 21 19 25 25 H 1.48494 * 109.47384 * 210.00110 * 23 21 19 26 26 H 1.48496 * 109.47226 * 330.00290 * 23 21 19 27 27 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47081 * 89.99486 * 15 14 13 38 38 H 1.08991 * 109.47472 * 209.99841 * 15 14 13 39 39 H 1.09007 * 109.46969 * 329.99731 * 15 14 13 40 40 H 1.08998 * 109.47432 * 235.00180 * 16 14 13 41 41 H 1.09004 * 109.47487 * 355.00789 * 16 14 13 42 42 H 1.08998 * 109.47070 * 299.99498 * 17 16 14 43 43 H 1.08997 * 109.47112 * 60.00280 * 17 16 14 44 44 H 1.08998 * 109.47130 * 299.99624 * 18 17 16 45 45 H 1.08997 * 109.47024 * 60.00389 * 18 17 16 46 46 H 0.97010 * 119.99925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9255 0.1487 -2.3340 12 7 5.1295 -1.5889 -1.6603 13 7 5.2871 -2.0441 -2.9759 14 6 5.9578 -3.1094 -3.2085 15 6 6.5774 -3.8741 -2.0673 16 6 6.1279 -3.5987 -4.6237 17 6 7.6051 -3.5240 -5.0150 18 6 7.7778 -4.0214 -6.4516 19 6 9.2328 -3.9473 -6.8373 20 1 9.9614 -3.5825 -6.1286 21 6 9.6337 -4.3454 -8.0950 22 7 8.7463 -4.7893 -8.9582 23 14 11.4372 -4.2543 -8.5728 24 1 12.1065 -5.5338 -8.2259 25 1 11.5508 -4.0167 -10.0342 26 1 12.0883 -3.1400 -7.8382 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 5.5282 -2.0811 -0.9257 37 1 5.8694 -4.6179 -1.7016 38 1 7.4825 -4.3731 -2.4132 39 1 6.8282 -3.1842 -1.2615 40 1 5.7848 -4.6308 -4.6950 41 1 5.5416 -2.9735 -5.2972 42 1 7.9482 -2.4919 -4.9438 43 1 8.1914 -4.1491 -4.3415 44 1 7.4349 -5.0536 -6.5224 45 1 7.1915 -3.3967 -7.1253 46 1 9.0284 -5.0697 -9.8430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841619822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:31 Heat of formation + Delta-G solvation = -49.320813 kcal Electronic energy + Delta-G solvation = -25215.378479 eV Core-core repulsion = 21490.894137 eV Total energy + Delta-G solvation = -3724.484342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46562 -40.45295 -38.79195 -38.23423 -36.27832 -34.67837 -33.99744 -32.77336 -31.07089 -29.99552 -28.95707 -28.57510 -27.82744 -25.54981 -23.24117 -23.06313 -22.17793 -21.47090 -20.57055 -18.97080 -18.53291 -18.09889 -17.44474 -17.34727 -16.64076 -16.57447 -16.51443 -16.23180 -15.72646 -15.38145 -15.27790 -15.00715 -14.90978 -14.58076 -14.21433 -14.03926 -13.66794 -13.45272 -13.23733 -13.18556 -12.89342 -12.87587 -12.74194 -12.58829 -12.40450 -12.33126 -12.25606 -12.02604 -11.78904 -11.49100 -11.40641 -11.19891 -11.13357 -10.86645 -10.51918 -9.83722 -9.71926 -9.11654 -8.17106 -6.27741 0.30476 0.49722 0.85190 1.41518 1.43274 1.54035 1.63070 1.86151 2.36414 2.43305 2.81465 3.16161 3.58200 3.63303 3.78140 3.85031 4.00820 4.09707 4.21835 4.23486 4.32258 4.34618 4.39696 4.42091 4.50219 4.55971 4.61428 4.65092 4.68156 4.71792 4.78820 4.98541 5.05064 5.11258 5.21997 5.25615 5.32632 5.35821 5.46275 5.56392 5.58226 5.79552 5.85625 5.89882 6.18836 6.28097 6.42580 6.63822 6.89714 7.41146 7.50949 8.94657 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.001954 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.132695 B =14326.546329 C =14752.385589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.123 3.877 4 C -0.220 4.220 5 C -0.085 4.085 6 C -0.166 4.166 7 C -0.080 4.080 8 C -0.125 4.125 9 C -0.076 4.076 10 C 0.527 3.473 11 O -0.558 6.558 12 N -0.581 5.581 13 N -0.299 5.299 14 C 0.120 3.880 15 C -0.158 4.158 16 C -0.061 4.061 17 C -0.086 4.086 18 C 0.022 3.978 19 C -0.541 4.541 20 H 0.061 0.939 21 C -0.004 4.004 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.401 0.599 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.003 0.997 45 H -0.015 1.015 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 10.843 28.152 33.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.239 4.239 5 C -0.102 4.102 6 C -0.184 4.184 7 C -0.098 4.098 8 C -0.126 4.126 9 C -0.116 4.116 10 C 0.316 3.684 11 O -0.433 6.433 12 N -0.326 5.326 13 N -0.104 5.104 14 C -0.073 4.073 15 C -0.217 4.217 16 C -0.100 4.100 17 C -0.124 4.124 18 C -0.015 4.015 19 C -0.579 4.579 20 H 0.080 0.920 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.244 0.756 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.021 0.979 45 H 0.004 0.996 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.732 11.822 27.077 33.015 hybrid contribution 0.952 -0.700 -0.293 1.218 sum -13.780 11.122 26.784 32.109 Atomic orbital electron populations 1.23286 0.76744 1.05286 1.02058 1.86008 1.23226 1.27137 1.88551 1.19081 0.92189 0.84937 0.96061 1.21490 1.00982 0.92308 1.09096 1.21316 0.95090 0.97618 0.96219 1.21367 0.94291 0.99079 1.03657 1.21187 1.00954 0.91068 0.96603 1.18859 0.90622 0.95325 1.07824 1.20495 1.03493 0.96578 0.91063 1.21359 0.76222 0.78392 0.92410 1.90697 1.47813 1.56638 1.48186 1.46930 1.54126 1.27262 1.04286 1.74579 1.18444 1.15361 1.02042 1.25347 0.91983 0.91186 0.98738 1.21476 1.03499 1.01161 0.95559 1.20497 0.98057 1.01997 0.89494 1.21360 0.93584 1.00126 0.97367 1.19035 0.95271 0.95041 0.92202 1.21714 0.94729 1.42513 0.98935 0.92043 1.25997 1.02462 0.94960 0.96690 1.70106 1.35788 1.44778 1.06741 0.85455 0.79493 0.78945 0.77199 1.19412 1.21067 1.18924 0.92842 0.86805 0.90799 0.83819 0.83356 0.83695 0.83865 0.84345 0.85739 0.75645 0.87662 0.88586 0.89960 0.88138 0.92492 0.94215 0.90816 0.97907 0.99636 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -7.30 9.63 -92.39 -0.89 -8.19 16 3 C 0.12 2.75 6.66 22.51 0.15 2.90 16 4 C -0.22 -4.09 9.04 22.37 0.20 -3.89 16 5 C -0.08 -1.38 10.04 22.26 0.22 -1.16 16 6 C -0.17 -2.80 10.04 22.28 0.22 -2.58 16 7 C -0.08 -1.52 9.68 22.25 0.22 -1.31 16 8 C -0.13 -2.71 4.39 -19.77 -0.09 -2.80 16 9 C -0.08 -1.36 5.55 29.10 0.16 -1.20 16 10 C 0.53 14.99 7.94 87.65 0.70 15.69 16 11 O -0.56 -22.23 16.37 -3.09 -0.05 -22.28 16 12 N -0.58 -15.09 6.09 -173.51 -1.06 -16.15 16 13 N -0.30 -10.08 10.93 -41.20 -0.45 -10.53 16 14 C 0.12 3.47 6.55 46.53 0.30 3.78 16 15 C -0.16 -2.92 9.46 71.24 0.67 -2.25 16 16 C -0.06 -2.07 5.60 29.85 0.17 -1.90 16 17 C -0.09 -3.42 5.03 30.60 0.15 -3.27 16 18 C 0.02 1.14 4.97 29.85 0.15 1.29 16 19 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 21 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 22 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 23 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 27 H 0.05 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 0.68 7.66 -2.39 -0.02 0.67 16 30 H 0.14 1.99 6.30 -2.91 -0.02 1.97 16 31 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.14 1.45 8.05 -2.38 -0.02 1.43 16 35 H 0.12 1.77 7.69 -2.38 -0.02 1.76 16 36 H 0.40 6.75 6.39 -213.32 -1.36 5.39 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.77 6.91 -2.39 -0.02 1.75 16 39 H 0.08 1.18 6.31 -2.38 -0.02 1.16 16 40 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.06 2.19 8.11 -2.39 -0.02 2.17 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.62 7.01 -2.39 -0.02 2.60 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 46 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -83.18 387.67 4.52 -78.66 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.38 Total: 14.72 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 5.04 Total: -25.64 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.22 Total: -83.82 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.94 Total: -30.47 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -83.18 4.52 -78.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841619822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -83.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds