Wall clock time and date at job start Tue Mar 31 2020 13:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47258 * 2 1 4 4 C 1.46500 * 119.99514 * 90.00032 * 3 2 1 5 5 C 1.50699 * 109.46889 * 90.00498 * 4 3 2 6 6 O 1.21283 * 120.00343 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00156 * 179.97438 * 5 4 3 8 8 C 1.47029 * 125.64580 * 359.97438 * 7 5 4 9 9 C 1.54321 * 107.26870 * 181.08105 * 8 7 5 10 10 C 1.55159 * 102.94734 * 22.19165 * 9 8 7 11 11 O 1.42897 * 111.00330 * 82.57081 * 10 9 8 12 12 C 1.50694 * 111.00630 * 206.42508 * 10 9 8 13 13 H 1.07998 * 120.00284 * 21.15272 * 12 10 9 14 14 C 1.37876 * 119.99874 * 201.15447 * 12 10 9 15 15 N 1.31518 * 119.99679 * 174.28584 * 14 12 10 16 16 Si 1.86797 * 120.00308 * 354.28622 * 14 12 10 17 17 H 1.48506 * 109.46727 * 85.91372 * 16 14 12 18 18 H 1.48498 * 109.47492 * 205.91605 * 16 14 12 19 19 H 1.48501 * 109.46806 * 325.91904 * 16 14 12 20 20 C 1.47422 * 125.65105 * 179.97438 * 7 5 4 21 21 C 1.39670 * 120.00145 * 270.00407 * 3 2 1 22 22 C 1.38911 * 120.07400 * 179.71939 * 21 3 2 23 23 C 1.38103 * 119.92713 * 179.76767 * 22 21 3 24 24 C 1.38291 * 120.07149 * 0.51130 * 23 22 21 25 25 C 1.38283 * 120.15022 * 359.74294 * 24 23 22 26 26 C 1.38102 * 120.07378 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46808 * 299.99286 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99450 * 1 2 3 30 30 H 1.09006 * 109.46730 * 240.00323 * 2 1 3 31 31 H 1.08992 * 109.47366 * 120.00659 * 2 1 3 32 32 H 1.08999 * 109.47559 * 330.00466 * 4 3 2 33 33 H 1.08995 * 109.46810 * 210.00056 * 4 3 2 34 34 H 1.09001 * 109.87793 * 300.49772 * 8 7 5 35 35 H 1.08996 * 109.88477 * 61.50853 * 8 7 5 36 36 H 1.09004 * 110.72223 * 140.55299 * 9 8 7 37 37 H 1.08999 * 110.72128 * 263.65051 * 9 8 7 38 38 H 0.96695 * 114.00326 * 61.78078 * 11 10 9 39 39 H 0.97009 * 119.99778 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.36805 * 274.68711 * 20 7 5 41 41 H 1.08995 * 110.36824 * 37.01585 * 20 7 5 42 42 H 1.08003 * 120.03677 * 0.02562 * 22 21 3 43 43 H 1.07996 * 119.96949 * 180.25279 * 23 22 21 44 44 H 1.07995 * 119.92404 * 179.76566 * 24 23 22 45 45 H 1.08001 * 119.96679 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.03876 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8349 1.7037 6 8 4.4235 1.1559 1.0214 7 7 4.1391 2.3778 2.8510 8 6 3.3564 3.2180 3.7692 9 6 4.2928 3.6290 4.9250 10 6 5.7049 3.4647 4.3034 11 8 6.0626 4.6142 3.5337 12 6 6.7349 3.1883 5.3681 13 1 6.4290 2.7954 6.3264 14 6 8.0679 3.4372 5.1188 15 7 8.9532 3.3035 6.0823 16 14 8.6166 3.9644 3.4129 17 1 8.4839 5.4379 3.2836 18 1 10.0347 3.5750 3.2065 19 1 7.7671 3.2995 2.3923 20 6 5.5017 2.2275 3.3932 21 6 2.2511 2.0397 -1.2096 22 6 2.7086 3.3513 -1.2113 23 6 2.9423 3.9979 -2.4091 24 6 2.7113 3.3446 -3.6058 25 6 2.2508 2.0407 -3.6077 26 6 2.0196 1.3866 -2.4135 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.5818 1.6876 2.0285 33 1 2.0956 3.1409 1.1385 34 1 3.0005 4.1060 3.2468 35 1 2.5096 2.6527 4.1583 36 1 4.1169 4.6651 5.2140 37 1 4.1650 2.9647 5.7797 38 1 6.1102 5.4322 4.0471 39 1 9.8910 3.4790 5.9070 40 1 5.5788 1.3101 3.9768 41 1 6.2335 2.2268 2.5854 42 1 2.8854 3.8635 -0.2770 43 1 3.3019 5.0162 -2.4112 44 1 2.8912 3.8537 -4.5410 45 1 2.0710 1.5334 -4.5441 46 1 1.6604 0.3681 -2.4156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:28 Heat of formation + Delta-G solvation = -37.080370 kcal Electronic energy + Delta-G solvation = -27445.943591 eV Core-core repulsion = 23721.990034 eV Total energy + Delta-G solvation = -3723.953557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.13906 -39.18636 -37.64889 -36.22112 -34.74555 -32.41881 -32.00088 -30.78735 -30.52158 -29.62050 -28.52780 -26.77194 -24.79022 -23.47171 -22.76442 -22.05116 -20.73937 -19.86613 -18.92640 -17.77349 -17.56042 -17.00567 -16.06785 -15.65724 -15.44182 -15.16772 -14.81746 -14.65453 -14.36880 -14.32383 -13.94966 -13.61136 -13.29873 -13.25960 -13.11229 -12.63337 -12.52852 -12.35691 -12.30509 -12.16966 -11.84230 -11.72286 -11.53667 -11.37515 -11.22092 -10.91246 -10.74673 -10.61713 -10.35830 -10.24428 -10.19591 -9.42496 -9.24432 -8.86775 -8.63816 -8.58550 -8.13027 -7.30026 -6.25128 -4.38490 1.49423 1.66246 2.86351 2.94316 3.43570 3.49106 3.55963 3.69708 3.96945 4.45536 4.70746 4.74410 4.77637 4.99361 5.01742 5.04741 5.06179 5.11985 5.16152 5.20539 5.26796 5.30431 5.46411 5.49014 5.51665 5.59451 5.65665 5.68828 5.80936 5.96098 6.00272 6.04818 6.08330 6.29613 6.48064 6.52024 6.52838 6.62385 6.68051 6.70189 6.88377 6.96355 7.18125 7.40809 7.48238 7.97889 8.07491 8.53433 8.60593 8.77058 9.36538 10.83507 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.003730 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.492300 B = 7504.134043 C = 8338.354307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.607 5.607 4 C 0.110 3.890 5 C 0.497 3.503 6 O -0.536 6.536 7 N -0.613 5.613 8 C 0.102 3.898 9 C -0.147 4.147 10 C 0.219 3.781 11 O -0.561 6.561 12 C -0.554 4.554 13 H 0.082 0.918 14 C 0.077 3.923 15 N -0.885 5.885 16 Si 0.939 3.061 17 H -0.289 1.289 18 H -0.322 1.322 19 H -0.267 1.267 20 C 0.113 3.887 21 C 0.228 3.772 22 C -0.193 4.193 23 C -0.072 4.072 24 C -0.184 4.184 25 C -0.076 4.076 26 C -0.196 4.196 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.371 0.629 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.680 -0.964 -11.829 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.316 5.316 4 C -0.018 4.018 5 C 0.283 3.717 6 O -0.412 6.412 7 N -0.347 5.347 8 C -0.021 4.021 9 C -0.185 4.185 10 C 0.178 3.822 11 O -0.369 6.369 12 C -0.592 4.592 13 H 0.100 0.900 14 C -0.128 4.128 15 N -0.520 5.520 16 Si 0.773 3.227 17 H -0.216 1.216 18 H -0.253 1.253 19 H -0.193 1.193 20 C -0.009 4.009 21 C 0.127 3.873 22 C -0.215 4.215 23 C -0.091 4.091 24 C -0.204 4.204 25 C -0.095 4.095 26 C -0.218 4.218 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.174 -1.915 -12.506 22.144 hybrid contribution 0.474 0.693 -0.094 0.845 sum -17.700 -1.222 -12.600 21.761 Atomic orbital electron populations 1.22241 0.96341 1.01904 1.02434 1.21366 0.93418 0.82134 1.03145 1.46096 1.70411 1.13247 1.01849 1.21266 0.94004 0.99543 0.86952 1.20993 0.90304 0.80319 0.80084 1.90695 1.58132 1.39315 1.53106 1.48781 1.14595 1.49935 1.21410 1.22042 0.94654 0.93793 0.91622 1.23234 0.96889 1.01763 0.96648 1.20212 0.91149 0.82720 0.88092 1.86169 1.90328 1.19089 1.41290 1.21165 0.90794 1.47278 0.99930 0.89987 1.25127 0.96443 0.93244 0.98026 1.69954 1.02612 1.46594 1.32805 0.85887 0.74401 0.78739 0.83636 1.21620 1.25259 1.19263 1.22943 0.81563 0.98968 0.97392 1.17772 0.92716 0.91244 0.85581 1.20683 1.07856 0.94275 0.98699 1.20873 0.96920 0.99276 0.91983 1.20855 1.06061 0.95823 0.97658 1.20837 0.97075 0.94551 0.97005 1.20624 1.09697 1.00461 0.91060 0.91770 0.92528 0.92260 0.90530 0.90858 0.88174 0.88049 0.92134 0.92365 0.90686 0.90200 0.78070 0.92279 0.90404 0.90477 0.86498 0.86361 0.86742 0.86484 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.12 1.31 5.88 -4.04 -0.02 1.29 16 3 N -0.61 -7.89 2.09 -173.12 -0.36 -8.25 16 4 C 0.11 1.40 4.84 -5.19 -0.03 1.38 16 5 C 0.50 8.82 7.92 -10.99 -0.09 8.73 16 6 O -0.54 -11.83 16.69 5.55 0.09 -11.74 16 7 N -0.61 -11.04 3.33 -170.51 -0.57 -11.61 16 8 C 0.10 1.46 6.49 -3.06 -0.02 1.44 16 9 C -0.15 -2.44 6.14 -24.90 -0.15 -2.60 16 10 C 0.22 4.68 0.69 -89.61 -0.06 4.62 16 11 O -0.56 -11.94 8.88 -35.23 -0.31 -12.25 16 12 C -0.55 -14.32 8.87 -34.44 -0.31 -14.62 16 13 H 0.08 2.27 7.98 -52.49 -0.42 1.86 16 14 C 0.08 2.13 5.46 -17.82 -0.10 2.04 16 15 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 16 Si 0.94 23.67 24.85 -169.99 -4.22 19.44 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.32 -8.34 7.11 56.52 0.40 -7.94 16 19 H -0.27 -6.94 5.23 56.52 0.30 -6.65 16 20 C 0.11 2.46 5.79 -2.52 -0.01 2.44 16 21 C 0.23 3.18 6.55 -83.79 -0.55 2.63 16 22 C -0.19 -2.73 9.21 -39.38 -0.36 -3.10 16 23 C -0.07 -0.92 10.04 -39.61 -0.40 -1.32 16 24 C -0.18 -2.17 10.04 -39.55 -0.40 -2.57 16 25 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 26 C -0.20 -2.45 9.21 -39.38 -0.36 -2.82 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.81 6.20 -51.93 -0.32 0.49 16 31 H 0.07 0.81 8.07 -51.93 -0.42 0.40 16 32 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.10 1.17 6.19 -51.93 -0.32 0.85 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 38 H 0.37 6.79 9.02 45.56 0.41 7.20 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 1.71 8.03 -51.93 -0.42 1.30 16 41 H 0.08 1.93 6.10 -51.93 -0.32 1.61 16 42 H 0.12 1.64 6.14 -52.48 -0.32 1.32 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.29 6.14 -52.49 -0.32 0.97 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -33.58 367.88 -8.26 -41.84 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.33 Total: 6.94 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.87 Total: -4.73 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.16 Total: -45.05 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.22 Total: -23.99 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.22 Total: 19.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.58 -8.26 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.760 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds